Wall clock time and date at job start Tue Mar 31 2020 17:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 C 1.50699 * 109.47102 * 240.00221 * 2 1 3 5 5 H 1.08001 * 120.00121 * 239.99632 * 4 2 1 6 6 C 1.37883 * 119.99804 * 60.00162 * 4 2 1 7 7 N 1.31511 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99773 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47201 * 89.99674 * 8 6 4 10 10 H 1.48500 * 109.46733 * 209.99897 * 8 6 4 11 11 H 1.48499 * 109.46932 * 329.99364 * 8 6 4 12 12 N 1.46505 * 109.47228 * 120.00492 * 2 1 3 13 13 C 1.46494 * 120.00309 * 59.99976 * 12 2 1 14 14 S 1.65605 * 119.99527 * 239.99942 * 12 2 1 15 15 O 1.42096 * 106.40590 * 336.45948 * 14 12 2 16 16 O 1.42108 * 106.39755 * 203.53861 * 14 12 2 17 17 N 1.65597 * 107.21939 * 90.00151 * 14 12 2 18 18 C 1.46499 * 119.99926 * 64.71969 * 17 14 12 19 19 C 1.53004 * 109.47094 * 165.27799 * 18 17 14 20 20 C 1.53005 * 109.47044 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.50098 * 54.91934 * 20 19 18 22 22 C 1.53116 * 109.49897 * 174.99723 * 20 19 18 23 23 C 1.53122 * 109.15690 * 177.59635 * 22 20 19 24 24 C 1.53035 * 109.28166 * 302.34759 * 23 22 20 25 25 N 1.46845 * 109.52240 * 59.17829 * 24 23 22 26 26 C 1.46900 * 111.00308 * 174.16161 * 25 24 23 27 27 C 1.46847 * 111.19859 * 298.26096 * 25 24 23 28 28 H 1.09002 * 109.47103 * 299.99110 * 1 2 3 29 29 H 1.08997 * 109.47761 * 59.99841 * 1 2 3 30 30 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99601 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47247 * 270.00097 * 13 12 2 33 33 H 1.09005 * 109.46794 * 30.00043 * 13 12 2 34 34 H 1.08998 * 109.47246 * 150.00145 * 13 12 2 35 35 H 0.97001 * 120.00224 * 245.00182 * 17 14 12 36 36 H 1.09007 * 109.47241 * 285.27714 * 18 17 14 37 37 H 1.08995 * 109.47308 * 45.27753 * 18 17 14 38 38 H 1.08994 * 109.46776 * 299.99858 * 19 18 17 39 39 H 1.09002 * 109.46826 * 60.00127 * 19 18 17 40 40 H 1.09000 * 109.52582 * 297.50182 * 22 20 19 41 41 H 1.08996 * 109.52492 * 57.69868 * 22 20 19 42 42 H 1.08995 * 109.50444 * 62.28787 * 23 22 20 43 43 H 1.09000 * 109.50173 * 182.40682 * 23 22 20 44 44 H 1.08993 * 109.46598 * 179.19697 * 24 23 22 45 45 H 1.09002 * 109.46170 * 299.16438 * 24 23 22 46 46 H 1.09000 * 109.46970 * 63.95592 * 26 25 24 47 47 H 1.08992 * 109.47506 * 183.95342 * 26 25 24 48 48 H 1.08995 * 109.47457 * 303.95925 * 26 25 24 49 49 H 1.09005 * 109.46018 * 301.72247 * 27 25 24 50 50 H 1.09002 * 109.46389 * 181.75958 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3427 -2.1614 -4.4119 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7580 -3.7123 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1829 1.5749 16 8 3.7119 -0.8791 2.9814 17 7 1.9608 0.8089 3.3998 18 6 1.1466 -0.0354 4.2776 19 6 0.5990 0.8072 5.4314 20 6 -0.2519 -0.0745 6.3477 21 1 0.3355 -0.9323 6.6754 22 6 -0.6971 0.7364 7.5679 23 6 -1.5970 -0.1346 8.4489 24 6 -2.7930 -0.6193 7.6265 25 7 -2.3145 -1.3899 6.4717 26 6 -3.4368 -1.9877 5.7361 27 6 -1.4869 -0.5609 5.5862 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7087 1.1615 -3.4843 32 1 0.7376 -2.1445 1.9993 33 1 1.5296 -2.5969 0.4706 34 1 2.4629 -2.5820 1.9862 35 1 1.9054 1.7749 3.4682 36 1 0.3169 -0.4564 3.7095 37 1 1.7604 -0.8429 4.6767 38 1 1.4286 1.2281 5.9994 39 1 -0.0148 1.6146 5.0322 40 1 0.1785 1.0483 8.1373 41 1 -1.2508 1.6156 7.2386 42 1 -1.0314 -0.9937 8.8097 43 1 -1.9519 0.4506 9.2973 44 1 -3.4282 -1.2513 8.2469 45 1 -3.3659 0.2399 7.2775 46 1 -4.0608 -1.1968 5.3198 47 1 -3.0516 -2.6096 4.9281 48 1 -4.0309 -2.6000 6.4144 49 1 -2.0659 0.2980 5.2468 50 1 -1.1734 -1.1506 4.7247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424199736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:21 Heat of formation + Delta-G solvation = -88.640587 kcal Electronic energy + Delta-G solvation = -28408.929197 eV Core-core repulsion = 24597.220243 eV Total energy + Delta-G solvation = -3811.708954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.51417 -36.68849 -36.21564 -35.99960 -35.19270 -33.87485 -32.56756 -32.01661 -29.09274 -27.87781 -27.00523 -25.48754 -25.16377 -23.94765 -22.80939 -21.32841 -20.74593 -19.97228 -18.67030 -17.24419 -16.81942 -16.42923 -16.11855 -15.86120 -15.53266 -15.02021 -14.88938 -14.66623 -14.34479 -14.10797 -13.69887 -13.41184 -13.25464 -13.14604 -12.74420 -12.60030 -12.48067 -12.27297 -12.01008 -11.96702 -11.79779 -11.50414 -11.48955 -11.34441 -11.32469 -11.22187 -11.19552 -10.90917 -10.82684 -10.80933 -10.54763 -10.43824 -10.41580 -10.22405 -10.04672 -9.28248 -9.20075 -8.57471 -8.45359 -7.96114 -6.07231 -4.13603 1.25866 3.28425 3.35529 3.39738 3.53291 3.67543 4.14997 4.40412 4.41157 4.56081 4.59299 4.79842 4.95683 5.03270 5.08576 5.14996 5.17240 5.21765 5.24648 5.30651 5.37728 5.43069 5.49747 5.60900 5.63832 5.67672 5.69642 5.72694 5.77371 5.85644 5.89782 6.05434 6.12381 6.15324 6.24409 6.38301 6.67328 6.78484 6.81912 6.84188 6.84701 7.04142 7.19259 7.50768 7.63802 7.79961 8.05449 8.28153 8.88520 9.52030 10.98507 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.003095 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.610210 B = 9045.366766 C =10006.286528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.989 5.989 13 C 0.096 3.904 14 S 2.780 3.220 15 O -0.976 6.976 16 O -0.998 6.998 17 N -1.134 6.134 18 C 0.120 3.880 19 C -0.120 4.120 20 C -0.083 4.083 21 H 0.084 0.916 22 C -0.116 4.116 23 C -0.117 4.117 24 C 0.054 3.946 25 N -0.544 5.544 26 C 0.024 3.976 27 C 0.055 3.945 28 H 0.009 0.991 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.035 0.965 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 -1.562 20.010 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.832 5.832 13 C -0.051 4.051 14 S 2.788 3.212 15 O -0.960 6.960 16 O -0.981 6.981 17 N -0.893 5.893 18 C -0.007 4.007 19 C -0.160 4.160 20 C -0.103 4.103 21 H 0.102 0.898 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.074 4.074 25 N -0.268 5.268 26 C -0.124 4.124 27 C -0.072 4.072 28 H 0.028 0.972 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.053 0.947 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.358 -1.988 20.028 21.429 hybrid contribution -0.848 0.630 -1.233 1.623 sum -8.205 -1.358 18.795 20.553 Atomic orbital electron populations 1.22099 0.98284 0.99673 1.00462 1.18711 0.91239 0.93010 0.80484 0.92408 1.21348 1.31547 1.13010 0.90081 0.91890 1.24909 0.94975 0.95002 0.99005 1.69860 1.36588 1.22707 1.23757 0.86495 0.79296 0.79284 0.82339 1.20668 1.21136 1.19815 1.57643 1.69897 1.19835 1.35777 1.21317 0.98653 0.82462 1.02646 1.01902 0.73658 0.73157 0.72453 1.93611 1.74467 1.55985 1.71931 1.93522 1.69283 1.60788 1.74507 1.56203 1.62421 1.17280 1.53388 1.21259 0.94677 0.93452 0.91279 1.21809 0.99637 0.98435 0.96078 1.21164 0.95727 0.98506 0.94875 0.89784 1.21633 0.99534 0.98004 0.96211 1.21582 0.96552 0.99808 0.97548 1.22101 0.96603 0.96037 0.92646 1.61905 1.21078 1.34602 1.09219 1.22359 0.92652 0.98836 0.98548 1.22265 0.93973 0.95713 0.95296 0.97174 0.89014 0.94887 0.92721 0.94598 0.89864 0.91892 0.75663 0.91864 0.90647 0.90803 0.91235 0.91560 0.92193 0.90999 0.91623 0.90976 0.95084 0.95698 0.91011 0.91494 0.94685 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.97 37.15 0.33 -2.94 16 2 C 0.27 6.54 2.62 -69.08 -0.18 6.36 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.98 7.99 -34.44 -0.28 -14.25 16 5 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.99 -20.36 3.12 -115.86 -0.36 -20.72 16 13 C 0.10 1.69 9.66 59.84 0.58 2.27 16 14 S 2.78 54.36 6.14 -107.50 -0.66 53.70 16 15 O -0.98 -22.83 16.70 -57.17 -0.95 -23.79 16 16 O -1.00 -20.71 16.22 -57.17 -0.93 -21.63 16 17 N -1.13 -16.49 6.05 -10.61 -0.06 -16.55 16 18 C 0.12 1.45 6.01 -4.04 -0.02 1.42 16 19 C -0.12 -1.13 4.83 -26.73 -0.13 -1.26 16 20 C -0.08 -0.74 2.35 -90.54 -0.21 -0.95 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 C -0.12 -0.89 5.29 -26.61 -0.14 -1.03 16 23 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 24 C 0.05 0.43 5.46 -3.84 -0.02 0.41 16 25 N -0.54 -5.08 4.91 -242.97 -1.19 -6.27 16 26 C 0.02 0.20 9.59 60.06 0.58 0.78 16 27 C 0.06 0.53 4.48 -3.84 -0.02 0.51 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 30 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 34 H 0.06 1.05 7.02 -51.93 -0.36 0.68 16 35 H 0.41 5.23 8.65 -34.47 -0.30 4.93 16 36 H 0.06 0.75 6.59 -51.93 -0.34 0.41 16 37 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 45 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 49 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.08 0.82 6.60 -51.93 -0.34 0.47 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -32.03 395.93 -11.40 -43.43 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -9.04 Total: 1.98 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 0.23 Total: -8.08 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.99 Total: -67.67 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.88 Total: -45.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 54.36 SS G_CDS: -0.66 Total: 53.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.03 -11.40 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424199736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.212 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds