Wall clock time and date at job start Tue Mar 31 2020 17:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 C 1.50699 * 109.47102 * 240.00221 * 2 1 3 5 5 H 1.08001 * 120.00121 * 239.99632 * 4 2 1 6 6 C 1.37883 * 119.99804 * 60.00162 * 4 2 1 7 7 N 1.31511 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99773 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47201 * 89.99674 * 8 6 4 10 10 H 1.48500 * 109.46733 * 209.99897 * 8 6 4 11 11 H 1.48499 * 109.46932 * 329.99364 * 8 6 4 12 12 N 1.46505 * 109.47228 * 120.00492 * 2 1 3 13 13 C 1.46494 * 120.00309 * 59.99976 * 12 2 1 14 14 S 1.65605 * 119.99527 * 239.99942 * 12 2 1 15 15 O 1.42096 * 106.40590 * 336.45948 * 14 12 2 16 16 O 1.42108 * 106.39755 * 203.53861 * 14 12 2 17 17 N 1.65597 * 107.21939 * 90.00151 * 14 12 2 18 18 C 1.46499 * 119.99926 * 64.71969 * 17 14 12 19 19 C 1.53004 * 109.47094 * 165.27799 * 18 17 14 20 20 C 1.53005 * 109.47044 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.50098 * 54.91934 * 20 19 18 22 22 C 1.53116 * 109.49897 * 174.99723 * 20 19 18 23 23 C 1.53122 * 109.15690 * 177.59635 * 22 20 19 24 24 C 1.53035 * 109.28166 * 302.34759 * 23 22 20 25 25 N 1.46845 * 109.52240 * 59.17829 * 24 23 22 26 26 C 1.46900 * 111.00308 * 174.16161 * 25 24 23 27 27 C 1.46847 * 111.19859 * 298.26096 * 25 24 23 28 28 H 1.09002 * 109.47103 * 299.99110 * 1 2 3 29 29 H 1.08997 * 109.47761 * 59.99841 * 1 2 3 30 30 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99601 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47247 * 270.00097 * 13 12 2 33 33 H 1.09005 * 109.46794 * 30.00043 * 13 12 2 34 34 H 1.08998 * 109.47246 * 150.00145 * 13 12 2 35 35 H 0.97001 * 120.00224 * 245.00182 * 17 14 12 36 36 H 1.09007 * 109.47241 * 285.27714 * 18 17 14 37 37 H 1.08995 * 109.47308 * 45.27753 * 18 17 14 38 38 H 1.08994 * 109.46776 * 299.99858 * 19 18 17 39 39 H 1.09002 * 109.46826 * 60.00127 * 19 18 17 40 40 H 1.09000 * 109.52582 * 297.50182 * 22 20 19 41 41 H 1.08996 * 109.52492 * 57.69868 * 22 20 19 42 42 H 1.08995 * 109.50444 * 62.28787 * 23 22 20 43 43 H 1.09000 * 109.50173 * 182.40682 * 23 22 20 44 44 H 1.08993 * 109.46598 * 179.19697 * 24 23 22 45 45 H 1.09002 * 109.46170 * 299.16438 * 24 23 22 46 46 H 1.09000 * 109.46970 * 63.95592 * 26 25 24 47 47 H 1.08992 * 109.47506 * 183.95342 * 26 25 24 48 48 H 1.08995 * 109.47457 * 303.95925 * 26 25 24 49 49 H 1.09005 * 109.46018 * 301.72247 * 27 25 24 50 50 H 1.09002 * 109.46389 * 181.75958 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3427 -2.1614 -4.4119 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7580 -3.7123 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1829 1.5749 16 8 3.7119 -0.8791 2.9814 17 7 1.9608 0.8089 3.3998 18 6 1.1466 -0.0354 4.2776 19 6 0.5990 0.8072 5.4314 20 6 -0.2519 -0.0745 6.3477 21 1 0.3355 -0.9323 6.6754 22 6 -0.6971 0.7364 7.5679 23 6 -1.5970 -0.1346 8.4489 24 6 -2.7930 -0.6193 7.6265 25 7 -2.3145 -1.3899 6.4717 26 6 -3.4368 -1.9877 5.7361 27 6 -1.4869 -0.5609 5.5862 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7087 1.1615 -3.4843 32 1 0.7376 -2.1445 1.9993 33 1 1.5296 -2.5969 0.4706 34 1 2.4629 -2.5820 1.9862 35 1 1.9054 1.7749 3.4682 36 1 0.3169 -0.4564 3.7095 37 1 1.7604 -0.8429 4.6767 38 1 1.4286 1.2281 5.9994 39 1 -0.0148 1.6146 5.0322 40 1 0.1785 1.0483 8.1373 41 1 -1.2508 1.6156 7.2386 42 1 -1.0314 -0.9937 8.8097 43 1 -1.9519 0.4506 9.2973 44 1 -3.4282 -1.2513 8.2469 45 1 -3.3659 0.2399 7.2775 46 1 -4.0608 -1.1968 5.3198 47 1 -3.0516 -2.6096 4.9281 48 1 -4.0309 -2.6000 6.4144 49 1 -2.0659 0.2980 5.2468 50 1 -1.1734 -1.1506 4.7247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424199736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:20 Heat of formation + Delta-G solvation = -111.961296 kcal Electronic energy + Delta-G solvation = -28409.940459 eV Core-core repulsion = 24597.220243 eV Total energy + Delta-G solvation = -3812.720216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.19267 -38.32933 -37.88836 -37.06354 -36.87562 -34.67492 -34.51129 -32.77354 -30.91297 -28.73886 -27.64857 -27.23564 -26.97707 -24.75665 -23.50332 -22.64238 -22.01296 -20.68766 -20.12855 -18.78860 -18.58386 -18.08815 -17.35178 -16.82784 -16.58105 -16.47793 -15.90027 -15.58448 -15.32934 -15.14790 -15.03799 -14.79002 -14.42504 -14.34469 -13.92764 -13.77630 -13.55417 -13.45610 -13.19904 -13.15507 -13.11243 -13.01233 -12.97269 -12.92872 -12.69500 -12.61305 -12.46825 -12.21902 -12.15062 -12.12580 -11.91190 -11.83579 -11.50074 -11.20629 -11.17889 -11.12654 -10.50664 -10.37187 -9.64691 -9.25626 -8.11766 -6.24988 -0.29195 1.42076 1.44312 1.53716 2.06461 2.43531 2.65127 3.02181 3.16712 3.44978 3.74469 3.89304 3.91452 4.11135 4.16914 4.20812 4.36455 4.38326 4.46416 4.56598 4.56927 4.63373 4.70789 4.76439 4.77291 4.79614 4.88764 4.96206 4.98756 5.01410 5.04109 5.04812 5.09512 5.15139 5.17010 5.21331 5.27204 5.33265 5.38429 5.56134 5.61611 5.70281 5.88114 6.07751 6.15229 6.19127 6.23129 6.30802 6.82733 7.43799 8.92455 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.003095 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.610210 B = 9045.366766 C =10006.286528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.996 5.996 13 C 0.091 3.909 14 S 2.795 3.205 15 O -1.019 7.019 16 O -1.010 7.010 17 N -1.119 6.119 18 C 0.112 3.888 19 C -0.112 4.112 20 C -0.078 4.078 21 H 0.079 0.921 22 C -0.114 4.114 23 C -0.115 4.115 24 C 0.052 3.948 25 N -0.555 5.555 26 C 0.024 3.976 27 C 0.055 3.945 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.421 0.579 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.029 0.971 46 H 0.023 0.977 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.030 0.970 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 -2.126 21.456 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.838 5.838 13 C -0.054 4.054 14 S 2.804 3.196 15 O -1.004 7.004 16 O -0.994 6.994 17 N -0.882 5.882 18 C -0.013 4.013 19 C -0.152 4.152 20 C -0.098 4.098 21 H 0.097 0.903 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.076 4.076 25 N -0.280 5.280 26 C -0.124 4.124 27 C -0.073 4.073 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.256 0.744 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.049 0.951 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.245 -2.569 21.484 23.155 hybrid contribution -0.590 0.792 -1.582 1.865 sum -8.835 -1.776 19.902 21.847 Atomic orbital electron populations 1.21884 0.96792 1.00147 1.00341 1.18379 0.92227 0.91309 0.81129 0.95804 1.21676 1.31614 1.13064 0.91521 0.92454 1.25633 0.95233 0.95709 1.01651 1.69975 1.37325 1.23675 1.24329 0.85602 0.78789 0.78437 0.79078 1.19436 1.20974 1.19984 1.57517 1.69921 1.21087 1.35281 1.21492 1.00523 0.80760 1.02655 1.01197 0.73657 0.72328 0.72389 1.93548 1.76025 1.57399 1.73393 1.93501 1.70006 1.61301 1.74549 1.55762 1.62064 1.18069 1.52297 1.21524 0.94404 0.93624 0.91762 1.21763 1.00012 0.98211 0.95164 1.21110 0.95179 0.98361 0.95122 0.90289 1.21623 0.99978 0.97852 0.95742 1.21578 0.96122 0.99747 0.97792 1.22166 0.97031 0.96011 0.92348 1.61938 1.21557 1.34870 1.09608 1.22383 0.92512 0.98839 0.98713 1.22251 0.94298 0.95470 0.95316 0.94680 0.91663 0.93984 0.92654 0.91410 0.91016 0.91032 0.74359 0.91341 0.90727 0.89933 0.90610 0.90733 0.92063 0.91459 0.90129 0.90176 0.95301 0.95863 0.91333 0.90439 0.95142 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.97 71.98 0.65 -5.22 16 2 C 0.27 13.43 2.62 44.24 0.12 13.55 16 3 H 0.02 1.34 6.91 -2.39 -0.02 1.32 16 4 C -0.54 -29.23 7.99 25.60 0.20 -29.03 16 5 H 0.06 3.09 7.33 -2.91 -0.02 3.07 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -51.35 11.32 21.45 0.24 -51.11 16 8 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 N -1.00 -40.57 3.12 -520.46 -1.62 -42.20 16 13 C 0.09 3.10 9.66 127.77 1.23 4.33 16 14 S 2.80 108.42 6.14 -56.49 -0.35 108.08 16 15 O -1.02 -48.53 16.70 -128.00 -2.14 -50.67 16 16 O -1.01 -41.17 16.22 -128.00 -2.08 -43.25 16 17 N -1.12 -31.05 6.05 -187.48 -1.14 -32.19 16 18 C 0.11 2.50 6.01 86.38 0.52 3.02 16 19 C -0.11 -1.86 4.83 30.60 0.15 -1.71 16 20 C -0.08 -1.22 2.35 -10.74 -0.03 -1.25 16 21 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 22 C -0.11 -1.48 5.29 30.67 0.16 -1.32 16 23 C -0.11 -1.41 6.09 30.65 0.19 -1.22 16 24 C 0.05 0.73 5.46 86.33 0.47 1.20 16 25 N -0.56 -9.47 4.91 -922.63 -4.53 -14.00 16 26 C 0.02 0.36 9.59 127.69 1.22 1.58 16 27 C 0.05 0.95 4.48 86.32 0.39 1.34 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 30 H 0.04 1.74 7.67 -2.39 -0.02 1.72 16 31 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.60 7.02 -2.38 -0.02 2.58 16 34 H 0.07 2.29 7.02 -2.39 -0.02 2.27 16 35 H 0.42 10.16 8.65 -96.74 -0.84 9.32 16 36 H 0.07 1.48 6.59 -2.38 -0.02 1.46 16 37 H 0.07 1.70 7.76 -2.39 -0.02 1.68 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 45 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 48 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 49 H 0.03 0.55 8.14 -2.38 -0.02 0.54 16 50 H 0.07 1.37 6.60 -2.39 -0.02 1.36 16 Total: -1.00 -68.44 395.93 -3.79 -72.23 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.07 Total: 21.05 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.72 Total: -13.32 kcal Atomic # 7 Polarization: -132.45 SS G_CDS: -7.05 Total: -139.50 kcal Atomic # 8 Polarization: -89.70 SS G_CDS: -4.21 Total: -93.92 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 108.42 SS G_CDS: -0.35 Total: 108.08 kcal Total: -68.44 -3.79 -72.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424199736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.733 kcal (2) G-P(sol) polarization free energy of solvation -68.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds