Wall clock time and date at job start Tue Mar 31 2020 17:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99999 * 85.00441 * 3 2 1 5 5 C 1.50700 * 109.47099 * 84.99452 * 4 3 2 6 6 H 1.07992 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99695 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00026 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99768 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47146 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47043 * 119.99680 * 9 7 5 12 12 H 1.48497 * 109.46888 * 240.00002 * 9 7 5 13 13 S 1.65593 * 120.00395 * 265.00156 * 3 2 1 14 14 O 1.42100 * 106.40784 * 203.54110 * 13 3 2 15 15 O 1.42105 * 106.40278 * 336.46109 * 13 3 2 16 16 N 1.65598 * 107.21993 * 90.00069 * 13 3 2 17 17 C 1.46502 * 120.00204 * 65.00171 * 16 13 3 18 18 H 1.09003 * 110.28407 * 337.13128 * 17 16 13 19 19 C 1.54379 * 110.32503 * 99.36192 * 17 16 13 20 20 N 1.48558 * 104.59161 * 95.04535 * 19 17 16 21 21 C 1.46903 * 110.99713 * 159.03886 * 20 19 17 22 22 C 1.53002 * 109.46910 * 74.58313 * 21 20 19 23 23 C 1.48559 * 104.22361 * 39.48350 * 20 19 17 24 24 C 1.54254 * 110.32688 * 215.00425 * 17 16 13 25 25 C 1.53003 * 110.32552 * 359.97438 * 24 17 16 26 26 C 1.53002 * 110.32531 * 122.20495 * 24 17 16 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08995 * 109.47474 * 205.00200 * 4 3 2 33 33 H 1.09003 * 109.46943 * 324.99971 * 4 3 2 34 34 H 0.97000 * 119.99891 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99875 * 245.00508 * 16 13 3 36 36 H 1.08995 * 110.41080 * 213.82647 * 19 17 16 37 37 H 1.09004 * 110.41207 * 336.26946 * 19 17 16 38 38 H 1.09003 * 109.46825 * 194.58009 * 21 20 19 39 39 H 1.08999 * 109.47354 * 314.58225 * 21 20 19 40 40 H 1.08994 * 109.47426 * 300.00253 * 22 21 20 41 41 H 1.09003 * 109.46703 * 59.99805 * 22 21 20 42 42 H 1.09002 * 109.47134 * 179.97438 * 22 21 20 43 43 H 1.09002 * 110.41430 * 201.73609 * 23 20 19 44 44 H 1.09000 * 110.40691 * 79.29346 * 23 20 19 45 45 H 1.09005 * 109.47017 * 59.99554 * 25 24 17 46 46 H 1.08991 * 109.47657 * 180.02562 * 25 24 17 47 47 H 1.09004 * 109.46965 * 300.00350 * 25 24 17 48 48 H 1.08992 * 109.46939 * 60.00346 * 26 24 17 49 49 H 1.08999 * 109.46910 * 180.02562 * 26 24 17 50 50 H 1.08998 * 109.46706 * 299.99625 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7887 1.8823 6 1 4.1723 1.1117 1.3836 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9645 3.8511 10 1 6.2459 1.0174 2.9759 11 1 6.2968 3.2147 4.0013 12 1 5.3028 1.3463 5.1853 13 16 2.4120 2.1203 -1.4286 14 8 3.3282 3.1572 -1.1049 15 8 2.7094 1.0801 -2.3499 16 7 1.0430 2.8643 -1.9893 17 6 0.4512 3.9731 -1.2366 18 1 0.7546 3.9244 -0.1907 19 6 0.8681 5.3244 -1.8557 20 7 -0.2483 5.6776 -2.7699 21 6 -0.2607 7.1190 -3.0533 22 6 0.8735 7.4579 -4.0227 23 6 -1.4698 5.2703 -2.0288 24 6 -1.0868 3.9375 -1.3504 25 6 -1.5284 2.7553 -2.2155 26 6 -1.7206 3.8471 0.0392 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0921 3.1802 1.0757 33 1 1.3618 1.8096 1.9454 34 1 3.2791 3.5874 4.5382 35 1 0.6329 2.5659 -2.8162 36 1 0.9771 6.0810 -1.0787 37 1 1.7975 5.2158 -2.4148 38 1 -1.2158 7.3929 -3.5016 39 1 -0.1229 7.6731 -2.1248 40 1 1.8285 7.1839 -3.5745 41 1 0.7356 6.9037 -4.9511 42 1 0.8641 8.5273 -4.2333 43 1 -2.3007 5.1209 -2.7183 44 1 -1.7266 6.0185 -1.2790 45 1 -1.1836 1.8253 -1.7634 46 1 -2.6159 2.7436 -2.2870 47 1 -1.1001 2.8550 -3.2129 48 1 -1.4277 4.7154 0.6293 49 1 -2.8060 3.8224 -0.0574 50 1 -1.3796 2.9386 0.5356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464674422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:45 Heat of formation + Delta-G solvation = -74.878677 kcal Electronic energy + Delta-G solvation = -29928.430470 eV Core-core repulsion = 26117.318277 eV Total energy + Delta-G solvation = -3811.112193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.91749 -36.56507 -36.06632 -35.44401 -35.08898 -33.06922 -32.66935 -30.66911 -29.98998 -28.14938 -26.99863 -26.57645 -25.08864 -23.16707 -22.74759 -21.70348 -20.84909 -19.09576 -18.71517 -17.33919 -16.74145 -16.47677 -16.19089 -15.57924 -15.42408 -15.01930 -14.35640 -14.28750 -13.89695 -13.74471 -13.46166 -13.39890 -13.02433 -12.93029 -12.69264 -12.58904 -12.25908 -12.18074 -12.08736 -11.82281 -11.71861 -11.59872 -11.53977 -11.35862 -11.27898 -11.16113 -11.04901 -11.00325 -10.89299 -10.78403 -10.72845 -10.52355 -10.34856 -10.32469 -9.97462 -9.72793 -9.15058 -8.50409 -8.44411 -8.05814 -6.07372 -4.10334 1.30447 3.30649 3.38542 3.43968 3.58500 3.95514 4.18698 4.42833 4.45429 4.62712 4.86079 4.99174 5.08417 5.18254 5.25938 5.31006 5.33080 5.38099 5.41181 5.43787 5.49153 5.56127 5.65761 5.71407 5.72652 5.73860 5.75963 5.87402 5.89275 5.96111 5.96748 6.06669 6.15195 6.21306 6.22673 6.28587 6.34958 6.39520 6.63663 6.67024 6.85819 7.00290 7.18199 7.31581 7.44049 7.65784 7.91258 8.20933 8.92457 9.54982 11.01176 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.004571 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.133545 B = 6123.800214 C = 6616.583961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.119 3.881 3 N -0.991 5.991 4 C 0.258 3.742 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.777 3.223 14 O -0.965 6.965 15 O -1.001 7.001 16 N -1.121 6.121 17 C 0.161 3.839 18 H 0.102 0.898 19 C 0.019 3.981 20 N -0.509 5.509 21 C 0.040 3.960 22 C -0.147 4.147 23 C 0.040 3.960 24 C -0.071 4.071 25 C -0.135 4.135 26 C -0.142 4.142 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.411 0.589 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 3.168 -10.948 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.008 4.008 3 N -0.833 5.833 4 C 0.136 3.864 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.785 3.215 14 O -0.948 6.948 15 O -0.985 6.985 16 N -0.880 5.880 17 C 0.053 3.947 18 H 0.120 0.880 19 C -0.111 4.111 20 N -0.233 5.233 21 C -0.089 4.089 22 C -0.205 4.205 23 C -0.088 4.088 24 C -0.073 4.073 25 C -0.192 4.192 26 C -0.200 4.200 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.246 0.754 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.790 3.092 -11.563 16.801 hybrid contribution 0.274 0.319 1.216 1.287 sum -11.517 3.411 -10.346 15.853 Atomic orbital electron populations 1.22324 0.97303 1.01370 1.02078 1.21113 0.93012 0.83247 1.03407 1.57712 1.81055 1.21452 1.23110 1.19035 0.97377 0.90828 0.79111 1.21535 1.02080 1.27508 1.05397 0.92148 1.24908 0.97294 0.94839 0.96890 1.69916 1.36057 1.30417 1.17178 0.86486 0.83999 0.78342 0.78890 1.19646 1.20848 1.21023 1.02049 0.73515 0.73233 0.72678 1.93625 1.59779 1.57536 1.83895 1.93527 1.83612 1.57559 1.63802 1.56361 1.49322 1.46535 1.35799 1.21512 0.92310 0.85425 0.95494 0.88023 1.23695 0.95800 0.96428 0.95134 1.65423 1.02549 1.15485 1.39861 1.22230 0.99625 0.88375 0.98657 1.21731 0.98453 1.00525 0.99749 1.23247 0.93765 0.95534 0.96258 1.21535 0.94297 0.95417 0.96100 1.21841 1.00353 0.97489 0.99537 1.21912 1.00218 1.02953 0.94867 0.92363 0.92025 0.92978 0.89863 0.90703 0.94703 0.94747 0.92816 0.75358 0.92750 0.88978 0.91157 0.94561 0.92446 0.92003 0.92605 0.90142 0.93599 0.91604 0.92806 0.91993 0.92298 0.92469 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.12 2.01 6.40 -4.04 -0.03 1.99 16 3 N -0.99 -19.81 2.82 -115.66 -0.33 -20.13 16 4 C 0.26 6.18 4.85 -5.19 -0.03 6.15 16 5 C -0.53 -14.46 9.38 -34.44 -0.32 -14.78 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 S 2.78 54.62 6.02 -107.50 -0.65 53.97 16 14 O -0.97 -22.84 16.87 -57.17 -0.96 -23.80 16 15 O -1.00 -20.98 16.69 -57.17 -0.95 -21.93 16 16 N -1.12 -16.74 4.79 -3.72 -0.02 -16.75 16 17 C 0.16 2.31 3.25 -66.55 -0.22 2.10 16 18 H 0.10 1.67 5.84 -51.93 -0.30 1.37 16 19 C 0.02 0.27 5.63 -2.18 -0.01 0.25 16 20 N -0.51 -6.03 5.34 -229.97 -1.23 -7.25 16 21 C 0.04 0.41 5.55 -3.82 -0.02 0.39 16 22 C -0.15 -1.47 10.03 37.16 0.37 -1.10 16 23 C 0.04 0.42 5.55 -2.18 -0.01 0.41 16 24 C -0.07 -0.81 1.03 -153.13 -0.16 -0.97 16 25 C -0.13 -1.37 7.18 37.16 0.27 -1.10 16 26 C -0.14 -1.56 8.26 37.16 0.31 -1.26 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.64 5.79 -51.93 -0.30 0.34 16 30 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 31 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 32 H 0.04 0.88 6.17 -51.93 -0.32 0.56 16 33 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 35 H 0.41 5.34 6.50 -34.47 -0.22 5.11 16 36 H 0.05 0.77 7.75 -51.93 -0.40 0.37 16 37 H 0.09 1.43 7.76 -51.93 -0.40 1.03 16 38 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.04 0.38 7.77 -51.93 -0.40 -0.02 16 40 H 0.06 0.64 7.47 -51.93 -0.39 0.25 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 44 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 45 H 0.07 0.70 5.48 -51.93 -0.28 0.41 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.63 6.91 -51.93 -0.36 0.27 16 48 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -32.00 394.88 -10.78 -42.78 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.74 Total: 3.50 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 0.44 Total: -8.21 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -0.84 Total: -68.94 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.92 Total: -45.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.65 Total: 53.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.00 -10.78 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464674422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.097 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds