Wall clock time and date at job start Tue Mar 31 2020 17:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47070 * 2 1 4 4 C 1.50699 * 109.46983 * 119.99616 * 2 1 3 5 5 H 1.07999 * 119.99688 * 120.00170 * 4 2 1 6 6 C 1.37878 * 120.00403 * 300.00225 * 4 2 1 7 7 N 1.31514 * 119.99416 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47206 * 89.99952 * 8 6 4 10 10 H 1.48499 * 109.47214 * 210.00116 * 8 6 4 11 11 H 1.48504 * 109.47359 * 329.99961 * 8 6 4 12 12 N 1.46498 * 109.47169 * 239.99983 * 2 1 3 13 13 C 1.46496 * 120.00390 * 299.99806 * 12 2 1 14 14 S 1.65608 * 120.00001 * 120.00040 * 12 2 1 15 15 O 1.42100 * 106.40056 * 336.45913 * 14 12 2 16 16 O 1.42098 * 106.40259 * 203.53790 * 14 12 2 17 17 N 1.65599 * 107.21495 * 89.99609 * 14 12 2 18 18 C 1.46498 * 119.99850 * 65.00668 * 17 14 12 19 19 C 1.53001 * 109.47187 * 164.99386 * 18 17 14 20 20 C 1.52996 * 109.47227 * 179.97438 * 19 18 17 21 21 H 1.09005 * 109.50879 * 305.07691 * 20 19 18 22 22 C 1.53125 * 109.50668 * 185.00312 * 20 19 18 23 23 C 1.53114 * 109.16368 * 182.36739 * 22 20 19 24 24 C 1.53037 * 109.31211 * 57.63311 * 23 22 20 25 25 N 1.46854 * 109.52285 * 300.88400 * 24 23 22 26 26 C 1.46895 * 110.99648 * 185.80147 * 25 24 23 27 27 C 1.46840 * 111.23238 * 61.67711 * 25 24 23 28 28 H 1.08993 * 109.47391 * 300.00120 * 1 2 3 29 29 H 1.09004 * 109.46706 * 60.00289 * 1 2 3 30 30 H 1.08997 * 109.46676 * 179.97438 * 1 2 3 31 31 H 0.97007 * 119.99501 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47076 * 270.00658 * 13 12 2 33 33 H 1.09007 * 109.46555 * 29.99805 * 13 12 2 34 34 H 1.08993 * 109.47263 * 150.00125 * 13 12 2 35 35 H 0.96996 * 120.00320 * 244.99602 * 17 14 12 36 36 H 1.09000 * 109.47657 * 44.99752 * 18 17 14 37 37 H 1.09000 * 109.46854 * 284.99252 * 18 17 14 38 38 H 1.09004 * 109.47015 * 59.99680 * 19 18 17 39 39 H 1.09000 * 109.47114 * 299.99707 * 19 18 17 40 40 H 1.08998 * 109.52257 * 62.45932 * 22 20 19 41 41 H 1.09007 * 109.51539 * 302.27448 * 22 20 19 42 42 H 1.09002 * 109.50377 * 177.59436 * 23 22 20 43 43 H 1.09003 * 109.50316 * 297.67431 * 23 22 20 44 44 H 1.09000 * 109.46159 * 60.85546 * 24 23 22 45 45 H 1.09000 * 109.46461 * 180.82902 * 24 23 22 46 46 H 1.08999 * 109.47502 * 295.74346 * 26 25 24 47 47 H 1.08996 * 109.47397 * 55.74738 * 26 25 24 48 48 H 1.09003 * 109.47015 * 175.74892 * 26 25 24 49 49 H 1.09001 * 109.46294 * 178.26219 * 27 25 24 50 50 H 1.09005 * 109.46534 * 58.30014 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7120 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2863 15 8 2.6904 1.4973 -2.1193 16 8 2.8229 -0.5645 -3.5259 17 7 4.5438 -0.1041 -1.8179 18 6 5.1358 -1.4440 -1.8414 19 6 6.6578 -1.3310 -1.7334 20 6 7.2760 -2.7303 -1.7574 21 1 6.8279 -3.3397 -0.9725 22 6 8.7859 -2.6263 -1.5243 23 6 9.4050 -4.0241 -1.6086 24 6 9.0858 -4.6375 -2.9739 25 7 7.6298 -4.7151 -3.1487 26 6 7.2856 -5.4240 -4.3884 27 6 7.0186 -3.3803 -3.1187 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 0.7086 1.1613 3.4844 32 1 2.4158 -2.7376 -0.9716 33 1 0.6905 -2.3002 -0.9846 34 1 1.6240 -2.2852 -2.5002 35 1 5.0734 0.6550 -1.5281 36 1 4.8738 -1.9407 -2.7757 37 1 4.7541 -2.0246 -1.0017 38 1 6.9199 -0.8343 -0.7992 39 1 7.0395 -0.7503 -2.5732 40 1 8.9738 -2.2035 -0.5374 41 1 9.2287 -1.9851 -2.2866 42 1 10.4856 -3.9515 -1.4859 43 1 8.9908 -4.6537 -0.8211 44 1 9.5127 -4.0151 -3.7604 45 1 9.5129 -5.6387 -3.0311 46 1 7.6470 -4.8549 -5.2448 47 1 7.7510 -6.4096 -4.3846 48 1 6.2032 -5.5336 -4.4557 49 1 5.9445 -3.4689 -3.2815 50 1 7.4551 -2.7632 -3.9041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424199751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:29 Heat of formation + Delta-G solvation = -111.073412 kcal Electronic energy + Delta-G solvation = -28475.327998 eV Core-core repulsion = 24662.646283 eV Total energy + Delta-G solvation = -3812.681714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.20118 -38.33970 -37.88808 -37.05034 -36.89723 -34.67127 -34.49199 -32.77652 -30.89888 -28.74291 -27.65503 -27.28601 -26.94776 -24.76218 -23.51318 -22.60493 -22.02969 -20.66757 -20.20680 -18.77848 -18.32044 -18.24597 -17.39263 -16.81426 -16.53817 -16.50441 -15.89714 -15.59837 -15.32956 -15.15340 -15.02721 -14.75368 -14.61268 -14.41097 -13.90485 -13.66431 -13.54079 -13.45040 -13.21986 -13.17243 -13.11199 -13.00892 -12.89933 -12.89179 -12.76284 -12.62119 -12.55569 -12.23386 -12.13298 -12.11046 -11.90237 -11.81928 -11.50859 -11.22952 -11.18247 -11.03671 -10.48190 -10.37625 -9.63828 -9.25608 -8.07269 -6.22014 -0.26102 1.46591 1.48548 1.57565 2.03062 2.47514 2.63424 3.01232 3.21295 3.44377 3.72005 3.89353 3.91941 4.10770 4.15011 4.21801 4.33982 4.37903 4.45073 4.55955 4.58535 4.61720 4.69181 4.74355 4.78758 4.84088 4.88026 4.95357 4.97117 4.98867 5.03139 5.03951 5.08269 5.14818 5.18132 5.18636 5.22649 5.32710 5.37589 5.55109 5.62898 5.72296 5.87074 6.07705 6.14674 6.18522 6.21581 6.31700 6.87555 7.47887 8.97326 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.003640 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.548212 B = 7691.197919 C = 8972.643472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.527 4.527 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.997 5.997 13 C 0.093 3.907 14 S 2.798 3.202 15 O -1.020 7.020 16 O -1.008 7.008 17 N -1.119 6.119 18 C 0.115 3.885 19 C -0.112 4.112 20 C -0.079 4.079 21 H 0.075 0.925 22 C -0.114 4.114 23 C -0.115 4.115 24 C 0.053 3.947 25 N -0.558 5.558 26 C 0.024 3.976 27 C 0.056 3.944 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.031 0.969 45 H 0.081 0.919 46 H 0.025 0.975 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.147 -11.046 -9.668 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.566 4.566 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.838 5.838 13 C -0.052 4.052 14 S 2.807 3.193 15 O -1.005 7.005 16 O -0.991 6.991 17 N -0.881 5.881 18 C -0.011 4.011 19 C -0.151 4.151 20 C -0.099 4.099 21 H 0.094 0.906 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.074 4.074 25 N -0.282 5.282 26 C -0.124 4.124 27 C -0.072 4.072 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.255 0.745 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.050 0.950 45 H 0.099 0.901 46 H 0.044 0.956 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 15.453 -10.894 -10.001 21.389 hybrid contribution 0.486 0.558 0.703 1.021 sum 15.940 -10.335 -9.298 21.151 Atomic orbital electron populations 1.21962 0.97987 1.00122 0.99979 1.18383 0.91902 0.91347 0.81464 0.95794 1.21630 1.31394 1.12995 0.90605 0.91309 1.25687 0.95223 0.95628 1.01850 1.70024 1.37494 1.24116 1.24262 0.85554 0.77811 0.79264 0.78949 1.20420 1.21442 1.18884 1.57539 1.65374 1.22441 1.38463 1.21468 1.02304 0.80409 1.01037 1.01112 0.73220 0.71931 0.73044 1.93538 1.84695 1.34921 1.87318 1.93505 1.86614 1.76327 1.42656 1.55698 1.30853 1.16461 1.85122 1.21465 0.95622 0.82032 1.01940 1.21752 0.92177 0.97575 1.03636 1.21109 0.96550 0.94852 0.97364 0.90620 1.21618 0.93888 0.97349 1.02311 1.21578 1.00916 0.95987 0.96807 1.22160 0.87084 1.01008 0.97167 1.61904 1.11034 1.18370 1.36897 1.22388 1.01990 0.98782 0.89264 1.22227 0.99583 0.88677 0.96696 0.91161 0.96213 0.93537 0.92801 0.92335 0.90815 0.90513 0.74521 0.90678 0.91767 0.90223 0.90539 0.91073 0.91825 0.90056 0.91718 0.95050 0.90051 0.95630 0.90375 0.91367 0.90959 0.94881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.77 8.95 71.98 0.64 -6.12 16 2 C 0.27 13.41 2.62 44.25 0.12 13.53 16 3 H 0.02 1.35 6.91 -2.38 -0.02 1.33 16 4 C -0.53 -26.67 8.37 25.60 0.21 -26.46 16 5 H 0.07 3.32 7.65 -2.91 -0.02 3.30 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -51.12 11.32 21.45 0.24 -50.87 16 8 Si 0.96 41.25 29.54 68.60 2.03 43.28 16 9 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 12 N -1.00 -40.53 3.12 -520.45 -1.62 -42.15 16 13 C 0.09 3.16 9.90 127.77 1.27 4.42 16 14 S 2.80 108.09 6.14 -56.49 -0.35 107.75 16 15 O -1.02 -47.29 16.70 -128.00 -2.14 -49.42 16 16 O -1.01 -39.79 16.21 -128.00 -2.07 -41.87 16 17 N -1.12 -33.83 6.05 -187.49 -1.14 -34.97 16 18 C 0.12 2.90 6.01 86.38 0.52 3.42 16 19 C -0.11 -2.18 4.83 30.59 0.15 -2.03 16 20 C -0.08 -1.44 2.35 -10.74 -0.03 -1.46 16 21 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 22 C -0.11 -1.73 5.29 30.67 0.16 -1.57 16 23 C -0.12 -1.62 6.09 30.64 0.19 -1.43 16 24 C 0.05 0.80 5.47 86.32 0.47 1.27 16 25 N -0.56 -10.10 4.91 -922.60 -4.53 -14.63 16 26 C 0.02 0.36 9.59 127.69 1.22 1.59 16 27 C 0.06 1.06 4.49 86.33 0.39 1.45 16 28 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 2.05 6.66 -2.39 -0.02 2.03 16 31 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.51 6.43 -2.38 -0.02 2.49 16 34 H 0.08 2.34 7.02 -2.39 -0.02 2.33 16 35 H 0.42 11.38 8.65 -96.75 -0.84 10.54 16 36 H 0.07 1.86 6.20 -2.39 -0.01 1.84 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 45 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 46 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 49 H 0.07 1.47 6.60 -2.39 -0.02 1.45 16 50 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -65.18 395.23 -3.75 -68.93 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.07 Total: 26.10 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.76 Total: -12.14 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -7.05 Total: -142.62 kcal Atomic # 8 Polarization: -87.08 SS G_CDS: -4.21 Total: -91.29 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 108.09 SS G_CDS: -0.35 Total: 107.75 kcal Total: -65.18 -3.75 -68.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424199751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.148 kcal (2) G-P(sol) polarization free energy of solvation -65.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds