Wall clock time and date at job start Tue Mar 31 2020 17:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46906 * 109.47072 * 2 1 4 4 C 1.48530 * 110.99918 * 52.60105 * 3 2 1 5 5 C 1.54940 * 103.22772 * 159.72252 * 4 3 2 6 6 H 1.09000 * 110.72311 * 80.94364 * 5 4 3 7 7 N 1.46501 * 110.87960 * 204.16148 * 5 4 3 8 8 S 1.65596 * 119.99780 * 258.59009 * 7 5 4 9 9 O 1.42097 * 106.40441 * 178.54113 * 8 7 5 10 10 O 1.42107 * 106.39966 * 311.45872 * 8 7 5 11 11 N 1.65599 * 107.21854 * 64.99581 * 8 7 5 12 12 C 1.46495 * 120.00320 * 269.99945 * 11 8 7 13 13 C 1.46506 * 119.99694 * 90.00547 * 11 8 7 14 14 H 1.08996 * 109.46776 * 359.97438 * 13 11 8 15 15 C 1.52995 * 109.47266 * 119.99642 * 13 11 8 16 16 C 1.50699 * 109.46538 * 239.99810 * 13 11 8 17 17 H 1.08004 * 120.00417 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99756 * 179.97438 * 16 13 11 19 19 N 1.31520 * 120.00303 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00235 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47219 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47508 * 120.00134 * 20 18 16 23 23 H 1.48497 * 109.47598 * 240.00160 * 20 18 16 24 24 C 1.54604 * 102.91923 * 322.58912 * 5 4 3 25 25 C 1.52998 * 110.30654 * 263.04030 * 24 5 4 26 26 C 1.52997 * 110.31002 * 140.87074 * 24 5 4 27 27 C 1.47899 * 110.99831 * 170.00251 * 3 2 1 28 28 H 1.08996 * 109.47340 * 60.00144 * 1 2 3 29 29 H 1.09002 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46936 * 299.99708 * 1 2 3 31 31 H 1.08993 * 109.47007 * 240.00050 * 2 1 3 32 32 H 1.08996 * 109.47340 * 119.99856 * 2 1 3 33 33 H 1.09002 * 110.67228 * 278.15582 * 4 3 2 34 34 H 1.09004 * 110.67104 * 41.28985 * 4 3 2 35 35 H 0.96996 * 119.99853 * 78.59197 * 7 5 4 36 36 H 1.08997 * 109.47181 * 90.00491 * 12 11 8 37 37 H 1.09005 * 109.47337 * 210.00167 * 12 11 8 38 38 H 1.09007 * 109.47133 * 329.99924 * 12 11 8 39 39 H 1.09003 * 109.47448 * 299.99785 * 15 13 11 40 40 H 1.09003 * 109.47050 * 60.00010 * 15 13 11 41 41 H 1.09002 * 109.47225 * 179.97438 * 15 13 11 42 42 H 0.96995 * 120.00150 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47006 * 177.16928 * 25 24 5 44 44 H 1.08996 * 109.46974 * 297.16843 * 25 24 5 45 45 H 1.08997 * 109.47514 * 57.17132 * 25 24 5 46 46 H 1.08997 * 109.47078 * 302.83281 * 26 24 5 47 47 H 1.09008 * 109.47129 * 62.82960 * 26 24 5 48 48 H 1.08996 * 109.47127 * 182.82602 * 26 24 5 49 49 H 1.08997 * 109.91760 * 333.50746 * 27 3 2 50 50 H 1.08995 * 109.91931 * 94.80655 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4031 2.1676 1.1016 5 6 2.3780 3.3586 1.2792 6 1 2.1857 4.1291 0.5326 7 7 2.2826 3.9143 2.6314 8 16 1.4247 5.3058 2.8961 9 8 1.4932 5.5600 4.2925 10 8 1.8581 6.2372 1.9143 11 7 -0.1624 4.9749 2.5583 12 6 -0.6792 5.1724 1.2018 13 6 -1.0497 4.4848 3.6160 14 1 -0.4917 4.4015 4.5486 15 6 -2.2110 5.4634 3.8017 16 6 -1.5897 3.1315 3.2316 17 1 -1.3012 2.6816 2.2930 18 6 -2.4521 2.4675 4.0780 19 7 -2.8038 3.0155 5.2207 20 14 -3.1221 0.7903 3.6012 21 1 -2.5779 0.3982 2.2763 22 1 -2.7165 -0.2124 4.6187 23 1 -4.6041 0.8512 3.5297 24 6 3.7623 2.7092 1.0511 25 6 4.4097 2.3543 2.3912 26 6 4.6671 3.6528 0.2563 27 6 3.4784 1.4315 0.2397 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 0.4125 2.5208 0.8150 34 1 1.3517 1.5732 2.0139 35 1 2.7219 3.4671 3.3716 36 1 -0.5553 4.2537 0.6284 37 1 -1.7371 5.4306 1.2500 38 1 -0.1298 5.9798 0.7176 39 1 -1.8203 6.4423 4.0798 40 1 -2.7689 5.5464 2.8690 41 1 -2.8713 5.0985 4.5884 42 1 -3.4108 2.5486 5.8160 43 1 5.3609 1.8526 2.2136 44 1 4.5809 3.2653 2.9645 45 1 3.7485 1.6921 2.9501 46 1 4.1873 3.9057 -0.6891 47 1 4.8382 4.5627 0.8318 48 1 5.6206 3.1624 0.0602 49 1 3.7895 0.5544 0.8071 50 1 4.0099 1.4697 -0.7111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364958523.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:51 Heat of formation + Delta-G solvation = -93.862312 kcal Electronic energy + Delta-G solvation = -30319.655158 eV Core-core repulsion = 26507.719773 eV Total energy + Delta-G solvation = -3811.935385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94123 -38.31960 -37.87560 -36.90617 -36.54123 -34.49020 -34.24855 -31.43627 -30.88396 -29.04742 -28.23339 -27.28543 -26.93095 -25.88549 -23.88374 -22.57850 -21.57024 -20.37842 -20.14447 -18.83835 -18.34525 -18.24978 -17.48505 -16.98729 -16.59673 -16.19409 -15.69501 -15.50749 -15.19693 -14.99852 -14.80816 -14.61128 -14.44531 -14.06260 -13.75021 -13.67289 -13.50057 -13.44399 -13.22129 -13.17226 -13.13454 -12.92308 -12.84082 -12.76883 -12.69934 -12.62734 -12.56699 -12.26698 -12.20590 -12.15359 -12.00701 -11.86533 -11.73014 -11.61186 -11.45367 -11.08374 -10.48959 -10.35178 -9.63230 -9.35406 -8.06925 -6.19954 -0.27889 1.41737 1.45902 1.54796 1.97730 2.45638 2.60318 3.08986 3.22330 3.43165 3.45484 3.66480 3.87331 4.12263 4.16004 4.23158 4.25992 4.32608 4.40461 4.49253 4.59908 4.69171 4.74077 4.75765 4.79075 4.84746 4.90058 4.96905 4.98923 5.01682 5.04820 5.06451 5.13127 5.17524 5.19610 5.21840 5.30265 5.31194 5.34583 5.48060 5.63998 5.73789 5.87245 5.90587 6.05523 6.12278 6.18452 6.32898 6.90079 7.49306 8.97963 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.006571 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.575275 B = 4259.838596 C = 6093.281222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.048 3.952 3 N -0.519 5.519 4 C 0.027 3.973 5 C 0.154 3.846 6 H 0.099 0.901 7 N -1.108 6.108 8 S 2.795 3.205 9 O -1.019 7.019 10 O -1.005 7.005 11 N -0.993 5.993 12 C 0.093 3.907 13 C 0.275 3.725 14 H 0.023 0.977 15 C -0.140 4.140 16 C -0.515 4.515 17 H 0.073 0.927 18 C 0.017 3.983 19 N -0.920 5.920 20 Si 0.947 3.053 21 H -0.256 1.256 22 H -0.290 1.290 23 H -0.287 1.287 24 C -0.076 4.076 25 C -0.144 4.144 26 C -0.134 4.134 27 C 0.047 3.953 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.419 0.581 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.018 0.982 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.261 0.739 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.078 0.922 49 H 0.055 0.945 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.320 -5.051 -11.734 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.080 4.080 3 N -0.244 5.244 4 C -0.103 4.103 5 C 0.046 3.954 6 H 0.117 0.883 7 N -0.870 5.870 8 S 2.804 3.196 9 O -1.004 7.004 10 O -0.988 6.988 11 N -0.835 5.835 12 C -0.052 4.052 13 C 0.171 3.829 14 H 0.041 0.959 15 C -0.200 4.200 16 C -0.554 4.554 17 H 0.091 0.909 18 C -0.182 4.182 19 N -0.560 5.560 20 Si 0.774 3.226 21 H -0.179 1.179 22 H -0.216 1.216 23 H -0.213 1.213 24 C -0.078 4.078 25 C -0.202 4.202 26 C -0.192 4.192 27 C -0.081 4.081 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.353 -3.926 -11.966 17.641 hybrid contribution -0.738 -1.645 1.476 2.330 sum 11.615 -5.571 -10.490 16.613 Atomic orbital electron populations 1.21871 0.95431 1.02114 1.01930 1.22274 0.95567 0.88864 1.01339 1.64839 1.04989 1.12292 1.42283 1.23620 0.98759 0.94768 0.93142 1.21789 0.96002 0.95651 0.81956 0.88270 1.55855 1.68564 1.46607 1.15971 1.01222 0.72820 0.73784 0.71747 1.93541 1.87242 1.85119 1.34463 1.93517 1.81513 1.61180 1.62592 1.57505 1.26610 1.81579 1.17776 1.21480 1.01473 1.01004 0.81252 1.18373 0.87597 0.92576 0.84385 0.95906 1.21954 1.00238 0.96269 1.01526 1.21644 1.26727 1.02004 1.05034 0.90926 1.25614 0.96794 1.00881 0.94926 1.70025 1.35586 1.39322 1.11072 0.85672 0.77922 0.80345 0.78708 1.17936 1.21647 1.21308 1.21639 0.93871 0.95584 0.96707 1.21896 1.01144 1.01667 0.95495 1.21852 0.99429 0.98370 0.99521 1.23087 0.88631 0.96092 1.00261 0.91784 0.91382 0.94375 0.88860 0.94915 0.90235 0.94020 0.74394 0.92434 0.90684 0.90629 0.96338 0.93527 0.91269 0.92999 0.90068 0.92128 0.93019 0.91936 0.93209 0.90329 0.92662 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.57 71.98 0.69 -3.13 16 2 C 0.05 1.02 5.75 86.30 0.50 1.52 16 3 N -0.52 -12.14 5.40 -883.02 -4.76 -16.90 16 4 C 0.03 0.76 4.79 86.65 0.41 1.17 16 5 C 0.15 4.14 3.16 46.20 0.15 4.29 16 6 H 0.10 2.76 7.30 -2.39 -0.02 2.74 16 7 N -1.11 -34.04 5.25 -164.37 -0.86 -34.91 16 8 S 2.80 107.44 6.12 -56.49 -0.35 107.09 16 9 O -1.02 -46.94 16.70 -128.00 -2.14 -49.08 16 10 O -1.00 -39.50 16.13 -128.00 -2.06 -41.56 16 11 N -0.99 -39.65 3.12 -520.45 -1.62 -41.27 16 12 C 0.09 3.14 9.90 127.77 1.26 4.40 16 13 C 0.28 13.21 2.62 44.24 0.12 13.32 16 14 H 0.02 1.27 6.91 -2.39 -0.02 1.25 16 15 C -0.14 -6.65 8.95 71.98 0.64 -6.00 16 16 C -0.51 -25.29 8.37 25.60 0.21 -25.07 16 17 H 0.07 3.39 7.15 -2.91 -0.02 3.37 16 18 C 0.02 0.88 5.30 84.65 0.45 1.32 16 19 N -0.92 -50.78 11.32 21.45 0.24 -50.53 16 20 Si 0.95 40.84 29.54 68.60 2.03 42.87 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 24 C -0.08 -1.56 0.95 -51.30 -0.05 -1.61 16 25 C -0.14 -2.73 7.02 71.98 0.51 -2.23 16 26 C -0.13 -2.44 8.22 71.98 0.59 -1.85 16 27 C 0.05 0.89 6.03 86.45 0.52 1.42 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.15 6.79 -2.39 -0.02 1.13 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 0.71 7.81 -2.39 -0.02 0.69 16 33 H 0.08 2.52 5.64 -2.39 -0.01 2.50 16 34 H 0.04 1.31 8.00 -2.39 -0.02 1.29 16 35 H 0.42 11.87 6.43 -96.75 -0.62 11.25 16 36 H 0.06 1.77 6.61 -2.39 -0.02 1.76 16 37 H 0.07 2.52 6.43 -2.38 -0.02 2.50 16 38 H 0.08 2.32 7.02 -2.38 -0.02 2.30 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 2.03 6.66 -2.39 -0.02 2.01 16 41 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 42 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.20 7.16 -2.39 -0.02 1.18 16 45 H 0.05 1.05 7.86 -2.39 -0.02 1.03 16 46 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 47 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 49 H 0.06 0.97 7.11 -2.39 -0.02 0.96 16 50 H 0.10 1.55 7.68 -2.39 -0.02 1.53 16 Total: -1.00 -62.91 387.60 -3.22 -66.14 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.30 Total: 30.60 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 6.00 Total: -12.44 kcal Atomic # 7 Polarization: -136.60 SS G_CDS: -7.01 Total: -143.61 kcal Atomic # 8 Polarization: -86.44 SS G_CDS: -4.20 Total: -90.64 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 16 Polarization: 107.44 SS G_CDS: -0.35 Total: 107.09 kcal Total: -62.91 -3.22 -66.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364958523.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.727 kcal (2) G-P(sol) polarization free energy of solvation -62.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds