Wall clock time and date at job start Tue Mar 31 2020 17:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46712 * 2 1 4 4 N 1.46494 * 109.47230 * 240.00103 * 2 1 3 5 5 S 1.65603 * 120.00396 * 94.99580 * 4 2 1 6 6 O 1.42098 * 104.27362 * 308.92867 * 5 4 2 7 7 O 1.42092 * 104.27647 * 181.07115 * 5 4 2 8 8 C 1.81398 * 104.44686 * 64.99820 * 5 4 2 9 9 C 1.53002 * 109.47071 * 180.02562 * 8 5 4 10 10 C 1.52995 * 109.47213 * 180.02562 * 9 8 5 11 11 C 1.50703 * 109.47100 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00125 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99722 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00138 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47556 * 90.00077 * 15 13 11 17 17 H 1.48503 * 109.47327 * 210.00169 * 15 13 11 18 18 H 1.48502 * 109.47048 * 330.00080 * 15 13 11 19 19 C 1.53003 * 109.47143 * 119.99329 * 2 1 3 20 20 H 1.08993 * 109.48880 * 305.49339 * 19 2 1 21 21 C 1.53048 * 109.48656 * 65.53638 * 19 2 1 22 22 N 1.46956 * 109.36338 * 178.34444 * 21 19 2 23 23 C 1.46904 * 111.00085 * 176.83637 * 22 21 19 24 24 C 1.46965 * 110.89557 * 300.70900 * 22 21 19 25 25 C 1.53051 * 109.36129 * 59.31119 * 24 22 21 26 26 N 1.46957 * 109.36611 * 301.59492 * 25 24 22 27 27 C 1.46900 * 110.99933 * 183.18841 * 26 25 24 28 28 H 1.09007 * 109.46561 * 173.23130 * 1 2 3 29 29 H 1.09003 * 109.47257 * 293.22779 * 1 2 3 30 30 H 1.09001 * 109.47355 * 53.23313 * 1 2 3 31 31 H 0.97007 * 119.99611 * 274.99399 * 4 2 1 32 32 H 1.08998 * 109.47148 * 60.00092 * 8 5 4 33 33 H 1.09001 * 109.47161 * 300.00101 * 8 5 4 34 34 H 1.08998 * 109.47345 * 59.99862 * 9 8 5 35 35 H 1.09001 * 109.46924 * 299.99895 * 9 8 5 36 36 H 1.08998 * 109.47448 * 59.99471 * 10 9 8 37 37 H 1.09001 * 109.47179 * 299.99295 * 10 9 8 38 38 H 0.97006 * 120.00386 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.49351 * 298.33439 * 21 19 2 40 40 H 1.09001 * 109.48987 * 58.39722 * 21 19 2 41 41 H 1.08993 * 109.46853 * 187.77670 * 23 22 21 42 42 H 1.09001 * 109.46698 * 307.77413 * 23 22 21 43 43 H 1.08998 * 109.47411 * 67.77148 * 23 22 21 44 44 H 1.09000 * 109.49411 * 299.34290 * 24 22 21 45 45 H 1.09003 * 109.50259 * 179.28934 * 24 22 21 46 46 H 1.09000 * 109.48734 * 181.62588 * 25 24 22 47 47 H 1.09001 * 109.50735 * 61.57583 * 25 24 22 48 48 H 1.09000 * 109.47378 * 296.87007 * 27 26 25 49 49 H 1.08998 * 109.47029 * 56.86725 * 27 26 25 50 50 H 1.08996 * 109.46931 * 176.87138 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 0.1772 -2.5505 6 8 1.2750 0.9965 -2.7846 7 8 2.8122 -0.8076 -3.4935 8 6 3.8312 1.1873 -2.0441 9 6 4.2933 2.0454 -3.2236 10 6 5.4905 2.8969 -2.7967 11 6 5.9460 3.7416 -3.9587 12 1 5.4331 3.6772 -4.9070 13 6 7.0175 4.5967 -3.8112 14 7 7.6423 4.6747 -2.6567 15 14 7.5816 5.6441 -5.2512 16 1 6.8613 6.9426 -5.2312 17 1 9.0427 5.8870 -5.1443 18 1 7.2894 4.9356 -6.5232 19 6 2.0400 -0.7211 1.2493 20 1 1.5988 -0.2674 2.1367 21 6 1.6469 -2.1987 1.1822 22 7 2.1721 -2.8968 2.3639 23 6 1.7515 -4.3043 2.3741 24 6 3.6359 -2.7842 2.4317 25 6 4.0285 -1.3064 2.4991 26 7 3.5037 -0.6084 1.3171 27 6 3.9244 0.7990 1.3070 28 1 -0.3633 -1.0206 -0.1211 29 1 -0.3634 0.4053 0.9444 30 1 -0.3634 0.6151 -0.8232 31 1 2.1111 -1.6562 -1.1948 32 1 4.6458 0.5364 -1.7268 33 1 3.5398 1.8344 -1.2167 34 1 3.4785 2.6963 -3.5406 35 1 4.5845 1.3986 -4.0512 36 1 6.3051 2.2457 -2.4800 37 1 5.1996 3.5437 -1.9690 38 1 8.3964 5.2760 -2.5529 39 1 0.5606 -2.2855 1.1612 40 1 2.0652 -2.6457 0.2804 41 1 2.0349 -4.7613 3.3221 42 1 0.6698 -4.3611 2.2524 43 1 2.2376 -4.8348 1.5553 44 1 4.0771 -3.2376 1.5441 45 1 3.9996 -3.2981 3.3216 46 1 5.1148 -1.2194 2.5204 47 1 3.6102 -0.8594 3.4010 48 1 3.5038 1.3103 2.1729 49 1 5.0124 0.8533 1.3461 50 1 3.5693 1.2778 0.3945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339857953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:23 Heat of formation + Delta-G solvation = -65.420079 kcal Electronic energy + Delta-G solvation = -28682.918294 eV Core-core repulsion = 24872.216257 eV Total energy + Delta-G solvation = -3810.702037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.16405 -36.98558 -36.53762 -35.68991 -35.25708 -34.64105 -32.18677 -31.16453 -29.78891 -28.96230 -27.79288 -25.63531 -24.82462 -23.68620 -23.16778 -21.45969 -20.70467 -19.95830 -19.01504 -17.64839 -16.67585 -16.52660 -16.04672 -15.80508 -15.68790 -15.30374 -15.19000 -14.87718 -14.66921 -14.47194 -14.20327 -14.03437 -13.49074 -13.21967 -12.92469 -12.70493 -12.52084 -12.31643 -12.25435 -12.13125 -11.93823 -11.87982 -11.77897 -11.72256 -11.68295 -11.57466 -11.37055 -11.22266 -11.03477 -10.90305 -10.79639 -10.56114 -10.39296 -9.92439 -9.68220 -9.29461 -9.05125 -8.74141 -8.52159 -8.39817 -6.05026 -4.07655 0.54996 2.90129 3.30774 3.36945 3.41186 3.53818 3.58560 4.00006 4.31518 4.43028 4.44320 4.53905 4.68408 4.82305 4.92732 4.97902 5.03115 5.05356 5.09872 5.16479 5.20514 5.24361 5.31150 5.32298 5.35447 5.42464 5.46208 5.51590 5.54568 5.61600 5.67572 5.73409 5.82346 6.02561 6.04096 6.11287 6.30155 6.48833 6.58044 6.61430 6.83106 6.84434 6.89592 7.01660 7.58425 7.68991 7.93336 8.34290 8.98552 9.56941 11.06141 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.003085 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.406350 B = 9074.049832 C =10072.059026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.157 3.843 3 H 0.088 0.912 4 N -1.108 6.108 5 S 2.599 3.401 6 O -0.963 6.963 7 O -0.966 6.966 8 C -0.609 4.609 9 C -0.105 4.105 10 C 0.033 3.967 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.081 3.919 20 H 0.063 0.937 21 C 0.060 3.940 22 N -0.545 5.545 23 C 0.025 3.975 24 C 0.055 3.945 25 C 0.057 3.943 26 N -0.535 5.535 27 C 0.009 3.991 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.413 0.587 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.045 0.955 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.042 0.958 48 H 0.030 0.970 49 H 0.078 0.922 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 -15.655 14.204 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.866 5.866 5 S 2.694 3.306 6 O -0.953 6.953 7 O -0.956 6.956 8 C -0.741 4.741 9 C -0.144 4.144 10 C -0.006 4.006 11 C -0.564 4.564 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.029 4.029 20 H 0.081 0.919 21 C -0.068 4.068 22 N -0.270 5.270 23 C -0.123 4.123 24 C -0.074 4.074 25 C -0.071 4.071 26 N -0.260 5.260 27 C -0.138 4.138 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.249 0.751 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.048 0.952 49 H 0.096 0.904 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.806 -15.458 13.467 24.173 hybrid contribution 1.025 0.395 -0.078 1.101 sum -11.781 -15.063 13.389 23.344 Atomic orbital electron populations 1.22350 0.94393 1.03132 1.03189 1.20816 0.94475 0.95803 0.84103 0.89381 1.55692 1.82208 1.19261 1.29482 1.05318 0.76838 0.75070 0.73323 1.93565 1.47391 1.70592 1.83754 1.93568 1.84615 1.58195 1.59255 1.30666 1.19081 1.13937 1.10407 1.21490 1.01975 0.97755 0.93215 1.19037 0.90828 0.93825 0.96872 1.21265 1.14545 1.22814 0.97764 0.92426 1.25007 0.96416 0.97054 0.95867 1.69954 1.21783 1.38031 1.23657 0.86570 0.77784 0.80696 0.82845 1.20590 1.21195 1.19758 1.21979 0.88233 0.95763 0.96969 0.91898 1.22231 1.00056 0.93055 0.91505 1.62157 1.10909 1.13630 1.40272 1.22349 1.00982 0.87900 1.01105 1.22206 0.87346 0.96489 1.01311 1.22165 1.00165 0.93383 0.91375 1.62109 1.09589 1.14125 1.40193 1.22679 1.02232 0.87586 1.01353 0.91901 0.91597 0.90392 0.75117 0.84877 0.85813 0.91712 0.91674 0.96107 0.96212 0.92946 0.89792 0.93594 0.91319 0.91373 0.95401 0.93679 0.90316 0.89866 0.93943 0.95165 0.90367 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.11 37.16 0.34 -1.18 16 2 C 0.16 1.52 2.12 -67.93 -0.14 1.38 16 3 H 0.09 0.86 5.28 -51.92 -0.27 0.59 16 4 N -1.11 -12.28 5.25 -4.89 -0.03 -12.31 16 5 S 2.60 38.82 5.38 -107.50 -0.58 38.24 16 6 O -0.96 -16.69 17.25 -57.54 -0.99 -17.68 16 7 O -0.97 -17.47 18.08 -57.54 -1.04 -18.51 16 8 C -0.61 -9.43 5.28 37.16 0.20 -9.23 16 9 C -0.10 -2.12 5.16 -26.73 -0.14 -2.26 16 10 C 0.03 0.82 4.97 -27.88 -0.14 0.68 16 11 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 15 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 C 0.08 0.72 1.80 -67.65 -0.12 0.60 16 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 21 C 0.06 0.50 4.39 -3.77 -0.02 0.48 16 22 N -0.55 -4.49 4.97 -242.75 -1.21 -5.70 16 23 C 0.02 0.16 9.63 60.07 0.58 0.74 16 24 C 0.05 0.44 5.62 -3.76 -0.02 0.42 16 25 C 0.06 0.50 5.62 -3.77 -0.02 0.47 16 26 N -0.54 -5.19 4.72 -234.73 -1.11 -6.30 16 27 C 0.01 0.09 9.16 60.06 0.55 0.64 16 28 H 0.06 0.50 6.96 -51.92 -0.36 0.13 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.84 7.57 -51.93 -0.39 0.44 16 31 H 0.41 4.10 6.67 -34.48 -0.23 3.87 16 32 H 0.13 1.92 8.14 -51.93 -0.42 1.49 16 33 H 0.12 1.69 5.50 -51.92 -0.29 1.40 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.08 0.62 6.77 -51.93 -0.35 0.27 16 40 H 0.05 0.41 6.26 -51.93 -0.32 0.08 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 43 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.08 0.80 3.11 -51.93 -0.16 0.63 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -34.20 391.56 -11.36 -45.57 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.68 Total: 0.67 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 0.65 Total: -20.79 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -1.60 Total: -49.97 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -2.03 Total: -36.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 38.82 SS G_CDS: -0.58 Total: 38.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.20 -11.36 -45.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339857953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.852 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds