Wall clock time and date at job start Tue Mar 31 2020 17:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.46510 * 120.00089 * 59.99586 * 12 2 1 14 14 S 1.65604 * 120.00327 * 240.00206 * 12 2 1 15 15 O 1.42103 * 106.40430 * 203.53883 * 14 12 2 16 16 O 1.42102 * 106.39828 * 336.45857 * 14 12 2 17 17 N 1.65595 * 107.21718 * 89.99813 * 14 12 2 18 18 C 1.46497 * 120.00600 * 65.00174 * 17 14 12 19 19 C 1.52992 * 109.47529 * 164.99687 * 18 17 14 20 20 C 1.52993 * 109.47362 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.50339 * 305.07931 * 20 19 18 22 22 C 1.53126 * 109.50712 * 185.00278 * 20 19 18 23 23 C 1.53116 * 109.16084 * 182.40412 * 22 20 19 24 24 C 1.53041 * 109.28003 * 57.65585 * 23 22 20 25 25 N 1.46850 * 109.52023 * 300.81552 * 24 23 22 26 26 C 1.46898 * 110.99889 * 185.83967 * 25 24 23 27 27 C 1.46854 * 111.19659 * 61.74383 * 25 24 23 28 28 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 30 30 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46654 * 90.00209 * 13 12 2 33 33 H 1.08993 * 109.47171 * 209.99894 * 13 12 2 34 34 H 1.08996 * 109.46700 * 330.00687 * 13 12 2 35 35 H 0.97008 * 119.99823 * 245.00522 * 17 14 12 36 36 H 1.08994 * 109.46991 * 285.00388 * 18 17 14 37 37 H 1.09005 * 109.46815 * 44.99735 * 18 17 14 38 38 H 1.09003 * 109.47418 * 300.00611 * 19 18 17 39 39 H 1.09005 * 109.47033 * 60.00181 * 19 18 17 40 40 H 1.09000 * 109.51813 * 302.30797 * 22 20 19 41 41 H 1.08994 * 109.52263 * 62.49593 * 22 20 19 42 42 H 1.08998 * 109.50148 * 177.59631 * 23 22 20 43 43 H 1.08999 * 109.50355 * 297.67124 * 23 22 20 44 44 H 1.08995 * 109.46121 * 60.83129 * 24 23 22 45 45 H 1.08994 * 109.45970 * 180.81648 * 24 23 22 46 46 H 1.08999 * 109.46865 * 63.95888 * 26 25 24 47 47 H 1.09000 * 109.47152 * 183.95765 * 26 25 24 48 48 H 1.09001 * 109.47255 * 303.95508 * 26 25 24 49 49 H 1.09002 * 109.46038 * 178.23946 * 27 25 24 50 50 H 1.08997 * 109.46035 * 58.27429 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6086 0.8074 5.4377 20 6 -0.2365 -0.0744 6.3590 21 1 -1.0152 -0.5675 5.7771 22 6 -0.8811 0.7912 7.4453 23 6 -1.6758 -0.1066 8.3976 24 6 -0.7414 -1.1604 8.9964 25 7 -0.1508 -1.9625 7.9174 26 6 0.6436 -3.0723 8.4608 27 6 0.6561 -1.1291 7.0169 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7011 1.1560 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5001 34 1 0.6904 -2.3002 0.9845 35 1 1.9054 1.7750 3.4681 36 1 0.3188 -0.4567 3.7177 37 1 1.7669 -0.8425 4.6781 38 1 1.4408 1.2289 6.0017 39 1 -0.0074 1.6146 5.0413 40 1 -0.1042 1.3153 8.0021 41 1 -1.5514 1.5160 6.9835 42 1 -2.1020 0.4987 9.1977 43 1 -2.4775 -0.6002 7.8483 44 1 0.0517 -0.6658 9.5572 45 1 -1.3073 -1.8102 9.6638 46 1 -0.0095 -3.7537 9.0060 47 1 1.1264 -3.6078 7.6434 48 1 1.4033 -2.6787 9.1361 49 1 1.1053 -1.7563 6.2468 50 1 1.4427 -0.6348 7.5870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424199740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:23 Heat of formation + Delta-G solvation = -111.235858 kcal Electronic energy + Delta-G solvation = -28273.842400 eV Core-core repulsion = 24461.153642 eV Total energy + Delta-G solvation = -3812.688758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.19786 -38.33180 -37.89702 -37.06703 -36.87533 -34.67993 -34.51258 -32.77710 -30.89845 -28.74357 -27.65361 -27.27381 -26.97839 -24.76620 -23.51001 -22.62106 -22.01033 -20.65201 -20.18215 -18.78778 -18.55719 -18.10568 -17.33262 -16.82982 -16.52345 -16.51040 -15.92289 -15.59216 -15.31806 -15.16654 -15.03659 -14.79497 -14.53200 -14.41548 -13.90904 -13.73084 -13.53751 -13.39708 -13.20182 -13.16064 -13.09936 -13.01632 -12.98267 -12.88576 -12.78013 -12.58344 -12.56393 -12.25008 -12.14709 -12.11152 -11.90553 -11.82809 -11.49755 -11.21453 -11.13778 -11.05626 -10.50163 -10.40944 -9.65911 -9.26025 -8.10917 -6.24310 -0.30046 1.43217 1.45238 1.52191 2.06247 2.44107 2.65571 3.01510 3.17249 3.43942 3.72191 3.89743 3.92591 4.06542 4.15326 4.20543 4.33455 4.38188 4.45653 4.55736 4.57845 4.62459 4.69293 4.69937 4.79535 4.84198 4.88973 4.95379 4.99699 5.01655 5.03354 5.04934 5.07943 5.14413 5.16870 5.20275 5.22452 5.33206 5.38273 5.56319 5.62535 5.72626 5.89333 6.07951 6.14695 6.18563 6.23157 6.32080 6.83034 7.44483 8.93010 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.002755 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.488769 B =10162.085171 C =10267.167830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.997 5.997 13 C 0.103 3.897 14 S 2.795 3.205 15 O -1.010 7.010 16 O -1.020 7.020 17 N -1.119 6.119 18 C 0.111 3.889 19 C -0.112 4.112 20 C -0.078 4.078 21 H 0.080 0.920 22 C -0.114 4.114 23 C -0.115 4.115 24 C 0.053 3.947 25 N -0.556 5.556 26 C 0.023 3.977 27 C 0.053 3.947 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.265 0.735 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.422 0.578 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.030 0.970 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.025 0.975 49 H 0.072 0.928 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -2.715 23.368 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.839 5.839 13 C -0.043 4.043 14 S 2.804 3.196 15 O -0.994 6.994 16 O -1.004 7.004 17 N -0.882 5.882 18 C -0.014 4.014 19 C -0.151 4.151 20 C -0.098 4.098 21 H 0.098 0.902 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.075 4.075 25 N -0.280 5.280 26 C -0.125 4.125 27 C -0.074 4.074 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.257 0.743 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.091 0.909 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.427 -2.981 22.955 24.024 hybrid contribution 0.825 0.395 -0.677 1.138 sum -5.603 -2.586 22.278 23.117 Atomic orbital electron populations 1.21910 0.96730 1.00260 1.00558 1.18386 0.92299 0.91282 0.81109 0.95756 1.21646 1.31627 1.13127 0.91596 0.92652 1.25627 0.95206 0.95746 1.01615 1.69967 1.37202 1.23687 1.24398 0.85672 0.78398 0.79085 0.78829 1.19108 1.20635 1.20588 1.57555 1.69973 1.21019 1.35305 1.21356 1.01724 0.80425 1.00768 1.01222 0.73661 0.72333 0.72360 1.93508 1.69927 1.61317 1.74611 1.93548 1.76011 1.57410 1.73405 1.55760 1.62257 1.18110 1.52066 1.21542 0.94692 0.93583 0.91628 1.21761 1.00153 0.98367 0.94868 1.21112 0.97472 0.95115 0.96093 0.90163 1.21620 0.99524 0.97632 0.96399 1.21579 0.97941 0.96512 0.99250 1.22163 0.97413 0.95404 0.92510 1.61937 1.35067 1.11689 1.19313 1.22394 0.96651 0.93852 0.99604 1.22267 0.94303 0.94974 0.95897 0.93802 0.94430 0.91535 0.92624 0.94144 0.90279 0.90272 0.74298 0.90987 0.90939 0.90824 0.89700 0.92050 0.90754 0.90143 0.91500 0.95200 0.90179 0.90440 0.91420 0.95645 0.90933 0.95127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 8.95 71.98 0.64 -5.34 16 2 C 0.27 13.45 2.62 44.25 0.12 13.56 16 3 H 0.02 1.37 6.91 -2.38 -0.02 1.35 16 4 C -0.54 -29.49 8.37 25.60 0.21 -29.28 16 5 H 0.06 3.01 7.65 -2.91 -0.02 2.99 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -51.43 11.31 21.45 0.24 -51.19 16 8 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 N -1.00 -40.73 3.12 -520.45 -1.62 -42.36 16 13 C 0.10 3.52 9.53 127.77 1.22 4.73 16 14 S 2.80 108.38 6.09 -56.49 -0.34 108.03 16 15 O -1.01 -41.13 16.68 -128.00 -2.14 -43.26 16 16 O -1.02 -48.59 16.70 -128.00 -2.14 -50.73 16 17 N -1.12 -30.82 6.05 -187.51 -1.14 -31.96 16 18 C 0.11 2.44 6.01 86.38 0.52 2.95 16 19 C -0.11 -1.83 4.83 30.59 0.15 -1.68 16 20 C -0.08 -1.21 2.35 -10.74 -0.03 -1.23 16 21 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 22 C -0.11 -1.47 5.29 30.68 0.16 -1.30 16 23 C -0.12 -1.40 6.09 30.65 0.19 -1.22 16 24 C 0.05 0.72 5.46 86.33 0.47 1.19 16 25 N -0.56 -9.27 4.91 -922.58 -4.53 -13.81 16 26 C 0.02 0.33 9.62 127.69 1.23 1.56 16 27 C 0.05 0.92 4.48 86.32 0.39 1.31 16 28 H 0.04 1.81 6.66 -2.38 -0.02 1.79 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 3.33 6.06 -2.39 -0.01 3.32 16 31 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 34 H 0.08 2.58 6.43 -2.39 -0.02 2.56 16 35 H 0.42 10.07 8.65 -96.74 -0.84 9.23 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.64 6.20 -2.38 -0.01 1.62 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 1.01 8.02 -2.39 -0.02 0.99 16 48 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.07 1.35 6.51 -2.39 -0.02 1.33 16 50 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -68.88 395.93 -3.85 -72.73 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.07 Total: 20.29 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.72 Total: -13.31 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -7.05 Total: -139.31 kcal Atomic # 8 Polarization: -89.72 SS G_CDS: -4.27 Total: -93.99 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 108.38 SS G_CDS: -0.34 Total: 108.03 kcal Total: -68.88 -3.85 -72.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424199740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.508 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds