Wall clock time and date at job start Tue Mar 31 2020 17:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47070 * 2 1 4 4 C 1.50699 * 109.46983 * 119.99616 * 2 1 3 5 5 H 1.07999 * 119.99688 * 120.00170 * 4 2 1 6 6 C 1.37878 * 120.00403 * 300.00225 * 4 2 1 7 7 N 1.31514 * 119.99416 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47206 * 89.99952 * 8 6 4 10 10 H 1.48499 * 109.47214 * 210.00116 * 8 6 4 11 11 H 1.48504 * 109.47359 * 329.99961 * 8 6 4 12 12 N 1.46498 * 109.47169 * 239.99983 * 2 1 3 13 13 C 1.46496 * 120.00390 * 299.99806 * 12 2 1 14 14 S 1.65608 * 120.00001 * 120.00040 * 12 2 1 15 15 O 1.42100 * 106.40056 * 336.45913 * 14 12 2 16 16 O 1.42098 * 106.40259 * 203.53790 * 14 12 2 17 17 N 1.65599 * 107.21495 * 89.99609 * 14 12 2 18 18 C 1.46498 * 119.99850 * 65.00668 * 17 14 12 19 19 C 1.53001 * 109.47187 * 164.99386 * 18 17 14 20 20 C 1.52996 * 109.47227 * 179.97438 * 19 18 17 21 21 H 1.09005 * 109.50879 * 305.07691 * 20 19 18 22 22 C 1.53125 * 109.50668 * 185.00312 * 20 19 18 23 23 C 1.53114 * 109.16368 * 182.36739 * 22 20 19 24 24 C 1.53037 * 109.31211 * 57.63311 * 23 22 20 25 25 N 1.46854 * 109.52285 * 300.88400 * 24 23 22 26 26 C 1.46895 * 110.99648 * 185.80147 * 25 24 23 27 27 C 1.46840 * 111.23238 * 61.67711 * 25 24 23 28 28 H 1.08993 * 109.47391 * 300.00120 * 1 2 3 29 29 H 1.09004 * 109.46706 * 60.00289 * 1 2 3 30 30 H 1.08997 * 109.46676 * 179.97438 * 1 2 3 31 31 H 0.97007 * 119.99501 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47076 * 270.00658 * 13 12 2 33 33 H 1.09007 * 109.46555 * 29.99805 * 13 12 2 34 34 H 1.08993 * 109.47263 * 150.00125 * 13 12 2 35 35 H 0.96996 * 120.00320 * 244.99602 * 17 14 12 36 36 H 1.09000 * 109.47657 * 44.99752 * 18 17 14 37 37 H 1.09000 * 109.46854 * 284.99252 * 18 17 14 38 38 H 1.09004 * 109.47015 * 59.99680 * 19 18 17 39 39 H 1.09000 * 109.47114 * 299.99707 * 19 18 17 40 40 H 1.08998 * 109.52257 * 62.45932 * 22 20 19 41 41 H 1.09007 * 109.51539 * 302.27448 * 22 20 19 42 42 H 1.09002 * 109.50377 * 177.59436 * 23 22 20 43 43 H 1.09003 * 109.50316 * 297.67431 * 23 22 20 44 44 H 1.09000 * 109.46159 * 60.85546 * 24 23 22 45 45 H 1.09000 * 109.46461 * 180.82902 * 24 23 22 46 46 H 1.08999 * 109.47502 * 295.74346 * 26 25 24 47 47 H 1.08996 * 109.47397 * 55.74738 * 26 25 24 48 48 H 1.09003 * 109.47015 * 175.74892 * 26 25 24 49 49 H 1.09001 * 109.46294 * 178.26219 * 27 25 24 50 50 H 1.09005 * 109.46534 * 58.30014 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7120 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2863 15 8 2.6904 1.4973 -2.1193 16 8 2.8229 -0.5645 -3.5259 17 7 4.5438 -0.1041 -1.8179 18 6 5.1358 -1.4440 -1.8414 19 6 6.6578 -1.3310 -1.7334 20 6 7.2760 -2.7303 -1.7574 21 1 6.8279 -3.3397 -0.9725 22 6 8.7859 -2.6263 -1.5243 23 6 9.4050 -4.0241 -1.6086 24 6 9.0858 -4.6375 -2.9739 25 7 7.6298 -4.7151 -3.1487 26 6 7.2856 -5.4240 -4.3884 27 6 7.0186 -3.3803 -3.1187 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 0.7086 1.1613 3.4844 32 1 2.4158 -2.7376 -0.9716 33 1 0.6905 -2.3002 -0.9846 34 1 1.6240 -2.2852 -2.5002 35 1 5.0734 0.6550 -1.5281 36 1 4.8738 -1.9407 -2.7757 37 1 4.7541 -2.0246 -1.0017 38 1 6.9199 -0.8343 -0.7992 39 1 7.0395 -0.7503 -2.5732 40 1 8.9738 -2.2035 -0.5374 41 1 9.2287 -1.9851 -2.2866 42 1 10.4856 -3.9515 -1.4859 43 1 8.9908 -4.6537 -0.8211 44 1 9.5127 -4.0151 -3.7604 45 1 9.5129 -5.6387 -3.0311 46 1 7.6470 -4.8549 -5.2448 47 1 7.7510 -6.4096 -4.3846 48 1 6.2032 -5.5336 -4.4557 49 1 5.9445 -3.4689 -3.2815 50 1 7.4551 -2.7632 -3.9041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424199751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:30 Heat of formation + Delta-G solvation = -88.946386 kcal Electronic energy + Delta-G solvation = -28474.368498 eV Core-core repulsion = 24662.646283 eV Total energy + Delta-G solvation = -3811.722214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.46092 -36.70493 -36.17549 -35.95653 -35.23146 -33.81414 -32.58713 -31.95369 -29.05333 -27.81156 -26.97555 -25.54479 -25.12565 -23.88121 -22.76499 -21.23944 -20.71313 -19.89752 -18.72445 -17.19051 -16.73004 -16.39252 -16.13769 -15.74915 -15.60385 -14.99733 -14.84575 -14.61702 -14.33352 -14.07026 -13.66111 -13.44398 -13.23824 -13.09732 -12.79858 -12.55323 -12.43487 -12.18423 -12.09044 -11.89845 -11.75093 -11.52946 -11.41758 -11.36887 -11.32954 -11.15323 -11.13059 -10.99325 -10.83330 -10.75199 -10.48651 -10.43183 -10.29171 -10.23634 -10.01311 -9.33277 -9.04970 -8.54390 -8.47406 -7.94304 -6.08459 -4.16701 1.29736 3.24942 3.32441 3.34242 3.53054 3.70465 4.16364 4.36441 4.47801 4.61432 4.66062 4.85080 4.98697 5.07905 5.14946 5.17728 5.22066 5.22904 5.24726 5.34927 5.41110 5.50116 5.54175 5.65239 5.67542 5.69875 5.72821 5.79639 5.87547 5.90654 6.00640 6.12528 6.18535 6.27158 6.31956 6.38996 6.66755 6.85130 6.85638 6.87324 6.88438 7.11351 7.28313 7.55241 7.65482 7.79748 8.05734 8.27541 8.86618 9.49680 10.96621 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.003640 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.548212 B = 7691.197919 C = 8972.643472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.099 3.901 14 S 2.783 3.217 15 O -0.983 6.983 16 O -1.001 7.001 17 N -1.129 6.129 18 C 0.121 3.879 19 C -0.120 4.120 20 C -0.084 4.084 21 H 0.085 0.915 22 C -0.116 4.116 23 C -0.117 4.117 24 C 0.055 3.945 25 N -0.544 5.544 26 C 0.025 3.975 27 C 0.056 3.944 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.412 0.588 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.072 0.928 46 H 0.023 0.977 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.403 -9.400 -9.639 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.048 4.048 14 S 2.792 3.208 15 O -0.967 6.967 16 O -0.985 6.985 17 N -0.887 5.887 18 C -0.006 4.006 19 C -0.159 4.159 20 C -0.103 4.103 21 H 0.104 0.896 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.073 4.073 25 N -0.268 5.268 26 C -0.124 4.124 27 C -0.072 4.072 28 H 0.111 0.889 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.707 -9.228 -9.953 19.290 hybrid contribution 0.997 0.077 0.766 1.260 sum 14.704 -9.151 -9.187 19.604 Atomic orbital electron populations 1.22069 0.98079 0.99606 1.00812 1.18716 0.91802 0.92705 0.80255 0.92403 1.21383 1.31726 1.13025 0.90145 0.91955 1.24928 0.94984 0.95000 0.98999 1.69885 1.36275 1.22714 1.23763 0.86533 0.78554 0.79968 0.82517 1.20710 1.21228 1.19909 1.57647 1.64539 1.21365 1.39689 1.21277 1.01880 0.81841 0.99794 1.01714 0.72660 0.73072 0.73335 1.93591 1.83698 1.32544 1.86906 1.93519 1.86112 1.76432 1.42388 1.56002 1.32328 1.14984 1.85427 1.21251 0.93875 0.83555 1.01886 1.21799 0.94291 0.96800 1.03031 1.21167 0.95647 0.95717 0.97785 0.89634 1.21631 0.95003 0.96781 1.01947 1.21584 1.00009 0.96641 0.97287 1.22101 0.87874 1.00346 0.96987 1.61882 1.10133 1.18647 1.36148 1.22355 1.02019 0.98309 0.89672 1.22266 1.00030 0.88239 0.96662 0.88863 0.96850 0.94812 0.92680 0.93895 0.90656 0.92105 0.75561 0.91020 0.91376 0.90621 0.91431 0.91449 0.92292 0.91644 0.90941 0.95162 0.90989 0.95813 0.91504 0.91062 0.90077 0.94814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 2 C 0.27 6.54 2.62 -69.08 -0.18 6.36 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.38 8.37 -34.44 -0.29 -13.67 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.99 -20.39 3.12 -115.85 -0.36 -20.75 16 13 C 0.10 1.74 9.90 59.84 0.59 2.33 16 14 S 2.78 54.27 6.14 -107.50 -0.66 53.61 16 15 O -0.98 -22.47 16.70 -57.17 -0.95 -23.42 16 16 O -1.00 -20.27 16.21 -57.17 -0.93 -21.20 16 17 N -1.13 -17.59 6.05 -10.61 -0.06 -17.65 16 18 C 0.12 1.61 6.01 -4.04 -0.02 1.58 16 19 C -0.12 -1.27 4.83 -26.73 -0.13 -1.40 16 20 C -0.08 -0.83 2.35 -90.54 -0.21 -1.04 16 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.12 -1.01 5.29 -26.61 -0.14 -1.15 16 23 C -0.12 -0.95 6.09 -26.65 -0.16 -1.12 16 24 C 0.05 0.47 5.47 -3.83 -0.02 0.44 16 25 N -0.54 -5.36 4.91 -242.97 -1.19 -6.55 16 26 C 0.02 0.21 9.59 60.06 0.58 0.78 16 27 C 0.06 0.57 4.49 -3.84 -0.02 0.55 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 34 H 0.06 0.98 7.02 -51.93 -0.36 0.62 16 35 H 0.41 5.76 8.65 -34.47 -0.30 5.46 16 36 H 0.07 0.94 6.20 -51.93 -0.32 0.62 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 46 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.87 6.60 -51.93 -0.34 0.52 16 50 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -31.05 395.23 -11.34 -42.39 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.98 Total: 3.95 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 0.23 Total: -7.90 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.99 Total: -68.74 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.88 Total: -44.62 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 54.27 SS G_CDS: -0.66 Total: 53.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.05 -11.34 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424199751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.557 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds