Wall clock time and date at job start Tue Mar 31 2020 18:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00543 * 2 1 4 4 H 1.48502 * 109.47212 * 270.00276 * 3 2 1 5 5 H 1.48504 * 109.46709 * 29.99985 * 3 2 1 6 6 H 1.48489 * 109.47268 * 149.99967 * 3 2 1 7 7 C 1.38821 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99207 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00057 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46950 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43582 * 52.45810 * 11 10 9 13 13 C 1.54888 * 110.48579 * 289.76652 * 11 10 9 14 14 C 1.55013 * 102.75817 * 203.36959 * 13 11 10 15 15 C 1.54266 * 104.13278 * 37.95398 * 14 13 11 16 16 H 1.08999 * 110.03021 * 217.06720 * 15 14 13 17 17 N 1.46502 * 110.02992 * 95.68668 * 15 14 13 18 18 C 1.34776 * 120.00144 * 87.09342 * 17 15 14 19 19 O 1.21592 * 119.99729 * 359.97438 * 18 17 15 20 20 C 1.47527 * 120.00039 * 180.02562 * 18 17 15 21 21 C 1.36596 * 125.76990 * 180.02562 * 20 18 17 22 22 N 1.34806 * 106.83749 * 180.26004 * 21 20 18 23 23 C 1.46499 * 126.59580 * 179.75462 * 22 21 20 24 24 C 1.53785 * 113.61372 * 12.49788 * 23 22 21 25 25 C 1.53784 * 87.08177 * 220.02018 * 24 23 22 26 26 C 1.53778 * 87.08070 * 25.42878 * 25 24 23 27 27 N 1.40215 * 106.81264 * 359.62345 * 22 21 20 28 28 N 1.28753 * 108.36452 * 0.38579 * 27 22 21 29 29 C 1.53873 * 106.64367 * 336.37551 * 15 14 13 30 30 H 0.97002 * 119.99579 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99705 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47417 * 59.99467 * 10 9 7 33 33 H 1.09001 * 109.46579 * 299.99716 * 10 9 7 34 34 H 1.09000 * 110.75570 * 321.70399 * 13 11 10 35 35 H 1.09006 * 110.74952 * 84.88185 * 13 11 10 36 36 H 1.08997 * 110.50287 * 279.29811 * 14 13 11 37 37 H 1.09003 * 110.52245 * 156.61551 * 14 13 11 38 38 H 0.96998 * 119.99928 * 267.08593 * 17 15 14 39 39 H 1.08002 * 126.57798 * 359.97438 * 21 20 18 40 40 H 1.09001 * 112.85604 * 143.79808 * 23 22 21 41 41 H 1.09003 * 113.60815 * 334.56214 * 24 23 22 42 42 H 1.08991 * 113.61623 * 105.46771 * 24 23 22 43 43 H 1.08997 * 113.61128 * 270.88170 * 25 24 23 44 44 H 1.08997 * 113.69017 * 139.99044 * 25 24 23 45 45 H 1.08998 * 113.61584 * 220.01936 * 26 25 24 46 46 H 1.09000 * 113.69222 * 89.13388 * 26 25 24 47 47 H 1.08999 * 110.03468 * 119.30745 * 29 15 14 48 48 H 1.08995 * 110.03085 * 240.74205 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0635 -4.8197 -0.0012 12 1 0.3435 -4.7043 -0.8113 13 6 0.3378 -4.9131 1.3640 14 6 -0.1137 -6.3953 1.4110 15 6 1.0588 -7.1667 0.7706 16 1 0.6785 -7.9939 0.1713 17 7 1.9552 -7.6731 1.8129 18 6 1.7134 -8.8680 2.3875 19 8 0.7510 -9.5255 2.0410 20 6 2.6156 -9.3777 3.4375 21 6 2.4833 -10.5673 4.0956 22 7 3.5048 -10.6446 4.9718 23 6 3.7751 -11.7423 5.9037 24 6 2.9498 -13.0085 5.6199 25 6 2.7909 -13.1512 7.1428 26 6 3.0019 -11.6303 7.2283 27 7 4.2608 -9.4738 4.8177 28 7 3.7066 -8.7499 3.9085 29 6 1.8069 -6.1656 -0.1272 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0002 32 1 2.6846 -3.7147 0.8894 33 1 2.6845 -3.7146 -0.8906 34 1 1.0234 -4.6918 2.1819 35 1 -0.5220 -4.2436 1.3908 36 1 -1.0251 -6.5354 0.8299 37 1 -0.2640 -6.7165 2.4417 38 1 2.7227 -7.1484 2.0894 39 1 1.7064 -11.3026 3.9461 40 1 4.8401 -11.9340 6.0346 41 1 2.0123 -12.8111 5.0998 42 1 3.5269 -13.8127 5.1638 43 1 3.5866 -13.7294 7.6125 44 1 1.7960 -13.4720 7.4513 45 1 3.6212 -11.3220 8.0706 46 1 2.0796 -11.0550 7.1482 47 1 2.8368 -6.0566 0.2125 48 1 1.7888 -6.5066 -1.1623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332262714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:41 Heat of formation + Delta-G solvation = 58.783060 kcal Electronic energy + Delta-G solvation = -27703.348536 eV Core-core repulsion = 23794.881150 eV Total energy + Delta-G solvation = -3908.467385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.34580 -40.91747 -39.76726 -39.05313 -36.44790 -34.80676 -34.07391 -32.93718 -31.97164 -30.11301 -29.11818 -27.08632 -26.82521 -26.20744 -24.65544 -23.88763 -23.34826 -21.96829 -21.18212 -20.80210 -20.51115 -19.35436 -19.01163 -17.54829 -17.47107 -17.12604 -16.71295 -16.53557 -16.30816 -15.77661 -15.71541 -15.50163 -15.19836 -14.93524 -14.58709 -14.27131 -14.17327 -13.76448 -13.51630 -13.46390 -13.25880 -13.15413 -12.92705 -12.79774 -12.68632 -12.50385 -12.17200 -12.06416 -12.05616 -11.86615 -11.84673 -11.59571 -11.52196 -11.50701 -11.45567 -11.19003 -11.14551 -10.89125 -10.42845 -10.01684 -8.96293 -7.93518 -5.21482 0.10478 0.58464 1.05123 1.47311 1.49255 1.57697 2.11824 2.21631 2.57283 3.05669 3.16545 3.37369 3.39663 3.57000 3.61398 3.66298 3.74761 3.75285 3.87857 3.94304 4.15410 4.18181 4.42486 4.46995 4.53927 4.54352 4.59808 4.63169 4.67589 4.70697 4.75873 4.79767 4.89709 4.93430 4.95194 5.02558 5.05667 5.11502 5.17555 5.25314 5.27416 5.39182 5.48887 5.50607 5.56978 5.60942 6.29215 6.41690 6.87630 7.11941 7.35357 8.13285 8.36422 9.30125 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.001894 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.707749 B =14777.684400 C =15460.623754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.158 3.842 11 C -0.090 4.090 12 H 0.073 0.927 13 C -0.109 4.109 14 C -0.123 4.123 15 C 0.149 3.851 16 H 0.096 0.904 17 N -0.701 5.701 18 C 0.606 3.394 19 O -0.565 6.565 20 C -0.124 4.124 21 C 0.107 3.893 22 N -0.337 5.337 23 C 0.103 3.897 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.148 4.148 27 N -0.092 5.092 28 N -0.227 5.227 29 C -0.112 4.112 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.411 0.589 39 H 0.231 0.769 40 H 0.145 0.855 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 -33.862 13.301 36.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.386 5.386 10 C 0.032 3.968 11 C -0.109 4.109 12 H 0.091 0.909 13 C -0.147 4.147 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.114 0.886 17 N -0.351 5.351 18 C 0.391 3.609 19 O -0.444 6.444 20 C -0.265 4.265 21 C -0.051 4.051 22 N -0.121 5.121 23 C 0.004 3.996 24 C -0.179 4.179 25 C -0.161 4.161 26 C -0.187 4.187 27 N -0.071 5.071 28 N -0.100 5.100 29 C -0.150 4.150 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.247 0.753 39 H 0.248 0.752 40 H 0.163 0.837 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.595 -33.457 13.558 36.697 hybrid contribution -0.447 1.204 -0.126 1.290 sum 6.148 -32.253 13.432 35.475 Atomic orbital electron populations 1.69822 1.06567 1.25982 1.59652 1.25570 0.96431 1.01084 1.03868 0.85136 0.77659 0.79501 0.77454 1.21318 1.22180 1.19562 1.19659 0.91495 0.85547 1.40995 0.90799 1.42560 1.05646 1.01149 1.89266 1.20871 0.93774 0.84758 0.97394 1.22048 0.97147 0.93798 0.97871 0.90880 1.22428 0.99466 0.96024 0.96740 1.22733 0.98254 0.94207 1.00960 1.21621 0.89590 0.96432 0.87921 0.88644 1.46035 1.30385 1.19443 1.39231 1.16895 0.82962 0.81124 0.79902 1.90775 1.30275 1.59006 1.64361 1.21527 1.00296 0.97355 1.07280 1.23645 0.93525 0.98478 0.89465 1.50898 1.17891 1.16569 1.26730 1.24050 1.03751 0.83199 0.88636 1.23524 1.00557 0.94674 0.99120 1.22708 1.04731 0.94155 0.94555 1.23469 1.00414 0.99144 0.95637 1.81928 1.16803 0.92342 1.16072 1.74628 1.06236 1.23927 1.05200 1.22374 0.99522 0.92449 1.00658 0.94063 0.79404 0.96360 0.96208 0.92586 0.93038 0.89887 0.92036 0.75265 0.75230 0.83738 0.88200 0.87906 0.87558 0.89015 0.89414 0.90104 0.90158 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 3 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.25 -14.09 9.99 84.04 0.84 -13.25 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -38.81 5.49 -343.46 -1.89 -40.70 16 10 C 0.16 6.42 5.54 86.38 0.48 6.90 16 11 C -0.09 -2.86 2.89 -9.72 -0.03 -2.88 16 12 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 13 C -0.11 -3.47 6.19 31.93 0.20 -3.27 16 14 C -0.12 -3.25 6.54 31.71 0.21 -3.04 16 15 C 0.15 3.58 3.23 45.71 0.15 3.73 16 16 H 0.10 2.28 7.59 -2.39 -0.02 2.26 16 17 N -0.70 -16.93 5.03 -442.27 -2.23 -19.16 16 18 C 0.61 15.43 7.81 86.69 0.68 16.11 16 19 O -0.57 -16.41 16.53 -4.01 -0.07 -16.48 16 20 C -0.12 -2.85 6.99 40.82 0.29 -2.56 16 21 C 0.11 1.71 10.48 83.85 0.88 2.59 16 22 N -0.34 -5.14 3.83 -324.04 -1.24 -6.38 16 23 C 0.10 0.71 5.06 45.52 0.23 0.95 16 24 C -0.14 -0.25 7.44 31.12 0.23 -0.02 16 25 C -0.12 -0.07 8.08 31.12 0.25 0.18 16 26 C -0.15 -0.79 7.88 31.12 0.25 -0.54 16 27 N -0.09 -2.14 13.78 37.02 0.51 -1.63 16 28 N -0.23 -5.81 12.04 -49.99 -0.60 -6.41 16 29 C -0.11 -2.71 6.14 31.32 0.19 -2.52 16 30 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 31 H 0.37 20.70 7.63 -92.71 -0.71 19.99 16 32 H 0.02 0.76 8.02 -2.39 -0.02 0.74 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 35 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 38 H 0.41 9.65 7.99 -92.71 -0.74 8.91 16 39 H 0.23 2.09 6.78 -2.91 -0.02 2.07 16 40 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 0.14 6.39 -2.39 -0.02 0.13 16 42 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.08 1.89 7.31 -2.39 -0.02 1.87 16 48 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -75.13 393.82 1.64 -73.49 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.46 Total: 30.04 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.30 Total: -1.73 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -5.16 Total: -134.61 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.07 Total: -16.48 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -75.13 1.64 -73.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.274 kcal (2) G-P(sol) polarization free energy of solvation -75.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds