Wall clock time and date at job start Tue Mar 31 2020 17:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.46510 * 120.00089 * 59.99586 * 12 2 1 14 14 S 1.65604 * 120.00327 * 240.00206 * 12 2 1 15 15 O 1.42103 * 106.40430 * 203.53883 * 14 12 2 16 16 O 1.42102 * 106.39828 * 336.45857 * 14 12 2 17 17 N 1.65595 * 107.21718 * 89.99813 * 14 12 2 18 18 C 1.46497 * 120.00600 * 65.00174 * 17 14 12 19 19 C 1.52992 * 109.47529 * 164.99687 * 18 17 14 20 20 C 1.52993 * 109.47362 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.50339 * 305.07931 * 20 19 18 22 22 C 1.53126 * 109.50712 * 185.00278 * 20 19 18 23 23 C 1.53116 * 109.16084 * 182.40412 * 22 20 19 24 24 C 1.53041 * 109.28003 * 57.65585 * 23 22 20 25 25 N 1.46850 * 109.52023 * 300.81552 * 24 23 22 26 26 C 1.46898 * 110.99889 * 185.83967 * 25 24 23 27 27 C 1.46854 * 111.19659 * 61.74383 * 25 24 23 28 28 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 30 30 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46654 * 90.00209 * 13 12 2 33 33 H 1.08993 * 109.47171 * 209.99894 * 13 12 2 34 34 H 1.08996 * 109.46700 * 330.00687 * 13 12 2 35 35 H 0.97008 * 119.99823 * 245.00522 * 17 14 12 36 36 H 1.08994 * 109.46991 * 285.00388 * 18 17 14 37 37 H 1.09005 * 109.46815 * 44.99735 * 18 17 14 38 38 H 1.09003 * 109.47418 * 300.00611 * 19 18 17 39 39 H 1.09005 * 109.47033 * 60.00181 * 19 18 17 40 40 H 1.09000 * 109.51813 * 302.30797 * 22 20 19 41 41 H 1.08994 * 109.52263 * 62.49593 * 22 20 19 42 42 H 1.08998 * 109.50148 * 177.59631 * 23 22 20 43 43 H 1.08999 * 109.50355 * 297.67124 * 23 22 20 44 44 H 1.08995 * 109.46121 * 60.83129 * 24 23 22 45 45 H 1.08994 * 109.45970 * 180.81648 * 24 23 22 46 46 H 1.08999 * 109.46865 * 63.95888 * 26 25 24 47 47 H 1.09000 * 109.47152 * 183.95765 * 26 25 24 48 48 H 1.09001 * 109.47255 * 303.95508 * 26 25 24 49 49 H 1.09002 * 109.46038 * 178.23946 * 27 25 24 50 50 H 1.08997 * 109.46035 * 58.27429 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6086 0.8074 5.4377 20 6 -0.2365 -0.0744 6.3590 21 1 -1.0152 -0.5675 5.7771 22 6 -0.8811 0.7912 7.4453 23 6 -1.6758 -0.1066 8.3976 24 6 -0.7414 -1.1604 8.9964 25 7 -0.1508 -1.9625 7.9174 26 6 0.6436 -3.0723 8.4608 27 6 0.6561 -1.1291 7.0169 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7011 1.1560 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5001 34 1 0.6904 -2.3002 0.9845 35 1 1.9054 1.7750 3.4681 36 1 0.3188 -0.4567 3.7177 37 1 1.7669 -0.8425 4.6781 38 1 1.4408 1.2289 6.0017 39 1 -0.0074 1.6146 5.0413 40 1 -0.1042 1.3153 8.0021 41 1 -1.5514 1.5160 6.9835 42 1 -2.1020 0.4987 9.1977 43 1 -2.4775 -0.6002 7.8483 44 1 0.0517 -0.6658 9.5572 45 1 -1.3073 -1.8102 9.6638 46 1 -0.0095 -3.7537 9.0060 47 1 1.1264 -3.6078 7.6434 48 1 1.4033 -2.6787 9.1361 49 1 1.1053 -1.7563 6.2468 50 1 1.4427 -0.6348 7.5870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424199740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:24 Heat of formation + Delta-G solvation = -87.666899 kcal Electronic energy + Delta-G solvation = -28272.820374 eV Core-core repulsion = 24461.153642 eV Total energy + Delta-G solvation = -3811.666732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.53252 -36.69411 -36.23019 -36.00090 -35.19348 -33.89115 -32.56018 -32.02983 -29.07422 -27.89336 -27.03048 -25.56930 -25.11072 -23.96733 -22.83066 -21.34044 -20.72314 -19.96560 -18.71008 -17.24505 -16.79595 -16.43595 -16.13790 -15.79179 -15.57735 -15.01551 -14.90629 -14.67839 -14.34283 -14.16473 -13.73017 -13.43598 -13.26390 -13.11884 -12.80732 -12.60309 -12.48999 -12.26059 -12.14263 -11.97496 -11.71621 -11.52721 -11.43039 -11.41162 -11.32487 -11.22422 -11.20632 -10.94622 -10.84092 -10.78183 -10.55393 -10.49624 -10.32717 -10.25921 -9.99149 -9.29577 -9.19473 -8.60046 -8.43328 -7.95296 -6.05415 -4.11783 1.25005 3.31801 3.35975 3.39230 3.52720 3.65251 4.15101 4.39545 4.42068 4.54910 4.58282 4.78251 4.94399 5.01229 5.08789 5.09843 5.17481 5.18698 5.25989 5.27560 5.34720 5.40952 5.47682 5.55288 5.60759 5.64114 5.66287 5.70218 5.78635 5.80804 5.91855 6.03751 6.14050 6.16940 6.23515 6.39297 6.64828 6.79259 6.79407 6.81539 6.81781 7.03921 7.19206 7.51526 7.65924 7.81397 8.06462 8.29974 8.90218 9.53814 11.00276 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.002755 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.488769 B =10162.085171 C =10267.167830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.998 6.998 16 O -0.976 6.976 17 N -1.134 6.134 18 C 0.119 3.881 19 C -0.120 4.120 20 C -0.083 4.083 21 H 0.085 0.915 22 C -0.116 4.116 23 C -0.117 4.117 24 C 0.055 3.945 25 N -0.544 5.544 26 C 0.024 3.976 27 C 0.054 3.946 28 H 0.033 0.967 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.024 0.976 49 H 0.081 0.919 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 -2.201 22.024 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.037 4.037 14 S 2.788 3.212 15 O -0.981 6.981 16 O -0.960 6.960 17 N -0.893 5.893 18 C -0.007 4.007 19 C -0.160 4.160 20 C -0.103 4.103 21 H 0.103 0.897 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.073 4.073 25 N -0.268 5.268 26 C -0.124 4.124 27 C -0.073 4.073 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.042 0.958 49 H 0.099 0.901 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.369 -2.451 21.599 22.391 hybrid contribution 0.493 0.250 -0.370 0.665 sum -4.877 -2.202 21.229 21.893 Atomic orbital electron populations 1.22118 0.98301 0.99700 1.00629 1.18713 0.91244 0.92975 0.80485 0.92382 1.21311 1.31507 1.13062 0.90084 0.92011 1.24908 0.94968 0.95031 0.98990 1.69851 1.36519 1.22761 1.23850 0.86554 0.79325 0.79595 0.81897 1.20239 1.21234 1.20178 1.57676 1.70004 1.19778 1.35817 1.21158 1.01731 0.82181 0.98661 1.01915 0.73656 0.73164 0.72423 1.93530 1.69187 1.60808 1.74587 1.93611 1.74439 1.55996 1.71927 1.56210 1.62621 1.17313 1.53177 1.21266 0.94905 0.93407 0.91158 1.21807 0.99826 0.98491 0.95833 1.21166 0.97889 0.95244 0.95990 0.89685 1.21631 0.99369 0.97675 0.96696 1.21584 0.98339 0.96616 0.98976 1.22102 0.97330 0.95188 0.92716 1.61905 1.34903 1.11303 1.18665 1.22365 0.96458 0.93957 0.99631 1.22282 0.94180 0.94899 0.95964 0.94780 0.97017 0.88898 0.92671 0.93295 0.93425 0.90960 0.75619 0.91663 0.90840 0.91296 0.90707 0.92251 0.91474 0.91605 0.90941 0.95102 0.90957 0.91400 0.91084 0.95772 0.90081 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.95 37.16 0.33 -3.00 16 2 C 0.27 6.57 2.62 -69.09 -0.18 6.39 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -14.08 8.37 -34.44 -0.29 -14.37 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.86 11.31 55.43 0.63 -24.24 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.99 -20.46 3.12 -115.85 -0.36 -20.82 16 13 C 0.11 1.94 9.53 59.85 0.57 2.51 16 14 S 2.78 54.33 6.09 -107.50 -0.66 53.68 16 15 O -1.00 -20.66 16.68 -57.17 -0.95 -21.62 16 16 O -0.98 -22.84 16.70 -57.17 -0.95 -23.80 16 17 N -1.13 -16.40 6.05 -10.62 -0.06 -16.46 16 18 C 0.12 1.43 6.01 -4.05 -0.02 1.40 16 19 C -0.12 -1.12 4.83 -26.74 -0.13 -1.25 16 20 C -0.08 -0.73 2.35 -90.54 -0.21 -0.94 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.12 -0.88 5.29 -26.61 -0.14 -1.02 16 23 C -0.12 -0.84 6.09 -26.65 -0.16 -1.01 16 24 C 0.05 0.42 5.46 -3.83 -0.02 0.40 16 25 N -0.54 -4.95 4.91 -242.96 -1.19 -6.14 16 26 C 0.02 0.19 9.62 60.06 0.58 0.77 16 27 C 0.05 0.51 4.48 -3.83 -0.02 0.49 16 28 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 34 H 0.07 1.24 6.43 -51.93 -0.33 0.90 16 35 H 0.41 5.20 8.65 -34.47 -0.30 4.90 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.90 6.20 -51.93 -0.32 0.57 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 48 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.08 0.80 6.51 -51.93 -0.34 0.46 16 50 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -32.23 395.93 -11.41 -43.64 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -9.01 Total: 1.57 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 0.21 Total: -8.00 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.99 Total: -67.66 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.91 Total: -45.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 54.33 SS G_CDS: -0.66 Total: 53.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.23 -11.41 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424199740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.031 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds