Wall clock time and date at job start Tue Mar 31 2020 17:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46494 * 109.47108 * 2 1 4 4 C 1.46505 * 120.00012 * 274.99956 * 3 2 1 5 5 C 1.50702 * 109.47303 * 275.00240 * 4 3 2 6 6 H 1.07999 * 119.99602 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99936 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00059 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99961 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46963 * 90.00507 * 9 7 5 11 11 H 1.48499 * 109.47032 * 210.00417 * 9 7 5 12 12 H 1.48496 * 109.47212 * 330.00406 * 9 7 5 13 13 S 1.65598 * 120.00264 * 95.00454 * 3 2 1 14 14 O 1.42099 * 106.40629 * 156.45731 * 13 3 2 15 15 O 1.42100 * 106.40142 * 23.53692 * 13 3 2 16 16 N 1.65606 * 107.21571 * 270.00096 * 13 3 2 17 17 C 1.47019 * 125.64387 * 269.95299 * 16 13 3 18 18 C 1.54329 * 107.27012 * 181.09824 * 17 16 13 19 19 C 1.55163 * 102.94120 * 22.19085 * 18 17 16 20 20 H 1.08995 * 111.03169 * 82.59061 * 19 18 17 21 21 C 1.53001 * 111.00183 * 206.42769 * 19 18 17 22 22 C 1.53000 * 109.46886 * 287.19463 * 21 19 18 23 23 N 1.46901 * 109.46769 * 180.02562 * 22 21 19 24 24 C 1.46906 * 110.99853 * 170.00087 * 23 22 21 25 25 C 1.46893 * 111.00243 * 293.95721 * 23 22 21 26 26 C 1.47423 * 125.64904 * 89.99950 * 16 13 3 27 27 H 1.09005 * 109.47420 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46932 * 299.99841 * 1 2 3 29 29 H 1.09005 * 109.47331 * 59.99902 * 1 2 3 30 30 H 1.09001 * 109.46932 * 240.00159 * 2 1 3 31 31 H 1.08998 * 109.47157 * 120.00405 * 2 1 3 32 32 H 1.09002 * 109.46911 * 35.00208 * 4 3 2 33 33 H 1.09001 * 109.46846 * 155.00517 * 4 3 2 34 34 H 0.96997 * 120.00146 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.88824 * 300.51135 * 17 16 13 36 36 H 1.08996 * 109.88297 * 61.68285 * 17 16 13 37 37 H 1.09003 * 110.71709 * 263.83315 * 18 17 16 38 38 H 1.08986 * 110.72277 * 140.55837 * 18 17 16 39 39 H 1.09001 * 109.46652 * 167.19808 * 21 19 18 40 40 H 1.08992 * 109.47514 * 47.19898 * 21 19 18 41 41 H 1.09002 * 109.47398 * 300.00496 * 22 21 19 42 42 H 1.09001 * 109.47194 * 60.00677 * 22 21 19 43 43 H 1.08997 * 109.47228 * 60.00039 * 24 23 22 44 44 H 1.09002 * 109.47085 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47139 * 300.00177 * 24 23 22 46 46 H 1.08999 * 109.47439 * 60.00146 * 25 23 22 47 47 H 1.08997 * 109.47257 * 180.02562 * 25 23 22 48 48 H 1.09006 * 109.46808 * 299.99830 * 25 23 22 49 49 H 1.08996 * 110.36688 * 36.99497 * 26 16 13 50 50 H 1.09001 * 110.45796 * 274.71824 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1722 1.1116 -1.3836 7 6 3.8528 2.3614 -3.0845 8 7 5.0189 2.0818 -3.6244 9 14 2.6810 3.5331 -3.9467 10 1 2.9448 4.9215 -3.4908 11 1 2.8861 3.4469 -5.4150 12 1 1.2807 3.1624 -3.6200 13 16 2.4122 2.1202 1.4286 14 8 3.3284 3.1570 1.1049 15 8 2.7096 1.0799 2.3498 16 7 1.0431 2.8641 1.9895 17 6 0.6310 4.2422 1.6853 18 6 -0.6859 4.5051 2.4457 19 6 -0.6456 3.4522 3.5847 20 1 -0.0443 3.8050 4.4225 21 6 -2.0586 3.0861 4.0433 22 6 -2.6516 4.2471 4.8442 23 7 -4.0081 3.8954 5.2850 24 6 -4.5194 4.8780 6.2500 25 6 -4.9163 3.7618 4.1382 26 6 0.0362 2.2546 2.8772 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3616 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 5.2707 2.4843 -4.4703 35 1 1.3979 4.9409 2.0197 36 1 0.4683 4.3524 0.6132 37 1 -1.5458 4.3384 1.7968 38 1 -0.7001 5.5152 2.8546 39 1 -2.0177 2.1956 4.6705 40 1 -2.6836 2.8887 3.1725 41 1 -2.0266 4.4445 5.7151 42 1 -2.6926 5.1377 4.2170 43 1 -4.5476 5.8633 5.7848 44 1 -5.5248 4.5933 6.5602 45 1 -3.8650 4.9061 7.1212 46 1 -4.5506 2.9786 3.4743 47 1 -5.9136 3.5016 4.4929 48 1 -4.9589 4.7068 3.5966 49 1 0.5183 1.6062 3.6088 50 1 -0.6939 1.6919 2.2954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364928270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:17 Heat of formation + Delta-G solvation = -70.615375 kcal Electronic energy + Delta-G solvation = -28481.681788 eV Core-core repulsion = 24670.754466 eV Total energy + Delta-G solvation = -3810.927322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.11011 -37.56227 -36.70544 -36.16065 -35.20704 -33.09332 -32.58887 -30.30941 -29.66386 -28.35064 -27.94063 -27.13179 -24.42461 -22.91945 -22.34814 -21.52543 -21.46513 -20.32869 -18.46411 -17.50528 -16.98524 -16.63687 -16.28479 -15.79787 -15.69261 -15.49919 -14.85650 -14.41806 -14.18071 -14.05777 -13.63941 -13.51079 -13.39608 -13.30657 -12.78449 -12.74282 -12.50192 -12.38575 -12.37252 -12.16226 -12.00936 -12.00509 -11.97351 -11.51559 -11.42550 -11.33188 -11.25331 -11.11943 -10.99139 -10.87071 -10.77529 -10.65822 -10.48095 -10.37104 -10.17924 -9.54936 -8.85995 -8.73809 -8.58896 -8.12668 -6.07831 -4.06877 1.08957 3.26193 3.31279 3.32739 3.42952 3.56973 4.04021 4.29206 4.38071 4.48372 4.54919 4.77967 4.84628 4.89865 5.00312 5.03212 5.17114 5.21070 5.21830 5.26014 5.28301 5.33269 5.37582 5.44662 5.48211 5.54261 5.58221 5.60596 5.66866 5.68993 5.74763 5.77920 5.92652 5.95189 6.00559 6.14793 6.22418 6.28409 6.43331 6.51752 6.58548 6.63838 6.65628 6.76288 7.11129 7.43012 7.58818 8.49669 8.97236 9.51229 11.05808 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.003111 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.350930 B = 8999.500686 C = 9385.316346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.985 5.985 4 C 0.229 3.771 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.792 3.208 14 O -0.958 6.958 15 O -0.989 6.989 16 N -1.023 6.023 17 C 0.120 3.880 18 C -0.123 4.123 19 C -0.097 4.097 20 H 0.086 0.914 21 C -0.106 4.106 22 C 0.055 3.945 23 N -0.549 5.549 24 C 0.024 3.976 25 C 0.020 3.980 26 C 0.122 3.878 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.024 0.976 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.025 0.975 49 H 0.080 0.920 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.739 3.927 15.757 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 N -0.825 5.825 4 C 0.106 3.894 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.802 3.198 14 O -0.942 6.942 15 O -0.973 6.973 16 N -0.862 5.862 17 C -0.005 4.005 18 C -0.161 4.161 19 C -0.118 4.118 20 H 0.104 0.896 21 C -0.144 4.144 22 C -0.073 4.073 23 N -0.273 5.273 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.004 4.004 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.043 0.957 49 H 0.098 0.902 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.643 3.475 16.197 25.696 hybrid contribution -0.901 1.489 -1.313 2.180 sum -20.544 4.964 14.885 25.851 Atomic orbital electron populations 1.22304 0.97290 1.01574 1.01934 1.21171 0.92952 0.82938 1.03947 1.57586 1.81031 1.21473 1.22445 1.19394 0.98184 0.90818 0.81037 1.21374 1.00823 1.28855 1.05862 0.90441 1.24869 0.95068 0.96093 0.96948 1.69894 1.20560 1.43998 1.18886 0.86924 0.81812 0.82222 0.79178 1.19823 1.20982 1.18998 1.01666 0.72499 0.72983 0.72641 1.93628 1.58672 1.57832 1.84020 1.93522 1.82956 1.57546 1.63287 1.59406 1.41763 1.22613 1.62403 1.21646 0.96393 0.82742 0.99755 1.22717 0.97285 0.99268 0.96876 1.22369 0.96084 0.95562 0.97784 0.89613 1.21539 0.94281 0.98635 0.99952 1.22176 0.89298 0.96859 0.98994 1.61989 1.02653 1.47780 1.14877 1.22378 1.00901 0.93124 0.96026 1.22447 0.96799 1.00606 0.92927 1.22016 0.90618 0.95423 0.92330 0.92026 0.93177 0.92220 0.89447 0.90323 0.94966 0.95577 0.92541 0.91224 0.91665 0.90758 0.90514 0.90584 0.91439 0.90721 0.94552 0.95729 0.91435 0.91341 0.90880 0.91565 0.95667 0.90183 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.15 0.38 -1.93 16 2 C 0.12 2.00 6.40 -4.05 -0.03 1.97 16 3 N -0.98 -20.11 2.82 -115.67 -0.33 -20.43 16 4 C 0.23 5.39 4.17 -5.19 -0.02 5.37 16 5 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 9 Si 0.87 21.07 27.47 -169.99 -4.67 16.40 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 13 S 2.79 56.09 6.31 -107.50 -0.68 55.41 16 14 O -0.96 -23.12 16.69 -57.17 -0.95 -24.07 16 15 O -0.99 -20.86 16.01 -57.17 -0.92 -21.77 16 16 N -1.02 -15.34 3.76 -111.42 -0.42 -15.76 16 17 C 0.12 1.56 6.99 -3.06 -0.02 1.54 16 18 C -0.12 -1.12 5.90 -24.89 -0.15 -1.27 16 19 C -0.10 -0.88 3.01 -88.47 -0.27 -1.14 16 20 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.11 -0.80 4.64 -26.73 -0.12 -0.92 16 22 C 0.05 0.40 4.86 -3.82 -0.02 0.38 16 23 N -0.55 -4.19 5.02 -251.26 -1.26 -5.45 16 24 C 0.02 0.15 9.57 60.07 0.57 0.72 16 25 C 0.02 0.14 9.32 60.06 0.56 0.70 16 26 C 0.12 1.42 6.40 -2.53 -0.02 1.40 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.61 6.00 -51.93 -0.31 0.30 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 31 H 0.08 1.31 6.91 -51.93 -0.36 0.95 16 32 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 33 H 0.03 0.62 7.04 -51.93 -0.37 0.25 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 38 H 0.08 0.59 8.14 -51.94 -0.42 0.17 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.50 6.38 -51.93 -0.33 0.17 16 41 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 42 H 0.04 0.26 7.73 -51.93 -0.40 -0.14 16 43 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 45 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 46 H 0.07 0.48 6.47 -51.93 -0.34 0.14 16 47 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 48 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.08 0.96 7.78 -51.93 -0.40 0.55 16 50 H 0.07 0.69 6.12 -51.93 -0.32 0.37 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -34.78 399.39 -11.11 -45.89 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -9.11 Total: -2.72 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 0.43 Total: -6.66 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.23 Total: -68.49 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -1.87 Total: -45.85 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: 56.09 SS G_CDS: -0.68 Total: 55.41 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.78 -11.11 -45.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364928270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.728 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds