Wall clock time and date at job start Tue Mar 31 2020 17:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46962 * 2 1 4 4 C 1.50703 * 109.47174 * 120.00358 * 2 1 3 5 5 H 1.07993 * 119.99762 * 119.99553 * 4 2 1 6 6 C 1.37875 * 119.99767 * 300.00160 * 4 2 1 7 7 N 1.31514 * 120.00385 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00048 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46716 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47507 * 119.99427 * 8 6 4 11 11 H 1.48502 * 109.47204 * 240.00212 * 8 6 4 12 12 N 1.46497 * 109.47017 * 240.00338 * 2 1 3 13 13 C 1.46510 * 119.99962 * 299.99956 * 12 2 1 14 14 S 1.65599 * 120.00276 * 120.00041 * 12 2 1 15 15 O 1.42102 * 106.39858 * 336.45786 * 14 12 2 16 16 O 1.42104 * 106.40356 * 203.53964 * 14 12 2 17 17 N 1.65596 * 107.22036 * 89.99710 * 14 12 2 18 18 C 1.46499 * 119.99730 * 64.99829 * 17 14 12 19 19 C 1.53008 * 109.47105 * 165.00141 * 18 17 14 20 20 C 1.52994 * 109.47079 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.53933 * 54.90354 * 20 19 18 22 22 C 1.53124 * 109.50053 * 175.00258 * 20 19 18 23 23 C 1.53126 * 109.15878 * 177.59573 * 22 20 19 24 24 C 1.53029 * 109.27795 * 302.34185 * 23 22 20 25 25 N 1.46854 * 109.52283 * 59.18140 * 24 23 22 26 26 C 1.46901 * 111.00034 * 174.15832 * 25 24 23 27 27 C 1.46843 * 111.19690 * 298.25524 * 25 24 23 28 28 H 1.08996 * 109.47395 * 299.99627 * 1 2 3 29 29 H 1.08997 * 109.47180 * 59.99777 * 1 2 3 30 30 H 1.09007 * 109.47341 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00410 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46811 * 269.99783 * 13 12 2 33 33 H 1.08994 * 109.46700 * 30.00183 * 13 12 2 34 34 H 1.09000 * 109.47028 * 150.00269 * 13 12 2 35 35 H 0.97000 * 120.00356 * 245.00770 * 17 14 12 36 36 H 1.09001 * 109.47088 * 45.00714 * 18 17 14 37 37 H 1.08995 * 109.47708 * 285.00454 * 18 17 14 38 38 H 1.09001 * 109.46680 * 60.00323 * 19 18 17 39 39 H 1.09002 * 109.46911 * 300.00382 * 19 18 17 40 40 H 1.08998 * 109.52745 * 57.68901 * 22 20 19 41 41 H 1.08999 * 109.52030 * 297.49357 * 22 20 19 42 42 H 1.08994 * 109.50285 * 62.28827 * 23 22 20 43 43 H 1.09001 * 109.50117 * 182.40406 * 23 22 20 44 44 H 1.08999 * 109.46487 * 179.19278 * 24 23 22 45 45 H 1.09001 * 109.46656 * 299.16371 * 24 23 22 46 46 H 1.09003 * 109.46765 * 63.95169 * 26 25 24 47 47 H 1.08995 * 109.46914 * 183.95324 * 26 25 24 48 48 H 1.09005 * 109.47330 * 303.95989 * 26 25 24 49 49 H 1.09001 * 109.45906 * 181.75382 * 27 25 24 50 50 H 1.08994 * 109.46526 * 301.73687 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2865 3.6036 10 1 3.1473 -0.1861 4.8160 11 1 1.1678 -1.5869 4.8164 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 16 2.9704 0.1142 -2.2863 15 8 2.6903 1.4973 -2.1192 16 8 2.8227 -0.5645 -3.5260 17 7 4.5437 -0.1041 -1.8181 18 6 5.1356 -1.4440 -1.8416 19 6 6.6577 -1.3311 -1.7336 20 6 7.2759 -2.7303 -1.7588 21 1 6.9409 -3.2609 -2.6501 22 6 8.8027 -2.6144 -1.7765 23 6 9.4137 -4.0180 -1.7410 24 6 8.9182 -4.7533 -0.4937 25 7 7.4525 -4.8387 -0.5242 26 6 6.9497 -5.6582 0.5864 27 6 6.8424 -3.5030 -0.5110 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7095 1.1616 3.4845 32 1 2.4157 -2.7377 -0.9718 33 1 0.6904 -2.3001 -0.9848 34 1 1.6237 -2.2852 -2.5003 35 1 5.0733 0.6551 -1.5282 36 1 4.8736 -1.9406 -2.7758 37 1 4.7539 -2.0247 -1.0019 38 1 6.9198 -0.8344 -0.7994 39 1 7.0394 -0.7504 -2.5734 40 1 9.1353 -2.0501 -0.9053 41 1 9.1185 -2.1025 -2.6856 42 1 9.1123 -4.5687 -2.6320 43 1 10.5006 -3.9410 -1.7103 44 1 9.3401 -5.7581 -0.4729 45 1 9.2319 -4.2093 0.3972 46 1 7.1936 -5.1760 1.5331 47 1 5.8682 -5.7630 0.5000 48 1 7.4144 -6.6436 0.5504 49 1 5.7568 -3.5998 -0.5027 50 1 7.1659 -2.9648 0.3799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424199746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:27 Heat of formation + Delta-G solvation = -89.176389 kcal Electronic energy + Delta-G solvation = -28681.605005 eV Core-core repulsion = 24869.872817 eV Total energy + Delta-G solvation = -3811.732188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.42404 -36.69961 -36.18104 -35.94540 -35.22685 -33.78649 -32.60478 -31.93201 -29.06549 -27.78621 -26.91890 -25.55406 -25.14584 -23.85487 -22.72152 -21.22856 -20.72230 -19.89265 -18.70027 -17.17311 -16.73612 -16.39950 -16.11003 -15.79213 -15.54484 -15.01010 -14.79793 -14.59029 -14.34889 -14.01474 -13.62741 -13.44343 -13.21523 -13.09942 -12.81728 -12.59333 -12.39466 -12.18801 -11.94355 -11.89558 -11.76177 -11.51407 -11.41443 -11.35962 -11.30337 -11.15488 -11.12952 -11.01762 -10.83829 -10.74269 -10.46317 -10.42878 -10.33691 -10.26632 -10.03885 -9.33093 -9.03518 -8.50081 -8.48848 -7.95228 -6.10639 -4.18743 1.29770 3.21034 3.29577 3.31177 3.53158 3.76087 4.16678 4.33606 4.49573 4.63837 4.67922 4.87982 4.99368 5.12285 5.15790 5.19925 5.23698 5.24805 5.31424 5.39918 5.46395 5.54036 5.58141 5.68031 5.72370 5.73150 5.76896 5.79991 5.85235 5.93379 5.97477 6.14304 6.20704 6.24348 6.32324 6.38889 6.65562 6.84498 6.87521 6.90506 6.93110 7.10305 7.27962 7.54429 7.64037 7.78232 8.04216 8.25784 8.84610 9.47494 10.94459 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.004305 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.024289 B = 6502.982060 C = 8352.446615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.099 3.901 14 S 2.783 3.217 15 O -0.983 6.983 16 O -1.000 7.000 17 N -1.129 6.129 18 C 0.121 3.879 19 C -0.120 4.120 20 C -0.082 4.082 21 H 0.083 0.917 22 C -0.116 4.116 23 C -0.116 4.116 24 C 0.054 3.946 25 N -0.543 5.543 26 C 0.024 3.976 27 C 0.054 3.946 28 H 0.093 0.907 29 H 0.013 0.987 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.025 0.975 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.134 -9.538 -6.225 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.833 5.833 13 C -0.048 4.048 14 S 2.792 3.208 15 O -0.967 6.967 16 O -0.984 6.984 17 N -0.887 5.887 18 C -0.006 4.006 19 C -0.160 4.160 20 C -0.102 4.102 21 H 0.101 0.899 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.074 4.074 25 N -0.268 5.268 26 C -0.124 4.124 27 C -0.073 4.073 28 H 0.111 0.889 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.244 0.756 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.499 -9.327 -7.349 17.978 hybrid contribution 0.876 0.003 2.374 2.531 sum 14.375 -9.324 -4.975 17.841 Atomic orbital electron populations 1.22068 0.98070 0.99607 1.00825 1.18719 0.91811 0.92725 0.80260 0.92380 1.21404 1.31643 1.12947 0.90130 0.91976 1.24924 0.95032 0.94987 0.98959 1.69888 1.36377 1.22632 1.23643 0.86502 0.78630 0.79550 0.83012 1.19894 1.21067 1.20986 1.57654 1.64558 1.21365 1.39687 1.21275 1.01810 0.81821 0.99858 1.01723 0.72658 0.73073 0.73337 1.93591 1.83701 1.32540 1.86904 1.93524 1.86092 1.76412 1.42332 1.56002 1.32320 1.14984 1.85426 1.21253 0.93880 0.83528 1.01908 1.21803 0.94320 0.96838 1.02991 1.21156 0.95043 0.95023 0.98957 0.89863 1.21636 0.94960 0.96790 1.01999 1.21575 0.99395 0.96003 0.98442 1.22104 0.87934 1.00168 0.97232 1.61921 1.05996 1.14324 1.44527 1.22361 1.01336 0.97290 0.91429 1.22276 1.00002 0.88111 0.96944 0.88887 0.96814 0.94818 0.92726 0.93994 0.90663 0.92039 0.75573 0.90852 0.91542 0.91121 0.90936 0.92183 0.91612 0.91042 0.91685 0.91031 0.95090 0.95682 0.90990 0.91551 0.89947 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.95 37.16 0.33 -3.13 16 2 C 0.27 6.49 2.62 -69.08 -0.18 6.31 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.23 8.37 -34.44 -0.29 -13.51 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.99 -20.31 3.12 -115.85 -0.36 -20.67 16 13 C 0.10 1.74 9.90 59.85 0.59 2.33 16 14 S 2.78 54.27 6.14 -107.50 -0.66 53.61 16 15 O -0.98 -22.44 16.70 -57.17 -0.95 -23.40 16 16 O -1.00 -20.37 16.21 -57.17 -0.93 -21.30 16 17 N -1.13 -17.57 6.05 -10.61 -0.06 -17.64 16 18 C 0.12 1.61 6.01 -4.04 -0.02 1.58 16 19 C -0.12 -1.28 4.83 -26.73 -0.13 -1.41 16 20 C -0.08 -0.82 2.35 -90.54 -0.21 -1.03 16 21 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.12 -1.00 5.29 -26.60 -0.14 -1.14 16 23 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 24 C 0.05 0.48 5.46 -3.83 -0.02 0.46 16 25 N -0.54 -5.74 4.91 -242.96 -1.19 -6.94 16 26 C 0.02 0.23 9.59 60.07 0.58 0.81 16 27 C 0.05 0.60 4.48 -3.83 -0.02 0.59 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 34 H 0.06 0.99 7.02 -51.93 -0.36 0.63 16 35 H 0.41 5.75 8.65 -34.47 -0.30 5.45 16 36 H 0.07 0.97 7.75 -51.93 -0.40 0.56 16 37 H 0.07 0.92 6.59 -51.93 -0.34 0.57 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 45 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 49 H 0.08 0.97 6.60 -51.93 -0.34 0.63 16 50 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -30.87 395.24 -11.35 -42.22 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.98 Total: 4.26 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 0.23 Total: -7.69 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -0.99 Total: -68.87 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.88 Total: -44.69 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 54.27 SS G_CDS: -0.66 Total: 53.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.87 -11.35 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424199746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.957 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds