Wall clock time and date at job start Tue Mar 31 2020 17:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99999 * 85.00441 * 3 2 1 5 5 C 1.50700 * 109.47099 * 84.99452 * 4 3 2 6 6 H 1.07992 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99695 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00026 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99768 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47146 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47043 * 119.99680 * 9 7 5 12 12 H 1.48497 * 109.46888 * 240.00002 * 9 7 5 13 13 S 1.65593 * 120.00395 * 265.00156 * 3 2 1 14 14 O 1.42100 * 106.40784 * 203.54110 * 13 3 2 15 15 O 1.42105 * 106.40278 * 336.46109 * 13 3 2 16 16 N 1.65598 * 107.21993 * 90.00069 * 13 3 2 17 17 C 1.46502 * 120.00204 * 65.00171 * 16 13 3 18 18 H 1.09003 * 110.28407 * 337.13128 * 17 16 13 19 19 C 1.54379 * 110.32503 * 99.36192 * 17 16 13 20 20 N 1.48558 * 104.59161 * 95.04535 * 19 17 16 21 21 C 1.46903 * 110.99713 * 159.03886 * 20 19 17 22 22 C 1.53002 * 109.46910 * 74.58313 * 21 20 19 23 23 C 1.48559 * 104.22361 * 39.48350 * 20 19 17 24 24 C 1.54254 * 110.32688 * 215.00425 * 17 16 13 25 25 C 1.53003 * 110.32552 * 359.97438 * 24 17 16 26 26 C 1.53002 * 110.32531 * 122.20495 * 24 17 16 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08995 * 109.47474 * 205.00200 * 4 3 2 33 33 H 1.09003 * 109.46943 * 324.99971 * 4 3 2 34 34 H 0.97000 * 119.99891 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99875 * 245.00508 * 16 13 3 36 36 H 1.08995 * 110.41080 * 213.82647 * 19 17 16 37 37 H 1.09004 * 110.41207 * 336.26946 * 19 17 16 38 38 H 1.09003 * 109.46825 * 194.58009 * 21 20 19 39 39 H 1.08999 * 109.47354 * 314.58225 * 21 20 19 40 40 H 1.08994 * 109.47426 * 300.00253 * 22 21 20 41 41 H 1.09003 * 109.46703 * 59.99805 * 22 21 20 42 42 H 1.09002 * 109.47134 * 179.97438 * 22 21 20 43 43 H 1.09002 * 110.41430 * 201.73609 * 23 20 19 44 44 H 1.09000 * 110.40691 * 79.29346 * 23 20 19 45 45 H 1.09005 * 109.47017 * 59.99554 * 25 24 17 46 46 H 1.08991 * 109.47657 * 180.02562 * 25 24 17 47 47 H 1.09004 * 109.46965 * 300.00350 * 25 24 17 48 48 H 1.08992 * 109.46939 * 60.00346 * 26 24 17 49 49 H 1.08999 * 109.46910 * 180.02562 * 26 24 17 50 50 H 1.08998 * 109.46706 * 299.99625 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7887 1.8823 6 1 4.1723 1.1117 1.3836 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9645 3.8511 10 1 6.2459 1.0174 2.9759 11 1 6.2968 3.2147 4.0013 12 1 5.3028 1.3463 5.1853 13 16 2.4120 2.1203 -1.4286 14 8 3.3282 3.1572 -1.1049 15 8 2.7094 1.0801 -2.3499 16 7 1.0430 2.8643 -1.9893 17 6 0.4512 3.9731 -1.2366 18 1 0.7546 3.9244 -0.1907 19 6 0.8681 5.3244 -1.8557 20 7 -0.2483 5.6776 -2.7699 21 6 -0.2607 7.1190 -3.0533 22 6 0.8735 7.4579 -4.0227 23 6 -1.4698 5.2703 -2.0288 24 6 -1.0868 3.9375 -1.3504 25 6 -1.5284 2.7553 -2.2155 26 6 -1.7206 3.8471 0.0392 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0921 3.1802 1.0757 33 1 1.3618 1.8096 1.9454 34 1 3.2791 3.5874 4.5382 35 1 0.6329 2.5659 -2.8162 36 1 0.9771 6.0810 -1.0787 37 1 1.7975 5.2158 -2.4148 38 1 -1.2158 7.3929 -3.5016 39 1 -0.1229 7.6731 -2.1248 40 1 1.8285 7.1839 -3.5745 41 1 0.7356 6.9037 -4.9511 42 1 0.8641 8.5273 -4.2333 43 1 -2.3007 5.1209 -2.7183 44 1 -1.7266 6.0185 -1.2790 45 1 -1.1836 1.8253 -1.7634 46 1 -2.6159 2.7436 -2.2870 47 1 -1.1001 2.8550 -3.2129 48 1 -1.4277 4.7154 0.6293 49 1 -2.8060 3.8224 -0.0574 50 1 -1.3796 2.9386 0.5356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464674422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:44 Heat of formation + Delta-G solvation = -98.481086 kcal Electronic energy + Delta-G solvation = -29929.453947 eV Core-core repulsion = 26117.318277 eV Total energy + Delta-G solvation = -3812.135670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.92413 -38.26358 -37.67237 -36.82363 -36.44948 -34.70015 -34.20431 -31.65005 -31.42905 -29.17958 -28.48800 -27.88793 -25.98158 -24.94512 -23.77133 -23.26016 -21.81242 -20.22368 -20.10366 -19.02241 -18.26493 -18.21775 -17.73160 -16.92664 -16.58241 -16.32610 -15.99938 -15.39915 -15.19682 -14.85700 -14.71960 -14.57128 -14.49088 -14.02346 -13.87449 -13.82636 -13.59674 -13.53681 -13.34302 -13.18438 -13.08996 -13.04304 -12.93441 -12.73544 -12.65073 -12.59971 -12.46889 -12.30959 -12.22290 -12.12622 -11.94164 -11.74935 -11.70117 -11.64512 -11.51725 -11.31292 -10.59971 -10.38618 -9.77465 -9.45312 -8.19759 -6.30087 -0.29282 1.37160 1.40086 1.51163 2.06871 2.40458 2.66283 3.02113 3.11645 3.43975 3.47056 3.61930 3.98616 3.99964 4.13196 4.21031 4.25217 4.33311 4.38694 4.41779 4.49716 4.53588 4.63560 4.67698 4.73129 4.82723 4.87111 4.91736 4.96046 4.99647 5.05946 5.06093 5.10453 5.13642 5.19444 5.22511 5.29960 5.33066 5.34515 5.47484 5.55696 5.62537 5.73274 5.87175 5.93562 6.09996 6.14132 6.23405 6.78051 7.38381 8.87569 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.004571 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.133545 B = 6123.800214 C = 6616.583961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.994 5.994 4 C 0.278 3.722 5 C -0.547 4.547 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.270 1.270 13 S 2.791 3.209 14 O -1.011 7.011 15 O -1.014 7.014 16 N -1.099 6.099 17 C 0.155 3.845 18 H 0.075 0.925 19 C 0.020 3.980 20 N -0.510 5.510 21 C 0.037 3.963 22 C -0.145 4.145 23 C 0.043 3.957 24 C -0.065 4.065 25 C -0.134 4.134 26 C -0.140 4.140 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.017 0.983 33 H 0.029 0.971 34 H 0.266 0.734 35 H 0.424 0.576 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 2.929 -11.834 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.016 4.016 3 N -0.835 5.835 4 C 0.155 3.845 5 C -0.587 4.587 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.195 1.195 13 S 2.799 3.201 14 O -0.994 6.994 15 O -0.998 6.998 16 N -0.863 5.863 17 C 0.047 3.953 18 H 0.093 0.907 19 C -0.110 4.110 20 N -0.234 5.234 21 C -0.091 4.091 22 C -0.203 4.203 23 C -0.085 4.085 24 C -0.067 4.067 25 C -0.192 4.192 26 C -0.197 4.197 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.101 0.899 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.827 2.827 -12.466 18.830 hybrid contribution 0.876 0.415 1.442 1.737 sum -12.951 3.242 -11.024 17.314 Atomic orbital electron populations 1.22245 0.94254 1.03282 1.02382 1.21360 0.95611 0.81409 1.03207 1.57568 1.81579 1.22649 1.21739 1.18566 0.95592 0.90115 0.80268 1.21870 1.03435 1.27448 1.05902 0.93361 1.25645 1.00497 0.94768 0.97415 1.69993 1.37500 1.31011 1.17599 0.85622 0.80106 0.78136 0.78539 1.19688 1.20634 1.19487 1.01381 0.73817 0.72554 0.72321 1.93567 1.62247 1.59000 1.84556 1.93496 1.84306 1.58041 1.63930 1.55842 1.48042 1.46282 1.36139 1.21605 0.94802 0.85036 0.93900 0.90661 1.23550 0.96121 0.96207 0.95104 1.65432 1.02196 1.16709 1.39097 1.22324 1.00729 0.87310 0.98726 1.21721 0.97400 1.01695 0.99444 1.23314 0.93583 0.94878 0.96697 1.21535 0.91461 0.96852 0.96845 1.21849 1.01907 0.96387 0.99022 1.21897 1.01705 1.01826 0.94317 0.89601 0.92794 0.91621 0.90889 0.90081 0.96545 0.95253 0.92460 0.73759 0.93534 0.91032 0.88986 0.94810 0.94436 0.92042 0.90834 0.87911 0.93076 0.92090 0.90452 0.91872 0.93266 0.89944 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 10.24 71.98 0.74 -3.40 16 2 C 0.11 3.69 6.40 86.38 0.55 4.24 16 3 N -0.99 -40.59 2.82 -519.84 -1.47 -42.06 16 4 C 0.28 13.76 4.85 85.63 0.42 14.18 16 5 C -0.55 -30.92 9.38 25.60 0.24 -30.68 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.02 0.92 5.46 84.66 0.46 1.39 16 8 N -0.92 -53.30 13.29 21.45 0.28 -53.02 16 9 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 S 2.79 112.28 6.02 -56.49 -0.34 111.94 16 14 O -1.01 -49.94 16.87 -128.00 -2.16 -52.10 16 15 O -1.01 -42.55 16.69 -128.00 -2.14 -44.68 16 16 N -1.10 -32.80 4.79 -165.67 -0.79 -33.59 16 17 C 0.16 4.48 3.25 45.88 0.15 4.63 16 18 H 0.08 2.61 5.84 -2.39 -0.01 2.59 16 19 C 0.02 0.58 5.63 86.45 0.49 1.07 16 20 N -0.51 -11.38 5.34 -881.49 -4.71 -16.09 16 21 C 0.04 0.71 5.55 86.30 0.48 1.18 16 22 C -0.14 -2.76 10.03 71.98 0.72 -2.04 16 23 C 0.04 0.80 5.55 86.45 0.48 1.28 16 24 C -0.06 -1.36 1.03 -51.29 -0.05 -1.41 16 25 C -0.13 -2.34 7.18 71.98 0.52 -1.83 16 26 C -0.14 -2.88 8.26 71.98 0.59 -2.29 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.48 5.79 -2.39 -0.01 1.47 16 30 H 0.07 2.58 8.11 -2.39 -0.02 2.57 16 31 H 0.08 2.62 6.91 -2.39 -0.02 2.61 16 32 H 0.02 0.88 6.17 -2.39 -0.01 0.87 16 33 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 34 H 0.27 14.51 8.31 -92.71 -0.77 13.73 16 35 H 0.42 10.54 6.50 -96.74 -0.63 9.91 16 36 H 0.05 1.38 7.75 -2.39 -0.02 1.36 16 37 H 0.07 2.34 7.76 -2.38 -0.02 2.32 16 38 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 39 H 0.03 0.67 7.77 -2.39 -0.02 0.65 16 40 H 0.04 0.85 7.47 -2.39 -0.02 0.83 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 1.52 7.86 -2.39 -0.02 1.50 16 44 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 45 H 0.06 1.13 5.48 -2.38 -0.01 1.12 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.10 6.91 -2.39 -0.02 1.08 16 48 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 49 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.87 394.88 -3.22 -73.10 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.29 Total: 23.32 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 5.78 Total: -13.68 kcal Atomic # 7 Polarization: -138.07 SS G_CDS: -6.68 Total: -144.75 kcal Atomic # 8 Polarization: -92.49 SS G_CDS: -4.30 Total: -96.79 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 112.28 SS G_CDS: -0.34 Total: 111.94 kcal Total: -69.87 -3.22 -73.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464674422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.384 kcal (2) G-P(sol) polarization free energy of solvation -69.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds