Wall clock time and date at job start Tue Mar 31 2020 17:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46906 * 109.47072 * 2 1 4 4 C 1.48530 * 110.99918 * 52.60105 * 3 2 1 5 5 C 1.54940 * 103.22772 * 159.72252 * 4 3 2 6 6 H 1.09000 * 110.72311 * 80.94364 * 5 4 3 7 7 N 1.46501 * 110.87960 * 204.16148 * 5 4 3 8 8 S 1.65596 * 119.99780 * 258.59009 * 7 5 4 9 9 O 1.42097 * 106.40441 * 178.54113 * 8 7 5 10 10 O 1.42107 * 106.39966 * 311.45872 * 8 7 5 11 11 N 1.65599 * 107.21854 * 64.99581 * 8 7 5 12 12 C 1.46495 * 120.00320 * 269.99945 * 11 8 7 13 13 C 1.46506 * 119.99694 * 90.00547 * 11 8 7 14 14 H 1.08996 * 109.46776 * 359.97438 * 13 11 8 15 15 C 1.52995 * 109.47266 * 119.99642 * 13 11 8 16 16 C 1.50699 * 109.46538 * 239.99810 * 13 11 8 17 17 H 1.08004 * 120.00417 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99756 * 179.97438 * 16 13 11 19 19 N 1.31520 * 120.00303 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00235 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47219 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47508 * 120.00134 * 20 18 16 23 23 H 1.48497 * 109.47598 * 240.00160 * 20 18 16 24 24 C 1.54604 * 102.91923 * 322.58912 * 5 4 3 25 25 C 1.52998 * 110.30654 * 263.04030 * 24 5 4 26 26 C 1.52997 * 110.31002 * 140.87074 * 24 5 4 27 27 C 1.47899 * 110.99831 * 170.00251 * 3 2 1 28 28 H 1.08996 * 109.47340 * 60.00144 * 1 2 3 29 29 H 1.09002 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46936 * 299.99708 * 1 2 3 31 31 H 1.08993 * 109.47007 * 240.00050 * 2 1 3 32 32 H 1.08996 * 109.47340 * 119.99856 * 2 1 3 33 33 H 1.09002 * 110.67228 * 278.15582 * 4 3 2 34 34 H 1.09004 * 110.67104 * 41.28985 * 4 3 2 35 35 H 0.96996 * 119.99853 * 78.59197 * 7 5 4 36 36 H 1.08997 * 109.47181 * 90.00491 * 12 11 8 37 37 H 1.09005 * 109.47337 * 210.00167 * 12 11 8 38 38 H 1.09007 * 109.47133 * 329.99924 * 12 11 8 39 39 H 1.09003 * 109.47448 * 299.99785 * 15 13 11 40 40 H 1.09003 * 109.47050 * 60.00010 * 15 13 11 41 41 H 1.09002 * 109.47225 * 179.97438 * 15 13 11 42 42 H 0.96995 * 120.00150 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47006 * 177.16928 * 25 24 5 44 44 H 1.08996 * 109.46974 * 297.16843 * 25 24 5 45 45 H 1.08997 * 109.47514 * 57.17132 * 25 24 5 46 46 H 1.08997 * 109.47078 * 302.83281 * 26 24 5 47 47 H 1.09008 * 109.47129 * 62.82960 * 26 24 5 48 48 H 1.08996 * 109.47127 * 182.82602 * 26 24 5 49 49 H 1.08997 * 109.91760 * 333.50746 * 27 3 2 50 50 H 1.08995 * 109.91931 * 94.80655 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4031 2.1676 1.1016 5 6 2.3780 3.3586 1.2792 6 1 2.1857 4.1291 0.5326 7 7 2.2826 3.9143 2.6314 8 16 1.4247 5.3058 2.8961 9 8 1.4932 5.5600 4.2925 10 8 1.8581 6.2372 1.9143 11 7 -0.1624 4.9749 2.5583 12 6 -0.6792 5.1724 1.2018 13 6 -1.0497 4.4848 3.6160 14 1 -0.4917 4.4015 4.5486 15 6 -2.2110 5.4634 3.8017 16 6 -1.5897 3.1315 3.2316 17 1 -1.3012 2.6816 2.2930 18 6 -2.4521 2.4675 4.0780 19 7 -2.8038 3.0155 5.2207 20 14 -3.1221 0.7903 3.6012 21 1 -2.5779 0.3982 2.2763 22 1 -2.7165 -0.2124 4.6187 23 1 -4.6041 0.8512 3.5297 24 6 3.7623 2.7092 1.0511 25 6 4.4097 2.3543 2.3912 26 6 4.6671 3.6528 0.2563 27 6 3.4784 1.4315 0.2397 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 0.4125 2.5208 0.8150 34 1 1.3517 1.5732 2.0139 35 1 2.7219 3.4671 3.3716 36 1 -0.5553 4.2537 0.6284 37 1 -1.7371 5.4306 1.2500 38 1 -0.1298 5.9798 0.7176 39 1 -1.8203 6.4423 4.0798 40 1 -2.7689 5.5464 2.8690 41 1 -2.8713 5.0985 4.5884 42 1 -3.4108 2.5486 5.8160 43 1 5.3609 1.8526 2.2136 44 1 4.5809 3.2653 2.9645 45 1 3.7485 1.6921 2.9501 46 1 4.1873 3.9057 -0.6891 47 1 4.8382 4.5627 0.8318 48 1 5.6206 3.1624 0.0602 49 1 3.7895 0.5544 0.8071 50 1 4.0099 1.4697 -0.7111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364958523.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:52 Heat of formation + Delta-G solvation = -72.676538 kcal Electronic energy + Delta-G solvation = -30318.736474 eV Core-core repulsion = 26507.719773 eV Total energy + Delta-G solvation = -3811.016701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92618 -36.66614 -36.15065 -35.50489 -35.24146 -33.12956 -32.60620 -30.43629 -29.07287 -27.95473 -27.36202 -25.55095 -25.15479 -24.95676 -22.80707 -20.77228 -20.54329 -19.13074 -18.88458 -17.28924 -16.79871 -16.46156 -16.16584 -15.63161 -15.21287 -14.65075 -14.54324 -14.37706 -14.06036 -13.58021 -13.46010 -13.27052 -13.02117 -12.82908 -12.67219 -12.46435 -12.14020 -11.96854 -11.88772 -11.78159 -11.67429 -11.50006 -11.46082 -11.37230 -11.26768 -11.15544 -11.04109 -11.01414 -10.87226 -10.79633 -10.65530 -10.49470 -10.40012 -10.25998 -10.04290 -9.26480 -9.08335 -8.50413 -8.36191 -7.95006 -6.10995 -4.18817 1.27075 3.20247 3.29159 3.30202 3.45033 4.04558 4.18187 4.32871 4.45138 4.61415 4.77387 5.00790 5.15325 5.19866 5.21502 5.28789 5.31925 5.36203 5.49656 5.57773 5.59547 5.64729 5.69601 5.78595 5.84631 5.87722 5.90823 6.00130 6.08476 6.10988 6.15601 6.22031 6.28895 6.34650 6.41441 6.48014 6.66145 6.84241 6.86960 6.93701 7.09249 7.10438 7.24966 7.53245 7.64019 7.77981 8.03937 8.25553 8.84665 9.47345 10.94148 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.006571 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.575275 B = 4259.838596 C = 6093.281222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.047 3.953 3 N -0.516 5.516 4 C 0.021 3.979 5 C 0.161 3.839 6 H 0.103 0.897 7 N -1.119 6.119 8 S 2.780 3.220 9 O -0.983 6.983 10 O -0.998 6.998 11 N -0.988 5.988 12 C 0.097 3.903 13 C 0.269 3.731 14 H 0.058 0.942 15 C -0.146 4.146 16 C -0.519 4.519 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.890 3.110 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.284 1.284 24 C -0.080 4.080 25 C -0.143 4.143 26 C -0.136 4.136 27 C 0.045 3.955 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.412 0.588 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.012 0.988 40 H 0.033 0.967 41 H 0.092 0.908 42 H 0.262 0.738 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.904 -3.656 -9.545 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.082 4.082 3 N -0.241 5.241 4 C -0.109 4.109 5 C 0.052 3.948 6 H 0.121 0.879 7 N -0.878 5.878 8 S 2.789 3.211 9 O -0.967 6.967 10 O -0.982 6.982 11 N -0.831 5.831 12 C -0.049 4.049 13 C 0.166 3.834 14 H 0.075 0.925 15 C -0.205 4.205 16 C -0.559 4.559 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.195 1.195 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.082 4.082 25 C -0.201 4.201 26 C -0.193 4.193 27 C -0.083 4.083 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.927 -2.536 -9.749 14.862 hybrid contribution -0.354 -2.089 0.840 2.280 sum 10.573 -4.625 -8.909 14.579 Atomic orbital electron populations 1.21901 0.94448 1.01770 1.03439 1.22229 0.96398 0.89203 1.00323 1.64820 1.03918 1.11920 1.43425 1.23817 0.99275 0.94508 0.93258 1.21607 0.94010 0.95868 0.83322 0.87899 1.56172 1.69440 1.47406 1.14741 1.01829 0.73021 0.73365 0.72858 1.93594 1.86808 1.84143 1.32158 1.93532 1.81535 1.60378 1.62722 1.57637 1.26532 1.81488 1.17441 1.21314 1.01353 0.99754 0.82514 1.18709 0.87624 0.92431 0.84649 0.92478 1.22064 1.00546 0.96200 1.01728 1.21415 1.27567 1.01808 1.05083 0.91751 1.24913 0.96218 0.97799 0.94915 1.69888 1.34717 1.37962 1.10005 0.86573 0.78871 0.84160 0.78553 1.19511 1.21197 1.21061 1.21616 0.95367 0.95319 0.95890 1.21877 1.00283 1.01763 0.96163 1.21854 0.98596 0.98892 1.00005 1.23016 0.89788 0.96192 0.99330 0.91834 0.92601 0.91453 0.91023 0.94937 0.88443 0.92324 0.75238 0.93740 0.90629 0.92085 0.96895 0.94805 0.88927 0.92772 0.92298 0.91710 0.92288 0.91941 0.92153 0.92643 0.93592 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.57 37.16 0.36 -1.72 16 2 C 0.05 0.56 5.75 -3.82 -0.02 0.54 16 3 N -0.52 -6.61 5.40 -230.45 -1.24 -7.85 16 4 C 0.02 0.30 4.79 -1.90 -0.01 0.29 16 5 C 0.16 2.25 3.16 -66.06 -0.21 2.05 16 6 H 0.10 1.50 7.30 -51.93 -0.38 1.12 16 7 N -1.12 -17.37 5.25 -3.30 -0.02 -17.39 16 8 S 2.78 53.27 6.12 -107.50 -0.66 52.61 16 9 O -0.98 -22.13 16.70 -57.17 -0.95 -23.08 16 10 O -1.00 -19.96 16.13 -57.17 -0.92 -20.88 16 11 N -0.99 -19.70 3.12 -115.85 -0.36 -20.06 16 12 C 0.10 1.67 9.90 59.84 0.59 2.27 16 13 C 0.27 6.34 2.62 -69.08 -0.18 6.16 16 14 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 15 C -0.15 -3.40 8.95 37.15 0.33 -3.07 16 16 C -0.52 -12.69 8.37 -34.44 -0.29 -12.98 16 17 H 0.06 1.51 7.15 -52.48 -0.38 1.14 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -23.95 11.32 55.43 0.63 -23.33 16 20 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.08 -0.91 0.95 -153.15 -0.15 -1.06 16 25 C -0.14 -1.51 7.02 37.16 0.26 -1.25 16 26 C -0.14 -1.42 8.22 37.16 0.31 -1.12 16 27 C 0.05 0.50 6.03 -2.75 -0.02 0.48 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.05 6.79 -51.93 -0.35 0.70 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.39 7.81 -51.93 -0.41 -0.01 16 33 H 0.10 1.57 5.64 -51.93 -0.29 1.27 16 34 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 35 H 0.41 5.87 6.43 -34.47 -0.22 5.64 16 36 H 0.04 0.71 6.61 -51.93 -0.34 0.37 16 37 H 0.08 1.31 6.43 -51.93 -0.33 0.97 16 38 H 0.06 0.97 7.02 -51.93 -0.36 0.61 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 41 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 42 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.69 7.16 -51.93 -0.37 0.32 16 45 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 46 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 47 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.05 0.49 7.11 -51.93 -0.37 0.12 16 50 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -29.36 387.60 -10.40 -39.76 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.57 Total: 7.39 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 0.88 Total: -7.86 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -0.99 Total: -68.63 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.88 Total: -43.96 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 53.27 SS G_CDS: -0.66 Total: 52.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.36 -10.40 -39.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364958523.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.919 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds