Wall clock time and date at job start Tue Mar 31 2020 17:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46494 * 109.47108 * 2 1 4 4 C 1.46505 * 120.00012 * 274.99956 * 3 2 1 5 5 C 1.50702 * 109.47303 * 275.00240 * 4 3 2 6 6 H 1.07999 * 119.99602 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99936 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00059 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99961 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46963 * 90.00507 * 9 7 5 11 11 H 1.48499 * 109.47032 * 210.00417 * 9 7 5 12 12 H 1.48496 * 109.47212 * 330.00406 * 9 7 5 13 13 S 1.65598 * 120.00264 * 95.00454 * 3 2 1 14 14 O 1.42099 * 106.40629 * 156.45731 * 13 3 2 15 15 O 1.42100 * 106.40142 * 23.53692 * 13 3 2 16 16 N 1.65606 * 107.21571 * 270.00096 * 13 3 2 17 17 C 1.47019 * 125.64387 * 269.95299 * 16 13 3 18 18 C 1.54329 * 107.27012 * 181.09824 * 17 16 13 19 19 C 1.55163 * 102.94120 * 22.19085 * 18 17 16 20 20 H 1.08995 * 111.03169 * 82.59061 * 19 18 17 21 21 C 1.53001 * 111.00183 * 206.42769 * 19 18 17 22 22 C 1.53000 * 109.46886 * 287.19463 * 21 19 18 23 23 N 1.46901 * 109.46769 * 180.02562 * 22 21 19 24 24 C 1.46906 * 110.99853 * 170.00087 * 23 22 21 25 25 C 1.46893 * 111.00243 * 293.95721 * 23 22 21 26 26 C 1.47423 * 125.64904 * 89.99950 * 16 13 3 27 27 H 1.09005 * 109.47420 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46932 * 299.99841 * 1 2 3 29 29 H 1.09005 * 109.47331 * 59.99902 * 1 2 3 30 30 H 1.09001 * 109.46932 * 240.00159 * 2 1 3 31 31 H 1.08998 * 109.47157 * 120.00405 * 2 1 3 32 32 H 1.09002 * 109.46911 * 35.00208 * 4 3 2 33 33 H 1.09001 * 109.46846 * 155.00517 * 4 3 2 34 34 H 0.96997 * 120.00146 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.88824 * 300.51135 * 17 16 13 36 36 H 1.08996 * 109.88297 * 61.68285 * 17 16 13 37 37 H 1.09003 * 110.71709 * 263.83315 * 18 17 16 38 38 H 1.08986 * 110.72277 * 140.55837 * 18 17 16 39 39 H 1.09001 * 109.46652 * 167.19808 * 21 19 18 40 40 H 1.08992 * 109.47514 * 47.19898 * 21 19 18 41 41 H 1.09002 * 109.47398 * 300.00496 * 22 21 19 42 42 H 1.09001 * 109.47194 * 60.00677 * 22 21 19 43 43 H 1.08997 * 109.47228 * 60.00039 * 24 23 22 44 44 H 1.09002 * 109.47085 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47139 * 300.00177 * 24 23 22 46 46 H 1.08999 * 109.47439 * 60.00146 * 25 23 22 47 47 H 1.08997 * 109.47257 * 180.02562 * 25 23 22 48 48 H 1.09006 * 109.46808 * 299.99830 * 25 23 22 49 49 H 1.08996 * 110.36688 * 36.99497 * 26 16 13 50 50 H 1.09001 * 110.45796 * 274.71824 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1722 1.1116 -1.3836 7 6 3.8528 2.3614 -3.0845 8 7 5.0189 2.0818 -3.6244 9 14 2.6810 3.5331 -3.9467 10 1 2.9448 4.9215 -3.4908 11 1 2.8861 3.4469 -5.4150 12 1 1.2807 3.1624 -3.6200 13 16 2.4122 2.1202 1.4286 14 8 3.3284 3.1570 1.1049 15 8 2.7096 1.0799 2.3498 16 7 1.0431 2.8641 1.9895 17 6 0.6310 4.2422 1.6853 18 6 -0.6859 4.5051 2.4457 19 6 -0.6456 3.4522 3.5847 20 1 -0.0443 3.8050 4.4225 21 6 -2.0586 3.0861 4.0433 22 6 -2.6516 4.2471 4.8442 23 7 -4.0081 3.8954 5.2850 24 6 -4.5194 4.8780 6.2500 25 6 -4.9163 3.7618 4.1382 26 6 0.0362 2.2546 2.8772 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3616 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 5.2707 2.4843 -4.4703 35 1 1.3979 4.9409 2.0197 36 1 0.4683 4.3524 0.6132 37 1 -1.5458 4.3384 1.7968 38 1 -0.7001 5.5152 2.8546 39 1 -2.0177 2.1956 4.6705 40 1 -2.6836 2.8887 3.1725 41 1 -2.0266 4.4445 5.7151 42 1 -2.6926 5.1377 4.2170 43 1 -4.5476 5.8633 5.7848 44 1 -5.5248 4.5933 6.5602 45 1 -3.8650 4.9061 7.1212 46 1 -4.5506 2.9786 3.4743 47 1 -5.9136 3.5016 4.4929 48 1 -4.9589 4.7068 3.5966 49 1 0.5183 1.6062 3.6088 50 1 -0.6939 1.6919 2.2954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364928270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:17 Heat of formation + Delta-G solvation = -97.041933 kcal Electronic energy + Delta-G solvation = -28482.827729 eV Core-core repulsion = 24670.754466 eV Total energy + Delta-G solvation = -3812.073264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.92746 -38.39729 -38.18883 -37.77419 -36.92600 -34.69856 -33.89680 -31.86529 -30.57347 -29.14387 -28.92477 -28.40435 -25.07138 -24.62731 -23.46906 -22.97804 -22.10764 -21.03787 -19.86145 -19.21545 -18.78901 -18.28914 -17.40307 -16.93557 -16.39124 -16.26439 -16.22205 -15.68957 -15.39329 -15.02843 -14.76643 -14.67801 -14.61128 -14.42695 -14.21958 -14.08816 -13.70943 -13.52493 -13.39248 -13.24361 -13.14090 -13.09330 -12.94992 -12.82955 -12.76821 -12.59785 -12.50674 -12.43571 -12.19759 -12.07720 -11.92657 -11.73295 -11.69733 -11.60882 -11.47240 -11.30408 -10.79599 -10.01466 -9.80652 -9.23814 -8.30018 -6.36042 -0.46383 1.35002 1.39559 1.47921 1.99062 2.34354 2.53483 3.02505 3.04247 3.22953 3.56956 3.78682 3.88096 3.93917 4.21452 4.31446 4.33111 4.37683 4.41317 4.43873 4.51803 4.53637 4.59666 4.66550 4.68596 4.75657 4.78728 4.81163 4.85993 4.89095 4.94914 5.00375 5.01492 5.05716 5.06136 5.09493 5.14593 5.23806 5.36865 5.39404 5.40610 5.47134 5.47884 5.53762 5.83182 6.15909 6.16416 6.29802 6.66532 7.26787 8.87709 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.003111 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.350930 B = 8999.500686 C = 9385.316346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.107 3.893 3 N -0.993 5.993 4 C 0.239 3.761 5 C -0.543 4.543 6 H 0.025 0.975 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.228 1.228 13 S 2.803 3.197 14 O -1.008 7.008 15 O -1.007 7.007 16 N -1.017 6.017 17 C 0.107 3.893 18 C -0.110 4.110 19 C -0.087 4.087 20 H 0.087 0.913 21 C -0.096 4.096 22 C 0.056 3.944 23 N -0.564 5.564 24 C 0.023 3.977 25 C 0.020 3.980 26 C 0.112 3.888 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.268 0.732 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.026 0.974 49 H 0.073 0.927 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.893 5.070 16.233 30.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.833 5.833 4 C 0.115 3.885 5 C -0.582 4.582 6 H 0.043 0.957 7 C -0.192 4.192 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.150 1.150 13 S 2.814 3.186 14 O -0.992 6.992 15 O -0.991 6.991 16 N -0.859 5.859 17 C -0.018 4.018 18 C -0.149 4.149 19 C -0.108 4.108 20 H 0.105 0.895 21 C -0.134 4.134 22 C -0.072 4.072 23 N -0.288 5.288 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.013 4.013 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.044 0.956 49 H 0.092 0.908 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.812 4.580 16.700 29.443 hybrid contribution 0.456 1.052 -1.338 1.762 sum -23.356 5.632 15.362 28.517 Atomic orbital electron populations 1.22218 0.93615 1.03577 1.02607 1.21395 0.95981 0.81208 1.03245 1.57544 1.81615 1.22747 1.21412 1.19141 0.95691 0.91352 0.82352 1.21692 1.02505 1.27878 1.06118 0.95676 1.25967 0.97151 0.98223 0.97865 1.70075 1.23222 1.45897 1.19708 0.85762 0.80858 0.79062 0.77645 1.19366 1.20408 1.15034 1.00959 0.73002 0.72221 0.72430 1.93556 1.61568 1.59312 1.84742 1.93484 1.83858 1.58222 1.63581 1.58936 1.41159 1.23511 1.62297 1.21939 0.98270 0.81114 1.00434 1.22713 0.95338 1.00313 0.96489 1.22315 0.96764 0.94168 0.97549 0.89496 1.21440 0.93129 0.98663 1.00192 1.22140 0.89293 0.96711 0.99020 1.61995 1.02958 1.48390 1.15442 1.22402 1.01239 0.92966 0.95855 1.22468 0.96914 1.00704 0.92722 1.22352 0.90123 0.96653 0.92132 0.89378 0.91755 0.92199 0.91006 0.90326 0.92707 0.95138 0.92342 0.92088 0.91825 0.89172 0.88515 0.90819 0.90736 0.90735 0.94189 0.95558 0.90891 0.91168 0.90720 0.91124 0.95550 0.90822 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.24 71.98 0.74 -3.14 16 2 C 0.11 3.63 6.40 86.38 0.55 4.18 16 3 N -0.99 -40.60 2.82 -519.86 -1.47 -42.07 16 4 C 0.24 11.15 4.17 85.63 0.36 11.51 16 5 C -0.54 -32.11 9.94 25.60 0.25 -31.85 16 6 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 7 C 0.01 0.33 5.47 84.66 0.46 0.79 16 8 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 9 Si 0.95 42.92 27.47 68.60 1.88 44.80 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 13 S 2.80 113.98 6.31 -56.49 -0.36 113.63 16 14 O -1.01 -50.31 16.69 -128.00 -2.14 -52.45 16 15 O -1.01 -43.24 16.01 -128.00 -2.05 -45.29 16 16 N -1.02 -29.14 3.76 -506.43 -1.90 -31.04 16 17 C 0.11 2.58 6.99 86.73 0.61 3.18 16 18 C -0.11 -1.62 5.90 31.79 0.19 -1.43 16 19 C -0.09 -1.30 3.01 -9.40 -0.03 -1.33 16 20 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 21 C -0.10 -1.13 4.64 30.59 0.14 -0.98 16 22 C 0.06 0.65 4.86 86.30 0.42 1.06 16 23 N -0.56 -7.08 5.02 -948.84 -4.76 -11.84 16 24 C 0.02 0.24 9.57 127.69 1.22 1.46 16 25 C 0.02 0.21 9.32 127.69 1.19 1.40 16 26 C 0.11 2.33 6.40 86.86 0.56 2.89 16 27 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.06 1.35 6.00 -2.39 -0.01 1.34 16 29 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 31 H 0.08 2.63 6.91 -2.39 -0.02 2.61 16 32 H 0.06 2.32 7.17 -2.39 -0.02 2.30 16 33 H 0.03 1.41 7.04 -2.39 -0.02 1.39 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.10 7.91 -2.39 -0.02 1.09 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.80 6.38 -2.39 -0.02 0.79 16 41 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 42 H 0.04 0.44 7.73 -2.39 -0.02 0.42 16 43 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 45 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 46 H 0.07 0.75 6.47 -2.39 -0.02 0.73 16 47 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 48 H 0.03 0.27 8.14 -2.38 -0.02 0.25 16 49 H 0.07 1.64 7.78 -2.39 -0.02 1.63 16 50 H 0.08 1.46 6.12 -2.39 -0.01 1.45 16 Total: -1.00 -79.35 399.39 -3.00 -82.35 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.83 Total: 14.63 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 6.66 Total: -12.25 kcal Atomic # 7 Polarization: -137.60 SS G_CDS: -7.83 Total: -145.43 kcal Atomic # 8 Polarization: -93.55 SS G_CDS: -4.19 Total: -97.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Atomic # 16 Polarization: 113.98 SS G_CDS: -0.36 Total: 113.63 kcal Total: -79.35 -3.00 -82.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364928270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.694 kcal (2) G-P(sol) polarization free energy of solvation -79.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds