Wall clock time and date at job start Tue Mar 31 2020 17:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46712 * 2 1 4 4 N 1.46494 * 109.47230 * 240.00103 * 2 1 3 5 5 S 1.65603 * 120.00396 * 94.99580 * 4 2 1 6 6 O 1.42098 * 104.27362 * 308.92867 * 5 4 2 7 7 O 1.42092 * 104.27647 * 181.07115 * 5 4 2 8 8 C 1.81398 * 104.44686 * 64.99820 * 5 4 2 9 9 C 1.53002 * 109.47071 * 180.02562 * 8 5 4 10 10 C 1.52995 * 109.47213 * 180.02562 * 9 8 5 11 11 C 1.50703 * 109.47100 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00125 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99722 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00138 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47556 * 90.00077 * 15 13 11 17 17 H 1.48503 * 109.47327 * 210.00169 * 15 13 11 18 18 H 1.48502 * 109.47048 * 330.00080 * 15 13 11 19 19 C 1.53003 * 109.47143 * 119.99329 * 2 1 3 20 20 H 1.08993 * 109.48880 * 305.49339 * 19 2 1 21 21 C 1.53048 * 109.48656 * 65.53638 * 19 2 1 22 22 N 1.46956 * 109.36338 * 178.34444 * 21 19 2 23 23 C 1.46904 * 111.00085 * 176.83637 * 22 21 19 24 24 C 1.46965 * 110.89557 * 300.70900 * 22 21 19 25 25 C 1.53051 * 109.36129 * 59.31119 * 24 22 21 26 26 N 1.46957 * 109.36611 * 301.59492 * 25 24 22 27 27 C 1.46900 * 110.99933 * 183.18841 * 26 25 24 28 28 H 1.09007 * 109.46561 * 173.23130 * 1 2 3 29 29 H 1.09003 * 109.47257 * 293.22779 * 1 2 3 30 30 H 1.09001 * 109.47355 * 53.23313 * 1 2 3 31 31 H 0.97007 * 119.99611 * 274.99399 * 4 2 1 32 32 H 1.08998 * 109.47148 * 60.00092 * 8 5 4 33 33 H 1.09001 * 109.47161 * 300.00101 * 8 5 4 34 34 H 1.08998 * 109.47345 * 59.99862 * 9 8 5 35 35 H 1.09001 * 109.46924 * 299.99895 * 9 8 5 36 36 H 1.08998 * 109.47448 * 59.99471 * 10 9 8 37 37 H 1.09001 * 109.47179 * 299.99295 * 10 9 8 38 38 H 0.97006 * 120.00386 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.49351 * 298.33439 * 21 19 2 40 40 H 1.09001 * 109.48987 * 58.39722 * 21 19 2 41 41 H 1.08993 * 109.46853 * 187.77670 * 23 22 21 42 42 H 1.09001 * 109.46698 * 307.77413 * 23 22 21 43 43 H 1.08998 * 109.47411 * 67.77148 * 23 22 21 44 44 H 1.09000 * 109.49411 * 299.34290 * 24 22 21 45 45 H 1.09003 * 109.50259 * 179.28934 * 24 22 21 46 46 H 1.09000 * 109.48734 * 181.62588 * 25 24 22 47 47 H 1.09001 * 109.50735 * 61.57583 * 25 24 22 48 48 H 1.09000 * 109.47378 * 296.87007 * 27 26 25 49 49 H 1.08998 * 109.47029 * 56.86725 * 27 26 25 50 50 H 1.08996 * 109.46931 * 176.87138 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 0.1772 -2.5505 6 8 1.2750 0.9965 -2.7846 7 8 2.8122 -0.8076 -3.4935 8 6 3.8312 1.1873 -2.0441 9 6 4.2933 2.0454 -3.2236 10 6 5.4905 2.8969 -2.7967 11 6 5.9460 3.7416 -3.9587 12 1 5.4331 3.6772 -4.9070 13 6 7.0175 4.5967 -3.8112 14 7 7.6423 4.6747 -2.6567 15 14 7.5816 5.6441 -5.2512 16 1 6.8613 6.9426 -5.2312 17 1 9.0427 5.8870 -5.1443 18 1 7.2894 4.9356 -6.5232 19 6 2.0400 -0.7211 1.2493 20 1 1.5988 -0.2674 2.1367 21 6 1.6469 -2.1987 1.1822 22 7 2.1721 -2.8968 2.3639 23 6 1.7515 -4.3043 2.3741 24 6 3.6359 -2.7842 2.4317 25 6 4.0285 -1.3064 2.4991 26 7 3.5037 -0.6084 1.3171 27 6 3.9244 0.7990 1.3070 28 1 -0.3633 -1.0206 -0.1211 29 1 -0.3634 0.4053 0.9444 30 1 -0.3634 0.6151 -0.8232 31 1 2.1111 -1.6562 -1.1948 32 1 4.6458 0.5364 -1.7268 33 1 3.5398 1.8344 -1.2167 34 1 3.4785 2.6963 -3.5406 35 1 4.5845 1.3986 -4.0512 36 1 6.3051 2.2457 -2.4800 37 1 5.1996 3.5437 -1.9690 38 1 8.3964 5.2760 -2.5529 39 1 0.5606 -2.2855 1.1612 40 1 2.0652 -2.6457 0.2804 41 1 2.0349 -4.7613 3.3221 42 1 0.6698 -4.3611 2.2524 43 1 2.2376 -4.8348 1.5553 44 1 4.0771 -3.2376 1.5441 45 1 3.9996 -3.2981 3.3216 46 1 5.1148 -1.2194 2.5204 47 1 3.6102 -0.8594 3.4010 48 1 3.5038 1.3103 2.1729 49 1 5.0124 0.8533 1.3461 50 1 3.5693 1.2778 0.3945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339857953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:22 Heat of formation + Delta-G solvation = -92.950795 kcal Electronic energy + Delta-G solvation = -28684.112115 eV Core-core repulsion = 24872.216257 eV Total energy + Delta-G solvation = -3811.895859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87280 -38.21125 -37.39537 -37.01016 -36.49012 -35.97099 -34.16558 -31.98665 -30.50713 -29.75971 -29.51389 -26.32528 -25.68521 -25.40277 -23.85324 -22.43887 -22.19376 -20.84928 -20.06670 -18.81767 -18.54763 -17.53552 -17.16002 -16.86117 -16.64936 -16.47849 -16.30317 -15.92739 -15.68664 -15.57329 -15.24457 -14.82207 -14.49044 -14.33022 -14.12969 -13.92365 -13.65535 -13.43201 -13.32622 -13.18436 -13.14346 -13.05269 -12.95920 -12.81994 -12.75809 -12.64625 -12.53836 -12.49713 -12.30577 -12.17374 -12.05723 -11.75636 -11.70754 -11.35460 -11.30021 -11.09773 -10.56271 -10.36347 -9.38889 -9.22603 -8.21718 -6.32220 -0.69950 1.40295 1.40757 1.52104 1.79430 2.40230 2.75533 2.85798 2.94705 3.11848 3.23225 3.60512 3.73973 3.85054 3.86669 4.02264 4.15211 4.26678 4.30265 4.35151 4.35436 4.40886 4.47365 4.54259 4.59489 4.67045 4.67399 4.72620 4.79737 4.88558 4.93125 4.95529 4.99071 5.04718 5.07193 5.07900 5.14887 5.26592 5.40695 5.46918 5.65421 5.80866 5.93000 5.97505 6.11817 6.15515 6.18621 6.21339 6.83145 7.36816 8.89568 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.003085 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.406350 B = 9074.049832 C =10072.059026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.150 3.850 3 H 0.088 0.912 4 N -1.093 6.093 5 S 2.626 3.374 6 O -0.984 6.984 7 O -0.996 6.996 8 C -0.608 4.608 9 C -0.104 4.104 10 C 0.036 3.964 11 C -0.552 4.552 12 H 0.058 0.942 13 C 0.004 3.996 14 N -0.928 5.928 15 Si 0.960 3.040 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.087 3.913 20 H 0.069 0.931 21 C 0.059 3.941 22 N -0.552 5.552 23 C 0.025 3.975 24 C 0.057 3.943 25 C 0.058 3.942 26 N -0.545 5.545 27 C 0.008 3.992 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.422 0.578 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.002 0.998 37 H 0.005 0.995 38 H 0.264 0.736 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.025 0.975 44 H 0.035 0.965 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.043 0.957 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 -16.257 14.810 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.042 3.958 3 H 0.106 0.894 4 N -0.855 5.855 5 S 2.721 3.279 6 O -0.974 6.974 7 O -0.987 6.987 8 C -0.739 4.739 9 C -0.143 4.143 10 C -0.003 4.003 11 C -0.590 4.590 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.024 4.024 20 H 0.087 0.913 21 C -0.069 4.069 22 N -0.276 5.276 23 C -0.123 4.123 24 C -0.071 4.071 25 C -0.070 4.070 26 N -0.270 5.270 27 C -0.140 4.140 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.260 0.740 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.020 0.980 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.713 -16.069 14.072 25.383 hybrid contribution 1.289 0.544 -0.175 1.410 sum -12.424 -15.525 13.896 24.259 Atomic orbital electron populations 1.22336 0.93383 1.03681 1.03507 1.21037 0.95301 0.95813 0.83644 0.89419 1.55327 1.81635 1.19442 1.29047 1.04313 0.75900 0.74324 0.73387 1.93539 1.48033 1.71378 1.84477 1.93523 1.84945 1.59032 1.61156 1.30621 1.20075 1.14047 1.09125 1.21297 1.00187 0.97838 0.94996 1.18911 0.92095 0.93630 0.95621 1.21743 1.15010 1.23569 0.98710 0.92331 1.25894 0.96512 0.98343 0.98645 1.70064 1.22279 1.38841 1.25601 0.85516 0.77463 0.79023 0.79497 1.19681 1.20565 1.19043 1.21934 0.87757 0.96228 0.96440 0.91324 1.22258 1.00788 0.92464 0.91403 1.62188 1.10779 1.14584 1.40055 1.22394 1.01483 0.86961 1.01473 1.22198 0.87483 0.96017 1.01439 1.22185 1.00263 0.93672 0.90909 1.62117 1.10176 1.13785 1.40919 1.22649 1.01815 0.88131 1.01387 0.90720 0.89618 0.92288 0.74049 0.83831 0.84011 0.91537 0.91931 0.98002 0.97704 0.92673 0.88544 0.94194 0.90509 0.90542 0.95649 0.94697 0.89064 0.89758 0.93916 0.94296 0.91142 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.11 71.98 0.66 -2.01 16 2 C 0.15 2.67 2.12 44.99 0.10 2.76 16 3 H 0.09 1.59 5.28 -2.38 -0.01 1.58 16 4 N -1.09 -22.82 5.25 -169.38 -0.89 -23.71 16 5 S 2.63 76.81 5.38 -56.49 -0.30 76.51 16 6 O -0.98 -33.49 17.25 -127.65 -2.20 -35.69 16 7 O -1.00 -35.58 18.08 -127.65 -2.31 -37.89 16 8 C -0.61 -18.67 5.28 71.98 0.38 -18.29 16 9 C -0.10 -4.25 5.16 30.59 0.16 -4.10 16 10 C 0.04 1.83 4.97 29.85 0.15 1.98 16 11 C -0.55 -31.44 9.11 25.60 0.23 -31.20 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.00 0.25 5.46 84.66 0.46 0.71 16 14 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 15 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C 0.09 1.38 1.80 44.92 0.08 1.46 16 20 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 21 C 0.06 0.86 4.39 86.31 0.38 1.24 16 22 N -0.55 -7.93 4.97 -921.92 -4.58 -12.51 16 23 C 0.02 0.27 9.63 127.69 1.23 1.50 16 24 C 0.06 0.83 5.62 86.31 0.48 1.32 16 25 C 0.06 0.92 5.62 86.31 0.49 1.41 16 26 N -0.54 -9.87 4.72 -896.56 -4.23 -14.09 16 27 C 0.01 0.15 9.16 127.69 1.17 1.32 16 28 H 0.07 0.99 6.96 -2.38 -0.02 0.97 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.18 7.57 -2.39 -0.02 1.17 16 31 H 0.42 7.73 6.67 -96.74 -0.65 7.09 16 32 H 0.14 4.10 8.14 -2.39 -0.02 4.08 16 33 H 0.14 3.81 5.50 -2.39 -0.01 3.79 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 39 H 0.10 1.16 6.77 -2.39 -0.02 1.14 16 40 H 0.04 0.63 6.26 -2.39 -0.01 0.61 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.72 8.07 -2.39 -0.02 0.70 16 43 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.07 1.40 3.11 -2.39 -0.01 1.39 16 Total: -1.00 -72.56 391.56 -5.96 -78.52 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.27 Total: 19.57 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 5.96 Total: -41.90 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -9.41 Total: -105.39 kcal Atomic # 8 Polarization: -69.07 SS G_CDS: -4.51 Total: -73.58 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 76.81 SS G_CDS: -0.30 Total: 76.51 kcal Total: -72.56 -5.96 -78.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339857953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.426 kcal (2) G-P(sol) polarization free energy of solvation -72.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds