Wall clock time and date at job start Tue Mar 31 2020 18:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48499 * 109.46754 * 269.99982 * 3 2 1 5 5 H 1.48504 * 109.47124 * 29.99399 * 3 2 1 6 6 H 1.48494 * 109.47176 * 149.99677 * 3 2 1 7 7 C 1.38807 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00106 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00105 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47340 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.43415 * 52.45770 * 11 10 9 13 13 C 1.54888 * 110.59937 * 289.84214 * 11 10 9 14 14 C 1.54891 * 102.75120 * 203.32247 * 13 11 10 15 15 C 1.54267 * 104.19324 * 37.94011 * 14 13 11 16 16 H 1.08998 * 110.03405 * 95.67701 * 15 14 13 17 17 N 1.46504 * 110.02925 * 217.10695 * 15 14 13 18 18 C 1.34773 * 120.00129 * 272.16360 * 17 15 14 19 19 O 1.21602 * 119.99987 * 0.02562 * 18 17 15 20 20 C 1.47516 * 120.00376 * 180.02562 * 18 17 15 21 21 C 1.36600 * 125.77651 * 180.02562 * 20 18 17 22 22 N 1.34807 * 106.84162 * 179.97438 * 21 20 18 23 23 C 1.46504 * 126.59366 * 179.97438 * 22 21 20 24 24 C 1.53778 * 113.61579 * 14.12781 * 23 22 21 25 25 C 1.53950 * 87.01978 * 220.05468 * 24 23 22 26 26 C 1.53779 * 87.11625 * 25.36236 * 25 24 23 27 27 N 1.40210 * 106.81329 * 359.97438 * 22 21 20 28 28 N 1.28760 * 108.36790 * 359.75391 * 27 22 21 29 29 C 1.53876 * 106.59870 * 336.39035 * 15 14 13 30 30 H 0.96998 * 120.00210 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00026 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47305 * 59.99983 * 10 9 7 33 33 H 1.09005 * 109.47253 * 299.99432 * 10 9 7 34 34 H 1.09005 * 110.75648 * 321.63477 * 13 11 10 35 35 H 1.08999 * 110.75852 * 85.00408 * 13 11 10 36 36 H 1.09004 * 110.48613 * 279.26383 * 14 13 11 37 37 H 1.08994 * 110.48745 * 156.61801 * 14 13 11 38 38 H 0.97000 * 119.99744 * 92.17221 * 17 15 14 39 39 H 1.07994 * 126.57404 * 359.97438 * 21 20 18 40 40 H 1.08992 * 112.84858 * 145.33111 * 23 22 21 41 41 H 1.09007 * 113.61339 * 334.56965 * 24 23 22 42 42 H 1.08993 * 113.61421 * 105.46976 * 24 23 22 43 43 H 1.09007 * 113.53702 * 270.80885 * 25 24 23 44 44 H 1.09002 * 113.74584 * 139.95010 * 25 24 23 45 45 H 1.08998 * 113.61636 * 220.09210 * 26 25 24 46 46 H 1.09001 * 113.61227 * 89.18751 * 26 25 24 47 47 H 1.08998 * 110.02768 * 119.28860 * 29 15 14 48 48 H 1.08999 * 110.02894 * 240.66545 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8768 -1.5090 0.8112 13 6 6.0623 -1.6090 -1.3623 14 6 7.5705 -1.9590 -1.4069 15 6 7.6527 -3.3601 -0.7667 16 1 7.6469 -4.1260 -1.5423 17 7 8.8699 -3.4721 0.0409 18 6 10.0228 -3.8738 -0.5299 19 8 10.0528 -4.1429 -1.7154 20 6 11.2483 -3.9871 0.2833 21 6 12.4750 -4.3803 -0.1713 22 7 13.3121 -4.3467 0.8848 23 6 14.7368 -4.6880 0.8811 24 6 15.3438 -4.7833 -0.5286 25 6 16.1277 -6.0072 -0.0210 26 6 15.0094 -6.1954 1.0176 27 7 12.5571 -3.9223 1.9874 28 7 11.3483 -3.7146 1.5957 29 6 6.4103 -3.5077 0.1291 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8492 -3.0430 -0.8875 33 1 3.8486 -3.0417 0.8925 34 1 5.5292 -2.0922 -2.1813 35 1 5.9153 -0.5293 -1.3882 36 1 8.1465 -1.2393 -0.8252 37 1 7.9248 -1.9890 -2.4372 38 1 8.8460 -3.2573 0.9865 39 1 12.7258 -4.6636 -1.1828 40 1 15.3207 -4.0749 1.5674 41 1 14.6146 -5.0223 -1.3028 42 1 15.9771 -3.9355 -0.7895 43 1 17.0931 -5.7546 0.4176 44 1 16.1917 -6.8189 -0.7458 45 1 15.3732 -6.4859 2.0032 46 1 14.1886 -6.8211 0.6670 47 1 5.8017 -4.3452 -0.2118 48 1 6.7130 -3.6636 1.1646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332262724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:51 Heat of formation + Delta-G solvation = 61.209630 kcal Electronic energy + Delta-G solvation = -27558.764988 eV Core-core repulsion = 23650.402827 eV Total energy + Delta-G solvation = -3908.362161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.35092 -40.89730 -39.76262 -39.11237 -36.59534 -34.88769 -34.09693 -33.24614 -32.03823 -30.36428 -29.14582 -27.09440 -26.83124 -26.17230 -24.56045 -23.66384 -23.35098 -21.78890 -21.34501 -21.11410 -20.56678 -19.55057 -19.32656 -17.58037 -17.40849 -17.17484 -16.67058 -16.45512 -16.15845 -16.00994 -15.77493 -15.47522 -15.10656 -14.92374 -14.63973 -14.40727 -14.19079 -13.78578 -13.74690 -13.52323 -13.47278 -13.26147 -12.93750 -12.93074 -12.85591 -12.36984 -12.19700 -12.06383 -11.95265 -11.86160 -11.78803 -11.66627 -11.57627 -11.51898 -11.47591 -11.21691 -11.15085 -10.93900 -10.43607 -10.02748 -9.26326 -8.01574 -5.34231 0.09556 0.57592 1.03937 1.38258 1.41781 1.49075 2.10185 2.20271 2.49472 3.05672 3.15306 3.29971 3.36594 3.50018 3.54717 3.66241 3.74523 3.75513 3.85645 3.88416 3.96962 4.14509 4.39383 4.46096 4.50969 4.52175 4.58978 4.62960 4.66502 4.66939 4.74512 4.75481 4.87536 4.89526 4.93159 5.05444 5.07559 5.09579 5.15537 5.23884 5.26768 5.36455 5.49718 5.52496 5.57364 5.77569 6.22858 6.41109 6.86973 7.10034 7.11695 7.87221 8.06605 9.20165 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.033678 B = 0.001766 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.211769 B =15852.076873 C =15948.977157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.235 4.235 8 H 0.055 0.945 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.093 4.093 12 H 0.077 0.923 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.089 0.911 17 N -0.700 5.700 18 C 0.606 3.394 19 O -0.567 6.567 20 C -0.123 4.123 21 C 0.106 3.894 22 N -0.337 5.337 23 C 0.104 3.896 24 C -0.142 4.142 25 C -0.124 4.124 26 C -0.146 4.146 27 N -0.091 5.091 28 N -0.225 5.225 29 C -0.113 4.113 30 H 0.257 0.743 31 H 0.366 0.634 32 H 0.026 0.974 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.413 0.587 39 H 0.230 0.770 40 H 0.145 0.855 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.983 -12.819 -0.615 42.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.366 4.366 8 H 0.073 0.927 9 N -0.403 5.403 10 C 0.034 3.966 11 C -0.112 4.112 12 H 0.096 0.904 13 C -0.152 4.152 14 C -0.163 4.163 15 C 0.043 3.957 16 H 0.107 0.893 17 N -0.351 5.351 18 C 0.391 3.609 19 O -0.445 6.445 20 C -0.263 4.263 21 C -0.052 4.052 22 N -0.121 5.121 23 C 0.004 3.996 24 C -0.181 4.181 25 C -0.162 4.162 26 C -0.185 4.185 27 N -0.071 5.071 28 N -0.098 5.098 29 C -0.151 4.151 30 H 0.066 0.934 31 H 0.199 0.801 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.250 0.750 39 H 0.246 0.754 40 H 0.162 0.838 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 40.864 -12.804 0.090 42.823 hybrid contribution -0.414 0.993 -0.395 1.147 sum 40.450 -11.810 -0.305 42.140 Atomic orbital electron populations 1.69890 1.07155 1.26646 1.59877 1.25513 0.96128 1.01278 1.02712 0.85404 0.78669 0.79544 0.78172 1.20322 1.22254 1.17599 1.19078 0.82931 0.93465 1.41130 0.92663 1.42707 1.02342 1.04321 1.90883 1.20862 0.90390 0.87214 0.98093 1.22088 0.93215 0.97588 0.98313 0.90447 1.22472 0.95044 1.00678 0.96967 1.22702 0.96188 0.96180 1.01190 1.21633 0.82751 0.97954 0.93336 0.89298 1.45992 1.08298 1.66834 1.13936 1.16913 0.82143 0.76234 0.85629 1.90789 1.85592 1.52451 1.15714 1.21492 0.96505 1.16616 0.91733 1.23637 0.88581 0.96545 0.96443 1.50886 1.11371 1.43395 1.06424 1.24042 0.73248 0.99234 1.03078 1.23563 1.00056 1.01076 0.93367 1.22739 0.97532 0.97872 0.98069 1.23465 1.00033 0.92657 1.02306 1.81925 0.96772 1.19683 1.08682 1.74614 1.12073 1.12229 1.10853 1.22337 0.94647 0.97547 1.00612 0.93381 0.80099 0.95616 0.95870 0.91418 0.92053 0.91026 0.91195 0.74959 0.75416 0.83789 0.88229 0.88119 0.87649 0.89000 0.89282 0.89911 0.89749 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.33 13.97 21.65 0.30 -64.03 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.96 46.32 27.74 68.60 1.90 48.22 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 7 C -0.23 -13.75 10.47 84.03 0.88 -12.87 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.76 -35.93 5.30 -343.44 -1.82 -37.75 16 10 C 0.16 6.07 5.55 86.38 0.48 6.54 16 11 C -0.09 -2.63 2.88 -9.72 -0.03 -2.66 16 12 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 13 C -0.11 -3.10 6.20 31.89 0.20 -2.90 16 14 C -0.12 -2.90 6.53 31.67 0.21 -2.69 16 15 C 0.15 3.29 3.25 45.72 0.15 3.44 16 16 H 0.09 2.13 7.57 -2.39 -0.02 2.11 16 17 N -0.70 -14.90 5.03 -442.26 -2.23 -17.13 16 18 C 0.61 14.19 7.81 86.69 0.68 14.87 16 19 O -0.57 -15.78 16.52 -4.04 -0.07 -15.85 16 20 C -0.12 -2.55 6.99 40.81 0.29 -2.27 16 21 C 0.11 1.53 10.49 83.85 0.88 2.41 16 22 N -0.34 -4.55 3.83 -324.04 -1.24 -5.79 16 23 C 0.10 0.57 5.05 45.52 0.23 0.80 16 24 C -0.14 -0.13 7.47 31.18 0.23 0.10 16 25 C -0.12 0.07 8.09 31.18 0.25 0.32 16 26 C -0.15 -0.52 7.88 31.12 0.25 -0.27 16 27 N -0.09 -1.91 13.78 37.02 0.51 -1.40 16 28 N -0.22 -5.14 12.04 -49.99 -0.60 -5.74 16 29 C -0.11 -2.52 6.14 31.32 0.19 -2.33 16 30 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 31 H 0.37 16.53 5.50 -92.71 -0.51 16.02 16 32 H 0.03 1.00 8.02 -2.38 -0.02 0.98 16 33 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.07 1.94 7.97 -2.38 -0.02 1.92 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.64 8.05 -2.38 -0.02 1.62 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.41 7.96 8.01 -92.71 -0.74 7.22 16 39 H 0.23 1.81 6.78 -2.91 -0.02 1.79 16 40 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.10 0.06 6.39 -2.38 -0.02 0.04 16 42 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.11 -0.29 8.14 -2.38 -0.02 -0.31 16 44 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.08 1.85 7.84 -2.39 -0.02 1.83 16 48 H 0.09 1.70 7.62 -2.39 -0.02 1.68 16 Total: -1.00 -77.66 390.76 1.78 -75.88 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.33 Total: 24.55 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.35 Total: -0.97 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -5.07 Total: -131.83 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.07 Total: -15.85 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -77.66 1.78 -75.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.085 kcal (2) G-P(sol) polarization free energy of solvation -77.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds