Wall clock time and date at job start Tue Mar 31 2020 18:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.43409 * 307.54353 * 11 10 9 13 13 C 1.54896 * 110.48395 * 70.22508 * 11 10 9 14 14 C 1.54887 * 102.74695 * 156.62141 * 13 11 10 15 15 C 1.54266 * 104.19663 * 322.05537 * 14 13 11 16 16 H 1.09007 * 110.07072 * 142.91694 * 15 14 13 17 17 N 1.46497 * 110.03425 * 264.32364 * 15 14 13 18 18 C 1.34778 * 120.00161 * 272.17433 * 17 15 14 19 19 O 1.21594 * 120.00170 * 359.97438 * 18 17 15 20 20 C 1.47523 * 119.99821 * 179.97438 * 18 17 15 21 21 C 1.36594 * 125.77078 * 179.97438 * 20 18 17 22 22 N 1.34811 * 106.84093 * 179.97438 * 21 20 18 23 23 C 1.46502 * 126.59416 * 179.97438 * 22 21 20 24 24 C 1.53785 * 113.61436 * 14.14331 * 23 22 21 25 25 C 1.53954 * 87.01825 * 220.04298 * 24 23 22 26 26 C 1.53774 * 113.61926 * 276.53268 * 23 22 21 27 27 N 1.40208 * 106.81210 * 0.02562 * 22 21 20 28 28 N 1.28767 * 108.36552 * 359.74217 * 27 22 21 29 29 C 1.53878 * 106.59854 * 23.61238 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09003 * 110.75056 * 274.93063 * 13 11 10 35 35 H 1.08995 * 110.75527 * 38.30271 * 13 11 10 36 36 H 1.09001 * 110.48577 * 203.37246 * 14 13 11 37 37 H 1.09003 * 110.59643 * 80.79097 * 14 13 11 38 38 H 0.97003 * 119.99562 * 92.16393 * 17 15 14 39 39 H 1.08008 * 126.57506 * 0.02562 * 21 20 18 40 40 H 1.09003 * 112.85041 * 145.33377 * 23 22 21 41 41 H 1.08996 * 113.61234 * 334.56788 * 24 23 22 42 42 H 1.09000 * 113.61345 * 105.46289 * 24 23 22 43 43 H 1.08997 * 113.54063 * 270.81086 * 25 24 23 44 44 H 1.09001 * 113.73775 * 139.94419 * 25 24 23 45 45 H 1.08999 * 113.61996 * 254.53298 * 26 23 22 46 46 H 1.09003 * 113.61041 * 25.43675 * 26 23 22 47 47 H 1.08997 * 110.02979 * 240.71542 * 29 15 14 48 48 H 1.09002 * 110.07138 * 119.30836 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3431 -4.7047 0.8073 13 6 0.3389 -4.9124 -1.3680 14 6 -0.1117 -6.3935 -1.4159 15 6 1.0596 -7.1663 -0.7752 16 1 0.6789 -7.9938 -0.1766 17 7 1.9567 -7.6722 -1.8171 18 6 1.7231 -8.8730 -2.3827 19 8 0.7681 -9.5368 -2.0279 20 6 2.6262 -9.3822 -3.4322 21 6 2.5018 -10.5773 -4.0818 22 7 3.5240 -10.6543 -4.9572 23 6 3.8047 -11.7594 -5.8772 24 6 2.6319 -12.7413 -6.0365 25 6 3.6800 -13.8690 -6.0286 26 6 4.5857 -12.9158 -5.2311 27 7 4.2677 -9.4739 -4.8172 28 7 3.7075 -8.7462 -3.9145 29 6 1.8070 -6.1656 0.1236 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 -0.5229 -4.2454 -1.3939 35 1 1.0251 -4.6907 -2.1853 36 1 -0.2613 -6.7135 -2.4471 37 1 -1.0244 -6.5355 -0.8372 38 1 2.7187 -7.1428 -2.0999 39 1 1.7316 -11.3181 -3.9247 40 1 4.2255 -11.4244 -6.8253 41 1 1.9608 -12.7628 -5.1780 42 1 2.1043 -12.6410 -6.9850 43 1 4.0659 -14.1116 -7.0186 44 1 3.3716 -14.7506 -5.4667 45 1 5.6330 -12.9563 -5.5301 46 1 4.4496 -12.9851 -4.1518 47 1 2.8372 -6.0564 -0.2154 48 1 1.7891 -6.5067 1.1588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332262718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:45 Heat of formation + Delta-G solvation = 82.551182 kcal Electronic energy + Delta-G solvation = -27728.544210 eV Core-core repulsion = 23821.107487 eV Total energy + Delta-G solvation = -3907.436722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62630 -39.97548 -39.37325 -37.93254 -34.96141 -33.77383 -33.18745 -31.42752 -30.80021 -28.70150 -27.81066 -26.63551 -26.51609 -24.31661 -23.62400 -22.78088 -22.34193 -21.07735 -20.26542 -20.07749 -19.57525 -18.60959 -17.16175 -16.81502 -16.62486 -16.40579 -16.00357 -15.48439 -15.07380 -14.93975 -14.60645 -14.21289 -13.84617 -13.64655 -13.39395 -13.31442 -13.25443 -13.17131 -13.09028 -12.67125 -12.38631 -12.17618 -11.67198 -11.62182 -11.53512 -11.40403 -11.23639 -10.88613 -10.76624 -10.66864 -10.62826 -10.46755 -10.28325 -10.21359 -10.15214 -9.92082 -9.62307 -9.09407 -9.05423 -8.80573 -6.92050 -6.03964 -3.02465 0.78524 1.46215 1.60998 3.01556 3.12724 3.39694 3.55863 3.59833 3.59892 3.77103 3.89258 3.89974 3.94354 4.33145 4.48682 4.64665 4.68087 4.74737 4.76803 4.80182 4.82302 4.95388 5.05871 5.07059 5.12876 5.16019 5.38326 5.46446 5.53657 5.60134 5.64078 5.67678 5.75628 5.85080 5.92078 6.00193 6.06601 6.12552 6.15409 6.30262 6.49657 6.56233 6.58516 6.79843 6.92874 7.35142 7.68351 7.87608 8.06544 8.82846 9.31275 10.17627 10.33259 11.44904 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.001874 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.573583 B =14934.834433 C =15627.392113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.063 0.937 9 N -0.743 5.743 10 C 0.166 3.834 11 C -0.099 4.099 12 H 0.076 0.924 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.142 3.858 16 H 0.091 0.909 17 N -0.703 5.703 18 C 0.604 3.396 19 O -0.543 6.543 20 C -0.101 4.101 21 C 0.092 3.908 22 N -0.351 5.351 23 C 0.121 3.879 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.145 4.145 27 N -0.064 5.064 28 N -0.203 5.203 29 C -0.123 4.123 30 H 0.254 0.746 31 H 0.367 0.633 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.409 0.591 39 H 0.202 0.798 40 H 0.135 0.865 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.133 -32.251 -12.054 34.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.245 4.245 3 Si 0.911 3.089 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.388 5.388 10 C 0.038 3.962 11 C -0.118 4.118 12 H 0.094 0.906 13 C -0.150 4.150 14 C -0.171 4.171 15 C 0.038 3.962 16 H 0.109 0.891 17 N -0.354 5.354 18 C 0.388 3.612 19 O -0.420 6.420 20 C -0.240 4.240 21 C -0.065 4.065 22 N -0.135 5.135 23 C 0.019 3.981 24 C -0.186 4.186 25 C -0.173 4.173 26 C -0.184 4.184 27 N -0.043 5.043 28 N -0.077 5.077 29 C -0.161 4.161 30 H 0.065 0.935 31 H 0.200 0.800 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.245 0.755 39 H 0.218 0.782 40 H 0.153 0.847 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.093 0.907 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.771 -30.258 -12.294 33.355 hybrid contribution -0.437 -2.051 0.031 2.097 sum 6.334 -32.309 -12.263 35.134 Atomic orbital electron populations 1.70879 1.06005 1.28347 1.53907 1.25762 0.97089 1.00953 1.00665 0.83240 0.74189 0.75644 0.75820 1.21071 1.22331 1.22322 1.20046 0.92013 0.85950 1.48038 0.91868 1.42348 1.04866 1.00935 1.90660 1.20630 0.92961 0.84850 0.97720 1.22192 0.97906 0.93864 0.97833 0.90598 1.22506 1.00339 0.94851 0.97284 1.22790 0.97484 0.95913 1.00931 1.21712 0.89952 0.96564 0.87995 0.89123 1.46038 1.30883 1.18926 1.39505 1.16755 0.83068 0.81386 0.79955 1.90797 1.29757 1.58301 1.63150 1.21513 1.00246 0.95814 1.06447 1.23220 0.93318 0.99232 0.90759 1.50594 1.19168 1.16426 1.27325 1.23472 0.99850 0.81721 0.93033 1.23515 0.96473 0.94136 1.04476 1.22745 0.96032 0.97070 1.01483 1.23450 1.00404 0.93390 1.01145 1.82023 1.15997 0.90168 1.16119 1.74673 1.05462 1.22991 1.04578 1.22454 0.99806 0.94440 0.99422 0.93453 0.80018 0.96232 0.96468 0.91295 0.91392 0.91597 0.90813 0.75509 0.78153 0.84734 0.88533 0.89206 0.88933 0.89670 0.89518 0.88968 0.90720 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.88 13.70 55.49 0.76 -29.12 16 2 C -0.05 -1.42 5.50 -17.43 -0.10 -1.51 16 3 Si 1.08 26.59 29.92 -169.99 -5.09 21.50 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.30 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.33 -9.60 9.99 -15.06 -0.15 -9.75 16 8 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.74 -19.22 5.49 -59.91 -0.33 -19.55 16 10 C 0.17 3.43 5.54 -4.05 -0.02 3.41 16 11 C -0.10 -1.60 2.89 -88.96 -0.26 -1.86 16 12 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.11 -1.76 6.19 -24.74 -0.15 -1.92 16 14 C -0.13 -1.79 6.54 -25.07 -0.16 -1.95 16 15 C 0.14 1.80 3.25 -66.81 -0.22 1.58 16 16 H 0.09 1.17 7.56 -51.93 -0.39 0.77 16 17 N -0.70 -8.77 5.03 -53.76 -0.27 -9.04 16 18 C 0.60 7.91 7.81 -12.48 -0.10 7.81 16 19 O -0.54 -8.17 16.52 5.28 0.09 -8.08 16 20 C -0.10 -1.18 6.99 -83.55 -0.58 -1.77 16 21 C 0.09 0.80 10.49 -16.84 -0.18 0.62 16 22 N -0.35 -2.88 3.83 -53.77 -0.21 -3.08 16 23 C 0.12 0.52 5.05 -67.12 -0.34 0.18 16 24 C -0.15 -0.34 7.47 -25.83 -0.19 -0.53 16 25 C -0.14 -0.20 8.09 -25.83 -0.21 -0.41 16 26 C -0.15 -0.46 7.88 -25.92 -0.20 -0.66 16 27 N -0.06 -0.74 13.78 60.35 0.83 0.09 16 28 N -0.20 -2.61 12.04 32.85 0.40 -2.21 16 29 C -0.12 -1.59 6.14 -25.61 -0.16 -1.75 16 30 H 0.25 7.91 6.77 -40.82 -0.28 7.63 16 31 H 0.37 9.66 6.47 -40.82 -0.26 9.39 16 32 H 0.02 0.42 8.02 -51.93 -0.42 0.00 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.13 7.97 -51.93 -0.41 0.72 16 36 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.41 4.91 8.01 -40.82 -0.33 4.58 16 39 H 0.20 1.15 6.79 -52.48 -0.36 0.80 16 40 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.21 6.39 -51.93 -0.33 -0.12 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 43 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 44 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.95 7.31 -51.93 -0.38 0.57 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -35.96 392.15 -8.36 -44.31 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.43 Total: 7.77 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -3.02 Total: -8.50 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: 1.18 Total: -62.91 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -5.09 Total: 21.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.96 -8.36 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.865 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds