Wall clock time and date at job start Tue Mar 31 2020 17:14:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.47111 * 2 1
4 4 N 1.46506 * 109.46697 * 119.99962 * 2 1 3
5 5 S 1.65599 * 119.99730 * 264.47758 * 4 2 1
6 6 O 1.42108 * 104.27736 * 308.93191 * 5 4 2
7 7 O 1.42101 * 104.27816 * 181.07542 * 5 4 2
8 8 C 1.81402 * 104.45142 * 64.99931 * 5 4 2
9 9 C 1.52998 * 109.47016 * 179.97438 * 8 5 4
10 10 C 1.53010 * 109.46890 * 180.02562 * 9 8 5
11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 8
12 12 H 1.07998 * 120.00385 * 0.02562 * 11 10 9
13 13 C 1.37876 * 119.99731 * 180.27773 * 11 10 9
14 14 N 1.31516 * 119.99937 * 359.72262 * 13 11 10
15 15 Si 1.86802 * 120.00087 * 179.72776 * 13 11 10
16 16 H 1.48500 * 109.47086 * 359.97438 * 15 13 11
17 17 H 1.48497 * 109.47322 * 120.00025 * 15 13 11
18 18 H 1.48502 * 109.46796 * 239.99918 * 15 13 11
19 19 C 1.52997 * 109.47058 * 239.99536 * 2 1 3
20 20 H 1.09003 * 109.48504 * 177.49654 * 19 2 1
21 21 C 1.53050 * 109.49233 * 297.55880 * 19 2 1
22 22 N 1.46949 * 109.36661 * 178.36806 * 21 19 2
23 23 C 1.46904 * 110.99978 * 176.81236 * 22 21 19
24 24 C 1.46956 * 110.88152 * 300.68185 * 22 21 19
25 25 C 1.53045 * 109.36557 * 59.32040 * 24 22 21
26 26 N 1.46956 * 109.48917 * 57.45229 * 19 2 1
27 27 C 1.46896 * 110.99896 * 56.84088 * 26 19 2
28 28 H 1.09004 * 109.47634 * 300.00610 * 1 2 3
29 29 H 1.09000 * 109.47156 * 60.00142 * 1 2 3
30 30 H 1.08996 * 109.47442 * 180.02562 * 1 2 3
31 31 H 0.96989 * 120.00351 * 84.48057 * 4 2 1
32 32 H 1.08998 * 109.46682 * 60.00107 * 8 5 4
33 33 H 1.08998 * 109.47307 * 300.00146 * 8 5 4
34 34 H 1.08998 * 109.47052 * 60.00647 * 9 8 5
35 35 H 1.08997 * 109.47918 * 300.00105 * 9 8 5
36 36 H 1.08998 * 109.46885 * 60.00373 * 10 9 8
37 37 H 1.08998 * 109.47230 * 300.00335 * 10 9 8
38 38 H 0.97000 * 119.99707 * 180.02562 * 14 13 11
39 39 H 1.09001 * 109.48853 * 298.33878 * 21 19 2
40 40 H 1.09001 * 109.48781 * 58.39536 * 21 19 2
41 41 H 1.09007 * 109.47013 * 179.84739 * 23 22 21
42 42 H 1.09005 * 109.46887 * 299.84149 * 23 22 21
43 43 H 1.08994 * 109.46942 * 59.84768 * 23 22 21
44 44 H 1.08996 * 109.48837 * 299.34922 * 24 22 21
45 45 H 1.09006 * 109.48841 * 179.28838 * 24 22 21
46 46 H 1.09001 * 109.48928 * 181.63095 * 25 24 22
47 47 H 1.09003 * 109.50891 * 61.57554 * 25 24 22
48 48 H 1.09003 * 109.47377 * 53.55164 * 27 26 19
49 49 H 1.09004 * 109.47105 * 173.54158 * 27 26 19
50 50 H 1.09001 * 109.47408 * 293.54728 * 27 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0182 -0.6906 1.1963
5 16 2.4243 0.1783 2.5462
6 8 3.3050 1.1839 2.0639
7 8 2.8694 -0.8022 3.4734
8 6 0.8606 0.9135 3.0986
9 6 1.1066 1.7507 4.3554
10 6 -0.2124 2.3703 4.8217
11 6 0.0300 3.1954 6.0592
12 1 1.0252 3.2707 6.4716
13 6 -1.0199 3.8499 6.6679
14 7 -2.2318 3.7585 6.1653
15 14 -0.7208 4.8665 8.2062
16 1 0.7187 4.8078 8.5662
17 1 -1.1108 6.2765 7.9514
18 1 -1.5328 4.3227 9.3244
19 6 2.0399 -0.7213 -1.2492
20 1 3.1290 -0.6828 -1.2721
21 6 1.5808 -2.1810 -1.2192
22 7 2.0388 -2.8611 -2.4387
23 6 1.6822 -4.2859 -2.4125
24 6 1.4995 -2.2052 -3.6381
25 6 1.9587 -0.7455 -3.6682
26 7 1.5007 -0.0655 -2.4486
27 6 1.8573 1.3593 -2.4748
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 2.1037 -1.6568 1.1976
32 1 0.1465 0.1215 3.3241
33 1 0.4599 1.5504 2.3100
34 1 1.8209 2.5427 4.1303
35 1 1.5071 1.1136 5.1439
36 1 -0.9264 1.5780 5.0469
37 1 -0.6133 3.0074 4.0334
38 1 -2.9703 4.2193 6.5934
39 1 2.0034 -2.6773 -0.3455
40 1 0.4927 -2.2190 -1.1684
41 1 2.0304 -4.7646 -3.3278
42 1 2.1521 -4.7623 -1.5520
43 1 0.5996 -4.3881 -2.3382
44 1 0.4105 -2.2435 -3.6149
45 1 1.8629 -2.7191 -4.5281
46 1 1.5361 -0.2493 -4.5418
47 1 3.0468 -0.7072 -3.7190
48 1 2.9363 1.4660 -2.3627
49 1 1.5460 1.7944 -3.4245
50 1 1.3543 1.8749 -1.6566
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001339857939.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:14:17
Heat of formation + Delta-G solvation = -67.824118 kcal
Electronic energy + Delta-G solvation = -28100.776584 eV
Core-core repulsion = 24289.970300 eV
Total energy + Delta-G solvation = -3810.806284 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 333.187 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.23057 -37.02806 -36.61521 -35.75483 -35.41873 -34.68313 -32.20229 -31.22589
-29.56548 -29.10924 -27.77343 -25.72264 -24.86012 -23.74937 -23.34423 -21.67707
-20.66845 -19.60217 -19.25103 -17.69690 -16.87195 -16.50664 -16.12150 -15.73939
-15.69397 -15.47175 -15.17173 -15.00401 -14.64175 -14.48324 -14.33077 -14.14616
-13.59454 -13.32941 -12.84692 -12.76241 -12.56412 -12.36966 -12.20303 -12.12294
-11.98162 -11.93354 -11.86899 -11.82109 -11.75285 -11.65162 -11.31200 -11.23917
-11.15377 -10.93699 -10.81411 -10.62449 -10.40912 -9.95420 -9.76946 -9.33345
-9.08159 -8.79549 -8.61354 -8.41314 -6.06080 -4.08924 0.46100 2.78586
3.29204 3.36804 3.41760 3.50121 3.55505 3.94418 4.29814 4.41404
4.42411 4.50523 4.59594 4.77232 4.86072 4.94253 5.00190 5.04303
5.10396 5.15935 5.17989 5.18690 5.25683 5.27166 5.30512 5.33584
5.39698 5.50428 5.51371 5.54885 5.67314 5.69235 5.75086 5.90582
6.03480 6.18169 6.26895 6.45358 6.52775 6.54704 6.72961 6.74521
6.86652 6.90952 7.57059 7.66827 7.92227 8.32749 8.97606 9.55880
11.05164
Molecular weight = 333.19amu
Principal moments of inertia in cm(-1)
A = 0.021016 B = 0.002508 C = 0.002428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1332.024144 B =11160.347757 C =11529.448682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.150 3.850
3 H 0.096 0.904
4 N -1.120 6.120
5 S 2.599 3.401
6 O -0.963 6.963
7 O -0.963 6.963
8 C -0.609 4.609
9 C -0.106 4.106
10 C 0.031 3.969
11 C -0.525 4.525
12 H 0.058 0.942
13 C 0.057 3.943
14 N -0.895 5.895
15 Si 0.894 3.106
16 H -0.272 1.272
17 H -0.283 1.283
18 H -0.283 1.283
19 C 0.086 3.914
20 H 0.060 0.940
21 C 0.058 3.942
22 N -0.546 5.546
23 C 0.025 3.975
24 C 0.056 3.944
25 C 0.057 3.943
26 N -0.534 5.534
27 C 0.015 3.985
28 H 0.063 0.937
29 H 0.081 0.919
30 H 0.063 0.937
31 H 0.412 0.588
32 H 0.130 0.870
33 H 0.128 0.872
34 H 0.065 0.935
35 H 0.065 0.935
36 H 0.021 0.979
37 H 0.021 0.979
38 H 0.261 0.739
39 H 0.080 0.920
40 H 0.053 0.947
41 H 0.068 0.932
42 H 0.069 0.931
43 H 0.027 0.973
44 H 0.044 0.956
45 H 0.079 0.921
46 H 0.082 0.918
47 H 0.043 0.957
48 H 0.032 0.968
49 H 0.070 0.930
50 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.767 -13.174 -22.536 26.733
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.042 3.958
3 H 0.114 0.886
4 N -0.878 5.878
5 S 2.695 3.305
6 O -0.952 6.952
7 O -0.954 6.954
8 C -0.741 4.741
9 C -0.145 4.145
10 C -0.008 4.008
11 C -0.563 4.563
12 H 0.077 0.923
13 C -0.144 4.144
14 N -0.534 5.534
15 Si 0.721 3.279
16 H -0.196 1.196
17 H -0.209 1.209
18 H -0.210 1.210
19 C -0.025 4.025
20 H 0.078 0.922
21 C -0.071 4.071
22 N -0.271 5.271
23 C -0.123 4.123
24 C -0.073 4.073
25 C -0.071 4.071
26 N -0.260 5.260
27 C -0.133 4.133
28 H 0.082 0.918
29 H 0.100 0.900
30 H 0.082 0.918
31 H 0.247 0.753
32 H 0.148 0.852
33 H 0.147 0.853
34 H 0.084 0.916
35 H 0.084 0.916
36 H 0.039 0.961
37 H 0.039 0.961
38 H 0.070 0.930
39 H 0.098 0.902
40 H 0.071 0.929
41 H 0.087 0.913
42 H 0.088 0.912
43 H 0.046 0.954
44 H 0.062 0.938
45 H 0.097 0.903
46 H 0.100 0.900
47 H 0.061 0.939
48 H 0.051 0.949
49 H 0.089 0.911
50 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 6.482 -12.873 -22.173 26.446
hybrid contribution -0.696 0.188 0.697 1.002
sum 5.787 -12.686 -21.477 25.606
Atomic orbital electron populations
1.22426 0.94247 1.03200 1.03372 1.20804 0.94959 0.96395 0.83672
0.88574 1.55853 1.84371 1.19589 1.27990 1.05347 0.77618 0.74505
0.73042 1.93568 1.61587 1.60866 1.79219 1.93578 1.80268 1.59059
1.62452 1.30645 1.20854 1.12322 1.10247 1.21506 1.03565 0.97691
0.91765 1.19063 0.89883 0.95583 0.96224 1.21292 0.94650 1.29697
1.10699 0.92331 1.25021 0.95122 0.96646 0.97619 1.69968 0.99616
1.43487 1.40356 0.86506 0.78439 0.79936 0.82977 1.19607 1.20943
1.20954 1.21825 0.97996 0.93150 0.89498 0.92221 1.22268 0.99123
0.93063 0.92605 1.62118 1.59729 1.02758 1.02468 1.22355 0.98809
0.88273 1.02889 1.22184 0.98035 0.93991 0.93044 1.22175 0.98711
0.93640 0.92603 1.62140 1.59384 1.02827 1.01640 1.22506 0.99449
0.88148 1.03218 0.91843 0.90016 0.91840 0.75278 0.85169 0.85349
0.91590 0.91598 0.96107 0.96107 0.92962 0.90208 0.92906 0.91330
0.91174 0.95439 0.93808 0.90305 0.89960 0.93854 0.94948 0.91100
0.90494
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.60 8.94 37.16 0.33 -1.26 16
2 C 0.15 1.49 2.13 -67.93 -0.14 1.35 16
3 H 0.10 1.02 5.99 -51.93 -0.31 0.71 16
4 N -1.12 -12.05 5.32 -4.89 -0.03 -12.08 16
5 S 2.60 38.01 5.44 -107.50 -0.58 37.43 16
6 O -0.96 -16.81 17.39 -57.54 -1.00 -17.81 16
7 O -0.96 -16.91 18.08 -57.54 -1.04 -17.96 16
8 C -0.61 -9.22 5.24 37.16 0.19 -9.03 16
9 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16
10 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16
11 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16
12 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16
13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
14 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16
15 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16
16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
19 C 0.09 0.80 1.97 -67.66 -0.13 0.67 16
20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
21 C 0.06 0.49 4.38 -3.77 -0.02 0.48 16
22 N -0.55 -4.49 4.97 -242.76 -1.21 -5.70 16
23 C 0.02 0.16 9.60 60.07 0.58 0.74 16
24 C 0.06 0.40 5.62 -3.77 -0.02 0.38 16
25 C 0.06 0.42 5.61 -3.77 -0.02 0.40 16
26 N -0.53 -4.52 3.92 -234.73 -0.92 -5.44 16
27 C 0.01 0.12 8.85 60.06 0.53 0.65 16
28 H 0.06 0.61 5.85 -51.93 -0.30 0.31 16
29 H 0.08 0.73 7.15 -51.93 -0.37 0.36 16
30 H 0.06 0.54 6.46 -51.93 -0.34 0.21 16
31 H 0.41 3.73 6.90 -34.46 -0.24 3.49 16
32 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16
33 H 0.13 1.72 6.82 -51.93 -0.35 1.37 16
34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16
38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
39 H 0.08 0.64 6.50 -51.93 -0.34 0.30 16
40 H 0.05 0.46 6.41 -51.93 -0.33 0.12 16
41 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16
42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16
44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
45 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16
46 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16
47 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
48 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16
49 H 0.07 0.46 8.02 -51.93 -0.42 0.05 16
50 H 0.08 0.62 6.36 -51.93 -0.33 0.29 16
LS Contribution 392.68 15.07 5.92 5.92
Total: -1.00 -34.64 392.68 -11.32 -45.96
By element:
Atomic # 1 Polarization: 8.46 SS G_CDS: -8.78 Total: -0.33 kcal
Atomic # 6 Polarization: -21.40 SS G_CDS: 0.61 Total: -20.79 kcal
Atomic # 7 Polarization: -47.55 SS G_CDS: -1.42 Total: -48.97 kcal
Atomic # 8 Polarization: -33.72 SS G_CDS: -2.04 Total: -35.77 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Atomic # 16 Polarization: 38.01 SS G_CDS: -0.58 Total: 37.43 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -34.64 -11.32 -45.96 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001339857939.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.862 kcal
(2) G-P(sol) polarization free energy of solvation -34.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds