Wall clock time and date at job start Tue Mar 31 2020 17:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46962 * 2 1 4 4 C 1.50703 * 109.47174 * 120.00358 * 2 1 3 5 5 H 1.07993 * 119.99762 * 119.99553 * 4 2 1 6 6 C 1.37875 * 119.99767 * 300.00160 * 4 2 1 7 7 N 1.31514 * 120.00385 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00048 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46716 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47507 * 119.99427 * 8 6 4 11 11 H 1.48502 * 109.47204 * 240.00212 * 8 6 4 12 12 N 1.46497 * 109.47017 * 240.00338 * 2 1 3 13 13 C 1.46510 * 119.99962 * 299.99956 * 12 2 1 14 14 S 1.65599 * 120.00276 * 120.00041 * 12 2 1 15 15 O 1.42102 * 106.39858 * 336.45786 * 14 12 2 16 16 O 1.42104 * 106.40356 * 203.53964 * 14 12 2 17 17 N 1.65596 * 107.22036 * 89.99710 * 14 12 2 18 18 C 1.46499 * 119.99730 * 64.99829 * 17 14 12 19 19 C 1.53008 * 109.47105 * 165.00141 * 18 17 14 20 20 C 1.52994 * 109.47079 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.53933 * 54.90354 * 20 19 18 22 22 C 1.53124 * 109.50053 * 175.00258 * 20 19 18 23 23 C 1.53126 * 109.15878 * 177.59573 * 22 20 19 24 24 C 1.53029 * 109.27795 * 302.34185 * 23 22 20 25 25 N 1.46854 * 109.52283 * 59.18140 * 24 23 22 26 26 C 1.46901 * 111.00034 * 174.15832 * 25 24 23 27 27 C 1.46843 * 111.19690 * 298.25524 * 25 24 23 28 28 H 1.08996 * 109.47395 * 299.99627 * 1 2 3 29 29 H 1.08997 * 109.47180 * 59.99777 * 1 2 3 30 30 H 1.09007 * 109.47341 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00410 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46811 * 269.99783 * 13 12 2 33 33 H 1.08994 * 109.46700 * 30.00183 * 13 12 2 34 34 H 1.09000 * 109.47028 * 150.00269 * 13 12 2 35 35 H 0.97000 * 120.00356 * 245.00770 * 17 14 12 36 36 H 1.09001 * 109.47088 * 45.00714 * 18 17 14 37 37 H 1.08995 * 109.47708 * 285.00454 * 18 17 14 38 38 H 1.09001 * 109.46680 * 60.00323 * 19 18 17 39 39 H 1.09002 * 109.46911 * 300.00382 * 19 18 17 40 40 H 1.08998 * 109.52745 * 57.68901 * 22 20 19 41 41 H 1.08999 * 109.52030 * 297.49357 * 22 20 19 42 42 H 1.08994 * 109.50285 * 62.28827 * 23 22 20 43 43 H 1.09001 * 109.50117 * 182.40406 * 23 22 20 44 44 H 1.08999 * 109.46487 * 179.19278 * 24 23 22 45 45 H 1.09001 * 109.46656 * 299.16371 * 24 23 22 46 46 H 1.09003 * 109.46765 * 63.95169 * 26 25 24 47 47 H 1.08995 * 109.46914 * 183.95324 * 26 25 24 48 48 H 1.09005 * 109.47330 * 303.95989 * 26 25 24 49 49 H 1.09001 * 109.45906 * 181.75382 * 27 25 24 50 50 H 1.08994 * 109.46526 * 301.73687 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2865 3.6036 10 1 3.1473 -0.1861 4.8160 11 1 1.1678 -1.5869 4.8164 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 16 2.9704 0.1142 -2.2863 15 8 2.6903 1.4973 -2.1192 16 8 2.8227 -0.5645 -3.5260 17 7 4.5437 -0.1041 -1.8181 18 6 5.1356 -1.4440 -1.8416 19 6 6.6577 -1.3311 -1.7336 20 6 7.2759 -2.7303 -1.7588 21 1 6.9409 -3.2609 -2.6501 22 6 8.8027 -2.6144 -1.7765 23 6 9.4137 -4.0180 -1.7410 24 6 8.9182 -4.7533 -0.4937 25 7 7.4525 -4.8387 -0.5242 26 6 6.9497 -5.6582 0.5864 27 6 6.8424 -3.5030 -0.5110 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7095 1.1616 3.4845 32 1 2.4157 -2.7377 -0.9718 33 1 0.6904 -2.3001 -0.9848 34 1 1.6237 -2.2852 -2.5003 35 1 5.0733 0.6551 -1.5282 36 1 4.8736 -1.9406 -2.7758 37 1 4.7539 -2.0247 -1.0019 38 1 6.9198 -0.8344 -0.7994 39 1 7.0394 -0.7504 -2.5734 40 1 9.1353 -2.0501 -0.9053 41 1 9.1185 -2.1025 -2.6856 42 1 9.1123 -4.5687 -2.6320 43 1 10.5006 -3.9410 -1.7103 44 1 9.3401 -5.7581 -0.4729 45 1 9.2319 -4.2093 0.3972 46 1 7.1936 -5.1760 1.5331 47 1 5.8682 -5.7630 0.5000 48 1 7.4144 -6.6436 0.5504 49 1 5.7568 -3.5998 -0.5027 50 1 7.1659 -2.9648 0.3799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424199746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:26 Heat of formation + Delta-G solvation = -111.180458 kcal Electronic energy + Delta-G solvation = -28682.559173 eV Core-core repulsion = 24869.872817 eV Total energy + Delta-G solvation = -3812.686356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.20276 -38.33626 -37.89312 -37.04954 -36.89254 -34.67201 -34.50248 -32.77437 -30.90435 -28.74303 -27.67049 -27.29469 -26.95607 -24.75860 -23.51454 -22.61096 -22.03212 -20.70681 -20.16733 -18.76475 -18.32421 -18.24765 -17.40163 -16.81630 -16.58585 -16.49720 -15.90380 -15.59433 -15.34530 -15.18250 -14.99884 -14.71347 -14.62270 -14.41778 -13.93888 -13.67745 -13.54294 -13.45086 -13.22612 -13.18659 -13.14706 -12.99958 -12.93623 -12.92847 -12.76459 -12.61163 -12.44355 -12.23622 -12.16498 -12.13791 -11.89743 -11.82366 -11.50946 -11.22339 -11.15728 -11.13417 -10.50479 -10.33606 -9.64159 -9.28711 -8.08741 -6.23127 -0.25907 1.42586 1.45625 1.55038 2.03146 2.45063 2.63738 3.00040 3.19799 3.44501 3.74012 3.88441 3.90938 4.10771 4.16119 4.20006 4.35511 4.38289 4.46062 4.54079 4.56735 4.62627 4.69943 4.74393 4.77541 4.82975 4.87574 4.95064 4.96696 4.99679 5.01896 5.03147 5.10312 5.15029 5.17134 5.18730 5.20672 5.32977 5.37671 5.55404 5.62061 5.71820 5.86400 6.07107 6.11880 6.17215 6.21188 6.30741 6.86458 7.46506 8.96011 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.004305 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.024289 B = 6502.982060 C = 8352.446615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.524 4.524 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.997 5.997 13 C 0.094 3.906 14 S 2.798 3.202 15 O -1.020 7.020 16 O -1.007 7.007 17 N -1.119 6.119 18 C 0.115 3.885 19 C -0.112 4.112 20 C -0.077 4.077 21 H 0.082 0.918 22 C -0.114 4.114 23 C -0.113 4.113 24 C 0.051 3.949 25 N -0.552 5.552 26 C 0.023 3.977 27 C 0.054 3.946 28 H 0.069 0.931 29 H 0.019 0.981 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.026 0.974 46 H 0.020 0.980 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.936 -11.207 -6.494 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.563 4.563 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.209 1.209 12 N -0.838 5.838 13 C -0.052 4.052 14 S 2.807 3.193 15 O -1.005 7.005 16 O -0.991 6.991 17 N -0.881 5.881 18 C -0.011 4.011 19 C -0.152 4.152 20 C -0.096 4.096 21 H 0.100 0.900 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.077 4.077 25 N -0.277 5.277 26 C -0.125 4.125 27 C -0.074 4.074 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 15.304 -11.016 -7.635 20.343 hybrid contribution 0.346 0.489 2.408 2.481 sum 15.649 -10.526 -5.228 19.571 Atomic orbital electron populations 1.21961 0.97973 1.00129 0.99987 1.18388 0.91910 0.91369 0.81463 0.95762 1.21636 1.31253 1.12872 0.90558 0.91368 1.25665 0.95295 0.95619 1.01759 1.70022 1.37589 1.24021 1.24161 0.85540 0.78041 0.78655 0.79536 1.18749 1.21273 1.20935 1.57545 1.65381 1.22446 1.38459 1.21467 1.02270 0.80390 1.01070 1.01116 0.73220 0.71932 0.73040 1.93538 1.84695 1.34911 1.87314 1.93510 1.86606 1.76325 1.42642 1.55697 1.30849 1.16458 1.85116 1.21470 0.95640 0.82014 1.01966 1.21762 0.92218 0.97620 1.03582 1.21106 0.96103 0.94167 0.98249 0.89992 1.21629 0.93691 0.97342 1.02525 1.21570 1.00362 0.95369 0.97781 1.22192 0.86981 1.00952 0.97559 1.61961 1.06989 1.13914 1.44811 1.22390 1.01198 0.97891 0.91020 1.22245 0.99408 0.88639 0.97093 0.91184 0.96188 0.93533 0.92817 0.92398 0.90789 0.90496 0.74535 0.90457 0.91970 0.91085 0.89639 0.92309 0.90461 0.91230 0.90013 0.89968 0.95522 0.96186 0.91504 0.90111 0.91097 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.74 8.95 71.98 0.64 -6.10 16 2 C 0.27 13.34 2.62 44.25 0.12 13.45 16 3 H 0.02 1.36 6.91 -2.39 -0.02 1.34 16 4 C -0.52 -26.36 8.37 25.60 0.21 -26.14 16 5 H 0.07 3.28 7.65 -2.91 -0.02 3.26 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -50.85 11.32 21.45 0.24 -50.61 16 8 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 N -1.00 -40.39 3.12 -520.43 -1.62 -42.02 16 13 C 0.09 3.15 9.90 127.77 1.27 4.42 16 14 S 2.80 107.99 6.14 -56.49 -0.35 107.64 16 15 O -1.02 -47.20 16.70 -128.00 -2.14 -49.34 16 16 O -1.01 -39.90 16.21 -128.00 -2.08 -41.98 16 17 N -1.12 -33.77 6.05 -187.48 -1.14 -34.91 16 18 C 0.11 2.88 6.01 86.38 0.52 3.40 16 19 C -0.11 -2.18 4.83 30.59 0.15 -2.03 16 20 C -0.08 -1.38 2.35 -10.74 -0.03 -1.41 16 21 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 22 C -0.11 -1.70 5.29 30.68 0.16 -1.54 16 23 C -0.11 -1.56 6.09 30.65 0.19 -1.37 16 24 C 0.05 0.82 5.46 86.32 0.47 1.29 16 25 N -0.55 -10.84 4.91 -922.59 -4.53 -15.37 16 26 C 0.02 0.42 9.59 127.69 1.22 1.64 16 27 C 0.05 1.13 4.48 86.33 0.39 1.52 16 28 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 2.04 6.66 -2.38 -0.02 2.03 16 31 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 2.50 6.43 -2.39 -0.02 2.48 16 34 H 0.08 2.35 7.02 -2.39 -0.02 2.33 16 35 H 0.42 11.36 8.65 -96.75 -0.84 10.52 16 36 H 0.08 1.90 7.75 -2.39 -0.02 1.88 16 37 H 0.06 1.63 6.59 -2.39 -0.02 1.62 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 45 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.08 1.20 8.10 -2.38 -0.02 1.18 16 49 H 0.07 1.62 6.60 -2.39 -0.02 1.60 16 50 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -65.02 395.24 -3.75 -68.77 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.07 Total: 26.21 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.76 Total: -11.57 kcal Atomic # 7 Polarization: -135.85 SS G_CDS: -7.05 Total: -142.90 kcal Atomic # 8 Polarization: -87.11 SS G_CDS: -4.21 Total: -91.32 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 107.99 SS G_CDS: -0.35 Total: 107.64 kcal Total: -65.02 -3.75 -68.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424199746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.414 kcal (2) G-P(sol) polarization free energy of solvation -65.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds