Wall clock time and date at job start Tue Mar 31 2020 18:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48499 * 109.46754 * 269.99982 * 3 2 1 5 5 H 1.48504 * 109.47124 * 29.99399 * 3 2 1 6 6 H 1.48494 * 109.47176 * 149.99677 * 3 2 1 7 7 C 1.38807 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00106 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00105 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47340 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.43415 * 52.45770 * 11 10 9 13 13 C 1.54888 * 110.59937 * 289.84214 * 11 10 9 14 14 C 1.54891 * 102.75120 * 203.32247 * 13 11 10 15 15 C 1.54267 * 104.19324 * 37.94011 * 14 13 11 16 16 H 1.08998 * 110.03405 * 95.67701 * 15 14 13 17 17 N 1.46504 * 110.02925 * 217.10695 * 15 14 13 18 18 C 1.34773 * 120.00129 * 272.16360 * 17 15 14 19 19 O 1.21602 * 119.99987 * 0.02562 * 18 17 15 20 20 C 1.47516 * 120.00376 * 180.02562 * 18 17 15 21 21 C 1.36600 * 125.77651 * 180.02562 * 20 18 17 22 22 N 1.34807 * 106.84162 * 179.97438 * 21 20 18 23 23 C 1.46504 * 126.59366 * 179.97438 * 22 21 20 24 24 C 1.53778 * 113.61579 * 14.12781 * 23 22 21 25 25 C 1.53950 * 87.01978 * 220.05468 * 24 23 22 26 26 C 1.53779 * 87.11625 * 25.36236 * 25 24 23 27 27 N 1.40210 * 106.81329 * 359.97438 * 22 21 20 28 28 N 1.28760 * 108.36790 * 359.75391 * 27 22 21 29 29 C 1.53876 * 106.59870 * 336.39035 * 15 14 13 30 30 H 0.96998 * 120.00210 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00026 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47305 * 59.99983 * 10 9 7 33 33 H 1.09005 * 109.47253 * 299.99432 * 10 9 7 34 34 H 1.09005 * 110.75648 * 321.63477 * 13 11 10 35 35 H 1.08999 * 110.75852 * 85.00408 * 13 11 10 36 36 H 1.09004 * 110.48613 * 279.26383 * 14 13 11 37 37 H 1.08994 * 110.48745 * 156.61801 * 14 13 11 38 38 H 0.97000 * 119.99744 * 92.17221 * 17 15 14 39 39 H 1.07994 * 126.57404 * 359.97438 * 21 20 18 40 40 H 1.08992 * 112.84858 * 145.33111 * 23 22 21 41 41 H 1.09007 * 113.61339 * 334.56965 * 24 23 22 42 42 H 1.08993 * 113.61421 * 105.46976 * 24 23 22 43 43 H 1.09007 * 113.53702 * 270.80885 * 25 24 23 44 44 H 1.09002 * 113.74584 * 139.95010 * 25 24 23 45 45 H 1.08998 * 113.61636 * 220.09210 * 26 25 24 46 46 H 1.09001 * 113.61227 * 89.18751 * 26 25 24 47 47 H 1.08998 * 110.02768 * 119.28860 * 29 15 14 48 48 H 1.08999 * 110.02894 * 240.66545 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8768 -1.5090 0.8112 13 6 6.0623 -1.6090 -1.3623 14 6 7.5705 -1.9590 -1.4069 15 6 7.6527 -3.3601 -0.7667 16 1 7.6469 -4.1260 -1.5423 17 7 8.8699 -3.4721 0.0409 18 6 10.0228 -3.8738 -0.5299 19 8 10.0528 -4.1429 -1.7154 20 6 11.2483 -3.9871 0.2833 21 6 12.4750 -4.3803 -0.1713 22 7 13.3121 -4.3467 0.8848 23 6 14.7368 -4.6880 0.8811 24 6 15.3438 -4.7833 -0.5286 25 6 16.1277 -6.0072 -0.0210 26 6 15.0094 -6.1954 1.0176 27 7 12.5571 -3.9223 1.9874 28 7 11.3483 -3.7146 1.5957 29 6 6.4103 -3.5077 0.1291 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8492 -3.0430 -0.8875 33 1 3.8486 -3.0417 0.8925 34 1 5.5292 -2.0922 -2.1813 35 1 5.9153 -0.5293 -1.3882 36 1 8.1465 -1.2393 -0.8252 37 1 7.9248 -1.9890 -2.4372 38 1 8.8460 -3.2573 0.9865 39 1 12.7258 -4.6636 -1.1828 40 1 15.3207 -4.0749 1.5674 41 1 14.6146 -5.0223 -1.3028 42 1 15.9771 -3.9355 -0.7895 43 1 17.0931 -5.7546 0.4176 44 1 16.1917 -6.8189 -0.7458 45 1 15.3732 -6.4859 2.0032 46 1 14.1886 -6.8211 0.6670 47 1 5.8017 -4.3452 -0.2118 48 1 6.7130 -3.6636 1.1646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332262724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:52 Heat of formation + Delta-G solvation = 86.067919 kcal Electronic energy + Delta-G solvation = -27557.687052 eV Core-core repulsion = 23650.402827 eV Total energy + Delta-G solvation = -3907.284225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.67973 -39.98984 -39.40496 -37.98972 -34.96551 -33.78937 -33.20112 -31.49847 -31.05822 -29.01170 -28.03963 -26.67758 -26.57251 -24.64909 -23.64842 -22.82770 -21.81910 -20.94093 -20.36413 -20.24225 -19.80332 -18.71461 -17.47837 -16.86020 -16.66042 -16.46680 -16.07104 -15.25261 -15.08606 -14.69739 -14.64703 -14.37877 -13.94424 -13.86120 -13.45387 -13.35776 -13.25670 -13.20724 -12.72266 -12.59477 -12.43599 -12.33182 -11.88916 -11.66288 -11.62586 -11.57059 -11.30208 -11.21022 -10.89924 -10.75339 -10.67832 -10.52817 -10.33825 -10.32673 -10.21519 -9.98703 -9.67387 -9.53775 -9.09697 -8.83417 -7.16232 -5.71814 -3.06417 0.73385 1.40460 1.55779 2.96434 3.07851 3.35556 3.41442 3.44354 3.48978 3.56145 3.84109 3.86529 3.90468 4.28086 4.44219 4.59941 4.63955 4.68639 4.72071 4.73247 4.78778 4.91556 5.01981 5.02441 5.10017 5.12087 5.34089 5.43519 5.47450 5.54073 5.57473 5.59873 5.63379 5.82444 5.87745 5.95175 5.97636 6.04734 6.14520 6.23824 6.43736 6.48284 6.54283 6.76561 6.88829 7.29525 7.62330 8.01862 8.05476 8.47651 9.27533 10.00095 10.20550 11.46839 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.033678 B = 0.001766 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.211769 B =15852.076873 C =15948.977157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.164 3.836 11 C -0.101 4.101 12 H 0.075 0.925 13 C -0.114 4.114 14 C -0.134 4.134 15 C 0.141 3.859 16 H 0.094 0.906 17 N -0.706 5.706 18 C 0.604 3.396 19 O -0.541 6.541 20 C -0.101 4.101 21 C 0.092 3.908 22 N -0.350 5.350 23 C 0.121 3.879 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.145 4.145 27 N -0.064 5.064 28 N -0.205 5.205 29 C -0.122 4.122 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.408 0.592 39 H 0.202 0.798 40 H 0.135 0.865 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.346 -12.880 -0.378 39.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.037 3.963 11 C -0.120 4.120 12 H 0.093 0.907 13 C -0.152 4.152 14 C -0.173 4.173 15 C 0.037 3.963 16 H 0.112 0.888 17 N -0.356 5.356 18 C 0.388 3.612 19 O -0.418 6.418 20 C -0.240 4.240 21 C -0.065 4.065 22 N -0.135 5.135 23 C 0.019 3.981 24 C -0.186 4.186 25 C -0.173 4.173 26 C -0.184 4.184 27 N -0.044 5.044 28 N -0.079 5.079 29 C -0.161 4.161 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.244 0.756 39 H 0.219 0.781 40 H 0.153 0.847 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 37.158 -12.835 0.290 39.314 hybrid contribution 0.670 1.159 -0.462 1.416 sum 37.828 -11.676 -0.172 39.590 Atomic orbital electron populations 1.69704 1.05096 1.25730 1.57884 1.24665 0.95228 0.97165 1.02213 0.86546 0.79221 0.85021 0.77765 1.21087 1.21803 1.20345 1.19084 0.80771 0.94706 1.42618 0.89266 1.42701 1.03950 1.02322 1.91110 1.20679 0.87884 0.89208 0.98519 1.22207 0.96178 0.95873 0.97788 0.90693 1.22505 0.93792 1.01237 0.97639 1.22801 0.97650 0.95859 1.00943 1.21781 0.82584 0.98440 0.93487 0.88834 1.46054 1.08637 1.67163 1.13744 1.16760 0.81696 0.76873 0.85868 1.90809 1.85124 1.51149 1.14672 1.21520 0.96045 1.14741 0.91725 1.23234 0.89477 0.98313 0.95440 1.50592 1.10351 1.45102 1.07427 1.23481 0.75173 0.98339 1.01099 1.23515 1.00062 1.00308 0.94713 1.22746 0.97700 0.98146 0.98746 1.23453 0.99616 0.93807 1.01508 1.82008 0.96631 1.18502 1.07245 1.74654 1.11368 1.11506 1.10332 1.22425 0.95033 0.99126 0.99516 0.93139 0.80692 0.95355 0.95659 0.90760 0.91378 0.91426 0.91275 0.75628 0.78126 0.84744 0.88512 0.89206 0.88932 0.89637 0.89512 0.88943 0.90167 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.88 13.97 55.49 0.78 -29.10 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.52 27.74 -169.99 -4.71 17.81 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 N -0.76 -18.20 5.30 -59.90 -0.32 -18.52 16 10 C 0.16 3.17 5.55 -4.04 -0.02 3.14 16 11 C -0.10 -1.52 2.88 -88.96 -0.26 -1.78 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.64 6.20 -24.74 -0.15 -1.79 16 14 C -0.13 -1.69 6.53 -25.07 -0.16 -1.85 16 15 C 0.14 1.69 3.25 -66.81 -0.22 1.47 16 16 H 0.09 1.19 7.57 -51.93 -0.39 0.79 16 17 N -0.71 -8.03 5.03 -53.76 -0.27 -8.30 16 18 C 0.60 7.43 7.81 -12.48 -0.10 7.33 16 19 O -0.54 -7.86 16.52 5.28 0.09 -7.77 16 20 C -0.10 -1.10 6.99 -83.55 -0.58 -1.68 16 21 C 0.09 0.74 10.49 -16.84 -0.18 0.56 16 22 N -0.35 -2.63 3.83 -53.77 -0.21 -2.83 16 23 C 0.12 0.45 5.05 -67.11 -0.34 0.11 16 24 C -0.15 -0.27 7.47 -25.83 -0.19 -0.46 16 25 C -0.14 -0.15 8.09 -25.83 -0.21 -0.35 16 26 C -0.15 -0.39 7.88 -25.92 -0.20 -0.60 16 27 N -0.06 -0.70 13.78 60.35 0.83 0.14 16 28 N -0.20 -2.41 12.04 32.85 0.40 -2.01 16 29 C -0.12 -1.48 6.14 -25.61 -0.16 -1.64 16 30 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 31 H 0.36 8.48 5.50 -40.82 -0.22 8.26 16 32 H 0.03 0.56 8.02 -51.93 -0.42 0.14 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.41 4.24 8.01 -40.82 -0.33 3.91 16 39 H 0.20 1.05 6.78 -52.49 -0.36 0.69 16 40 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.17 6.39 -51.92 -0.33 -0.16 16 42 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 44 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 48 H 0.07 0.79 7.62 -51.93 -0.40 0.39 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -35.55 390.76 -8.06 -43.60 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.50 Total: 5.78 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.03 Total: -4.69 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 1.21 Total: -60.63 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.55 -8.06 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.673 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds