Wall clock time and date at job start Tue Mar 31 2020 18:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.43409 * 307.54353 * 11 10 9 13 13 C 1.54896 * 110.48395 * 70.22508 * 11 10 9 14 14 C 1.54887 * 102.74695 * 156.62141 * 13 11 10 15 15 C 1.54266 * 104.19663 * 322.05537 * 14 13 11 16 16 H 1.09007 * 110.07072 * 142.91694 * 15 14 13 17 17 N 1.46497 * 110.03425 * 264.32364 * 15 14 13 18 18 C 1.34778 * 120.00161 * 272.17433 * 17 15 14 19 19 O 1.21594 * 120.00170 * 359.97438 * 18 17 15 20 20 C 1.47523 * 119.99821 * 179.97438 * 18 17 15 21 21 C 1.36594 * 125.77078 * 179.97438 * 20 18 17 22 22 N 1.34811 * 106.84093 * 179.97438 * 21 20 18 23 23 C 1.46502 * 126.59416 * 179.97438 * 22 21 20 24 24 C 1.53785 * 113.61436 * 14.14331 * 23 22 21 25 25 C 1.53954 * 87.01825 * 220.04298 * 24 23 22 26 26 C 1.53774 * 113.61926 * 276.53268 * 23 22 21 27 27 N 1.40208 * 106.81210 * 0.02562 * 22 21 20 28 28 N 1.28767 * 108.36552 * 359.74217 * 27 22 21 29 29 C 1.53878 * 106.59854 * 23.61238 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09003 * 110.75056 * 274.93063 * 13 11 10 35 35 H 1.08995 * 110.75527 * 38.30271 * 13 11 10 36 36 H 1.09001 * 110.48577 * 203.37246 * 14 13 11 37 37 H 1.09003 * 110.59643 * 80.79097 * 14 13 11 38 38 H 0.97003 * 119.99562 * 92.16393 * 17 15 14 39 39 H 1.08008 * 126.57506 * 0.02562 * 21 20 18 40 40 H 1.09003 * 112.85041 * 145.33377 * 23 22 21 41 41 H 1.08996 * 113.61234 * 334.56788 * 24 23 22 42 42 H 1.09000 * 113.61345 * 105.46289 * 24 23 22 43 43 H 1.08997 * 113.54063 * 270.81086 * 25 24 23 44 44 H 1.09001 * 113.73775 * 139.94419 * 25 24 23 45 45 H 1.08999 * 113.61996 * 254.53298 * 26 23 22 46 46 H 1.09003 * 113.61041 * 25.43675 * 26 23 22 47 47 H 1.08997 * 110.02979 * 240.71542 * 29 15 14 48 48 H 1.09002 * 110.07138 * 119.30836 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3431 -4.7047 0.8073 13 6 0.3389 -4.9124 -1.3680 14 6 -0.1117 -6.3935 -1.4159 15 6 1.0596 -7.1663 -0.7752 16 1 0.6789 -7.9938 -0.1766 17 7 1.9567 -7.6722 -1.8171 18 6 1.7231 -8.8730 -2.3827 19 8 0.7681 -9.5368 -2.0279 20 6 2.6262 -9.3822 -3.4322 21 6 2.5018 -10.5773 -4.0818 22 7 3.5240 -10.6543 -4.9572 23 6 3.8047 -11.7594 -5.8772 24 6 2.6319 -12.7413 -6.0365 25 6 3.6800 -13.8690 -6.0286 26 6 4.5857 -12.9158 -5.2311 27 7 4.2677 -9.4739 -4.8172 28 7 3.7075 -8.7462 -3.9145 29 6 1.8070 -6.1656 0.1236 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 -0.5229 -4.2454 -1.3939 35 1 1.0251 -4.6907 -2.1853 36 1 -0.2613 -6.7135 -2.4471 37 1 -1.0244 -6.5355 -0.8372 38 1 2.7187 -7.1428 -2.0999 39 1 1.7316 -11.3181 -3.9247 40 1 4.2255 -11.4244 -6.8253 41 1 1.9608 -12.7628 -5.1780 42 1 2.1043 -12.6410 -6.9850 43 1 4.0659 -14.1116 -7.0186 44 1 3.3716 -14.7506 -5.4667 45 1 5.6330 -12.9563 -5.5301 46 1 4.4496 -12.9851 -4.1518 47 1 2.8372 -6.0564 -0.2154 48 1 1.7891 -6.5067 1.1588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332262718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:45 Heat of formation + Delta-G solvation = 57.841628 kcal Electronic energy + Delta-G solvation = -27729.615696 eV Core-core repulsion = 23821.107487 eV Total energy + Delta-G solvation = -3908.508209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.36939 -40.97010 -39.77977 -39.13918 -36.74954 -34.92659 -34.11015 -32.90926 -31.97766 -30.07674 -29.10200 -27.07522 -26.83968 -26.02834 -24.70758 -24.15829 -23.36813 -22.02169 -21.23912 -20.86302 -20.53442 -19.43707 -19.20667 -17.60617 -17.51021 -17.18973 -16.70457 -16.63888 -16.45280 -15.80176 -15.69925 -15.56429 -15.32674 -14.97500 -14.83772 -14.42449 -14.16406 -13.78870 -13.64671 -13.52934 -13.28266 -12.95588 -12.85217 -12.71775 -12.66193 -12.52852 -12.08275 -12.07105 -11.93542 -11.87246 -11.83709 -11.69861 -11.59019 -11.52519 -11.23213 -11.18439 -11.16415 -10.90015 -10.45752 -10.06288 -9.09111 -8.39882 -5.32645 0.08053 0.55419 1.02971 1.58115 1.68538 1.85017 2.07806 2.17962 2.71862 3.04348 3.13904 3.35724 3.39611 3.50661 3.51649 3.61861 3.72785 3.73738 3.83089 3.86918 3.99950 4.13189 4.35894 4.40845 4.45502 4.47604 4.54749 4.58086 4.60584 4.64797 4.68980 4.74482 4.86640 4.88366 4.92144 4.94411 5.02854 5.04747 5.09493 5.14920 5.26013 5.29377 5.44763 5.48751 5.54150 5.59172 6.37292 6.50180 6.84681 7.07945 7.11057 8.02151 8.13045 9.12365 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.001874 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.573583 B =14934.834433 C =15627.392113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.106 4.106 3 Si 1.129 2.871 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.755 5.755 10 C 0.164 3.836 11 C -0.090 4.090 12 H 0.073 0.927 13 C -0.109 4.109 14 C -0.123 4.123 15 C 0.149 3.851 16 H 0.097 0.903 17 N -0.701 5.701 18 C 0.607 3.393 19 O -0.565 6.565 20 C -0.125 4.125 21 C 0.108 3.892 22 N -0.336 5.336 23 C 0.102 3.898 24 C -0.142 4.142 25 C -0.123 4.123 26 C -0.146 4.146 27 N -0.092 5.092 28 N -0.228 5.228 29 C -0.112 4.112 30 H 0.243 0.757 31 H 0.361 0.639 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.411 0.589 39 H 0.232 0.768 40 H 0.144 0.856 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 -34.415 -12.603 37.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.297 4.297 3 Si 0.953 3.047 4 H -0.218 1.218 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.400 5.400 10 C 0.038 3.962 11 C -0.109 4.109 12 H 0.091 0.909 13 C -0.147 4.147 14 C -0.161 4.161 15 C 0.045 3.955 16 H 0.115 0.885 17 N -0.352 5.352 18 C 0.392 3.608 19 O -0.444 6.444 20 C -0.265 4.265 21 C -0.051 4.051 22 N -0.120 5.120 23 C 0.003 3.997 24 C -0.180 4.180 25 C -0.161 4.161 26 C -0.184 4.184 27 N -0.071 5.071 28 N -0.101 5.101 29 C -0.150 4.150 30 H 0.054 0.946 31 H 0.193 0.807 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.247 0.753 39 H 0.248 0.752 40 H 0.161 0.839 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.521 -32.473 -12.865 35.730 hybrid contribution -0.612 -1.502 0.138 1.628 sum 6.909 -33.975 -12.727 36.933 Atomic orbital electron populations 1.70991 1.07108 1.27833 1.56318 1.27245 0.97168 1.04686 1.00576 0.82620 0.73375 0.71548 0.77136 1.21762 1.20301 1.20485 1.20419 0.92369 0.87327 1.46682 0.91744 1.42561 1.04829 1.01967 1.90605 1.20797 0.93711 0.84443 0.97265 1.22066 0.97115 0.93841 0.97923 0.90860 1.22415 0.99363 0.96278 0.96643 1.22714 0.98300 0.94005 1.01108 1.21612 0.89546 0.96438 0.87939 0.88488 1.46030 1.30818 1.18937 1.39379 1.16894 0.82875 0.81145 0.79911 1.90776 1.30700 1.58856 1.64018 1.21516 1.00561 0.97157 1.07267 1.23645 0.93347 0.98589 0.89491 1.50904 1.18120 1.16023 1.26987 1.24062 1.01838 0.80953 0.92889 1.23568 0.96079 0.93188 1.05208 1.22736 0.94834 0.96660 1.01882 1.23465 1.00850 0.93292 1.00814 1.81932 1.17054 0.91628 1.16513 1.74635 1.06136 1.23995 1.05290 1.22369 0.99504 0.92374 1.00757 0.94616 0.80693 0.96511 0.96427 0.93047 0.92619 0.91908 0.89754 0.75295 0.75206 0.83885 0.88160 0.88150 0.87658 0.88880 0.89304 0.89849 0.90250 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.56 13.70 21.65 0.30 -62.26 16 2 C -0.11 -6.33 5.50 84.86 0.47 -5.86 16 3 Si 1.13 53.38 29.92 68.60 2.05 55.43 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.34 -19.72 9.99 84.03 0.84 -18.88 16 8 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.76 -39.66 5.49 -343.47 -1.89 -41.54 16 10 C 0.16 6.79 5.54 86.38 0.48 7.27 16 11 C -0.09 -2.89 2.89 -9.72 -0.03 -2.92 16 12 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.11 -3.46 6.19 31.89 0.20 -3.26 16 14 C -0.12 -3.20 6.54 31.67 0.21 -3.00 16 15 C 0.15 3.58 3.25 45.72 0.15 3.73 16 16 H 0.10 2.30 7.56 -2.38 -0.02 2.28 16 17 N -0.70 -16.96 5.03 -442.26 -2.22 -19.19 16 18 C 0.61 15.41 7.81 86.69 0.68 16.09 16 19 O -0.56 -16.31 16.52 -4.01 -0.07 -16.38 16 20 C -0.12 -2.86 6.99 40.82 0.29 -2.57 16 21 C 0.11 1.71 10.49 83.85 0.88 2.59 16 22 N -0.34 -5.12 3.83 -324.03 -1.24 -6.36 16 23 C 0.10 0.71 5.05 45.52 0.23 0.94 16 24 C -0.14 -0.28 7.47 31.18 0.23 -0.04 16 25 C -0.12 -0.03 8.09 31.18 0.25 0.22 16 26 C -0.15 -0.66 7.88 31.12 0.25 -0.42 16 27 N -0.09 -2.13 13.78 37.02 0.51 -1.62 16 28 N -0.23 -5.84 12.04 -50.00 -0.60 -6.44 16 29 C -0.11 -2.73 6.14 31.32 0.19 -2.54 16 30 H 0.24 15.58 6.77 -92.71 -0.63 14.95 16 31 H 0.36 19.54 6.47 -92.71 -0.60 18.94 16 32 H 0.02 0.71 8.02 -2.39 -0.02 0.69 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.88 7.97 -2.39 -0.02 1.86 16 36 H 0.06 1.70 8.04 -2.39 -0.02 1.68 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.41 9.71 8.01 -92.71 -0.74 8.97 16 39 H 0.23 2.07 6.79 -2.91 -0.02 2.05 16 40 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.15 6.39 -2.39 -0.02 0.13 16 42 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 1.90 7.31 -2.39 -0.02 1.88 16 48 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -77.99 392.15 1.93 -76.05 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.21 Total: 30.98 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 5.30 Total: -8.66 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -5.14 Total: -137.42 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.07 Total: -16.38 kcal Atomic # 14 Polarization: 53.38 SS G_CDS: 2.05 Total: 55.43 kcal Total: -77.99 1.93 -76.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.896 kcal (2) G-P(sol) polarization free energy of solvation -77.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds