Wall clock time and date at job start Tue Mar 31 2020 17:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46956 * 300.00324 * 3 2 1 6 6 H 1.48496 * 109.46756 * 60.00287 * 3 2 1 7 7 C 1.38814 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00019 * 163.06560 * 7 2 1 9 9 N 1.36937 * 119.99722 * 343.06800 * 7 2 1 10 10 C 1.46925 * 120.63099 * 331.84754 * 9 7 2 11 11 C 1.53191 * 108.77479 * 233.58798 * 10 9 7 12 12 C 1.53035 * 109.31352 * 305.36327 * 11 10 9 13 13 C 1.53006 * 109.45979 * 181.38594 * 12 11 10 14 14 N 1.46506 * 109.47062 * 174.97442 * 13 12 11 15 15 C 1.34770 * 120.00010 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99867 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00047 * 180.02562 * 15 14 13 18 18 C 1.50696 * 109.46961 * 180.02562 * 17 15 14 19 19 N 1.30838 * 125.95997 * 265.29920 * 18 17 15 20 20 C 1.33241 * 109.82817 * 180.12509 * 19 18 17 21 21 C 1.50700 * 125.52102 * 179.85224 * 20 19 18 22 22 C 1.53002 * 117.49704 * 119.71950 * 21 20 19 23 23 C 1.53005 * 60.03467 * 107.49838 * 22 21 20 24 24 N 1.30712 * 108.94662 * 359.59041 * 20 19 18 25 25 N 1.34428 * 125.96477 * 84.97135 * 18 17 15 26 26 H 0.97002 * 126.82282 * 359.97438 * 25 18 17 27 27 C 1.53040 * 109.52671 * 61.37576 * 12 11 10 28 28 C 1.46922 * 120.62917 * 151.82613 * 9 7 2 29 29 H 0.96999 * 120.00099 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58718 * 113.79772 * 10 9 7 31 31 H 1.09004 * 109.70207 * 353.44559 * 10 9 7 32 32 H 1.09001 * 109.49420 * 185.41393 * 11 10 9 33 33 H 1.08995 * 109.52639 * 65.33836 * 11 10 9 34 34 H 1.08996 * 109.46430 * 301.36183 * 12 11 10 35 35 H 1.08996 * 109.46851 * 54.97821 * 13 12 11 36 36 H 1.08994 * 109.47222 * 294.97275 * 13 12 11 37 37 H 0.97003 * 119.99357 * 359.97438 * 14 13 12 38 38 H 1.08994 * 109.47345 * 59.99329 * 17 15 14 39 39 H 1.09007 * 109.46743 * 299.99115 * 17 15 14 40 40 H 1.08993 * 115.55772 * 334.05072 * 21 20 19 41 41 H 1.08995 * 117.50028 * 215.00172 * 22 21 20 42 42 H 1.09006 * 117.49783 * 0.02562 * 22 21 20 43 43 H 1.08995 * 117.49814 * 107.49854 * 23 22 21 44 44 H 1.08999 * 117.50004 * 252.52769 * 23 22 21 45 45 H 1.08999 * 109.49783 * 58.57839 * 27 12 11 46 46 H 1.08998 * 109.49988 * 178.67921 * 27 12 11 47 47 H 1.09000 * 109.59093 * 246.19624 * 28 9 7 48 48 H 1.09003 * 109.59137 * 6.48584 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2730 9 7 1.3701 -2.3625 0.3443 10 6 0.2262 -2.3409 1.2661 11 6 0.4977 -3.3208 2.4119 12 6 0.8122 -4.7020 1.8328 13 6 1.0500 -5.6916 2.9752 14 7 1.2323 -7.0374 2.4256 15 6 1.4567 -8.0781 3.2519 16 8 1.5082 -7.9005 4.4507 17 6 1.6449 -9.4623 2.6865 18 6 1.8777 -10.4371 3.8119 19 7 3.0427 -10.8296 4.2597 20 6 2.8747 -11.6962 5.2577 21 6 3.9811 -12.3716 6.0265 22 6 4.0484 -12.1211 7.5343 23 6 3.5871 -13.4806 7.0053 24 7 1.5948 -11.8613 5.4655 25 7 0.9248 -11.0506 4.5348 26 1 -0.0350 -10.9521 4.4343 27 6 2.0677 -4.6177 0.9617 28 6 1.8139 -3.6527 -0.2007 29 1 -0.4850 0.8400 0.0004 30 1 -0.6770 -2.6411 0.7347 31 1 0.0968 -1.3358 1.6677 32 1 -0.3829 -3.3862 3.0509 33 1 1.3471 -2.9699 2.9978 34 1 -0.0278 -5.0417 1.2270 35 1 0.1903 -5.6863 3.6453 36 1 1.9433 -5.4008 3.5278 37 1 1.1908 -7.1794 1.4669 38 1 2.5049 -9.4674 2.0170 39 1 0.7518 -9.7532 2.1333 40 1 4.9245 -12.4832 5.4923 41 1 5.0361 -12.0680 7.9921 42 1 3.2922 -11.4682 7.9704 43 1 4.2714 -14.3219 7.1150 44 1 2.5276 -13.7216 7.0928 45 1 2.9025 -4.2542 1.5610 46 1 2.3047 -5.6062 0.5685 47 1 1.0403 -4.0600 -0.8517 48 1 2.7333 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465127789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:41 Heat of formation + Delta-G solvation = 83.893358 kcal Electronic energy + Delta-G solvation = -27663.233941 eV Core-core repulsion = 23755.855420 eV Total energy + Delta-G solvation = -3907.378521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48873 -39.88950 -37.91602 -37.46632 -35.08129 -33.23622 -32.76460 -32.64292 -30.87863 -29.84414 -29.04766 -26.67136 -24.82452 -24.06812 -22.72610 -22.40206 -21.82370 -21.06280 -20.53647 -20.14402 -19.17296 -18.33678 -17.50848 -16.73479 -16.24603 -15.90501 -15.70604 -15.48190 -14.98981 -14.84749 -14.31480 -14.01784 -13.85549 -13.65828 -13.53284 -13.27302 -12.92052 -12.48290 -12.43585 -12.36552 -12.16186 -11.89368 -11.85552 -11.45713 -11.38548 -11.02513 -10.87407 -10.75963 -10.55372 -10.37359 -10.29256 -10.27791 -10.22484 -10.10354 -9.93341 -9.63056 -9.59034 -9.46592 -9.14951 -8.50008 -6.70075 -5.81884 -3.24336 1.23520 2.25919 2.37540 2.42153 3.04177 3.35383 3.43694 3.45710 3.47637 3.64618 4.14681 4.24382 4.47443 4.50655 4.55573 4.61717 4.72156 4.95431 5.04349 5.13605 5.16971 5.30845 5.31560 5.37974 5.44893 5.55350 5.73597 5.79710 5.80037 5.84959 5.96793 5.97969 6.06914 6.12266 6.26989 6.29837 6.39733 6.55245 6.63133 6.70954 6.71340 6.76659 6.93487 7.28456 7.34664 7.62245 7.77533 7.81683 7.98489 8.42523 9.18827 9.82263 10.38555 11.26653 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.001754 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.717148 B =15962.021259 C =16193.586717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.123 3.877 14 N -0.719 5.719 15 C 0.514 3.486 16 O -0.533 6.533 17 C -0.069 4.069 18 C 0.311 3.689 19 N -0.526 5.526 20 C 0.260 3.740 21 C -0.073 4.073 22 C -0.158 4.158 23 C -0.161 4.161 24 N -0.311 5.311 25 N -0.472 5.472 26 H 0.440 0.560 27 C -0.128 4.128 28 C 0.145 3.855 29 H 0.253 0.747 30 H 0.017 0.983 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.403 0.597 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.016 0.984 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 -25.040 7.339 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.109 4.109 13 C 0.000 4.000 14 N -0.371 5.371 15 C 0.297 3.703 16 O -0.410 6.410 17 C -0.112 4.112 18 C 0.032 3.968 19 N -0.254 5.254 20 C -0.022 4.022 21 C -0.094 4.094 22 C -0.197 4.197 23 C -0.199 4.199 24 N -0.141 5.141 25 N -0.189 5.189 26 H 0.286 0.714 27 C -0.167 4.167 28 C 0.019 3.981 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.223 -25.112 8.619 26.643 hybrid contribution -0.398 1.118 -0.763 1.411 sum 1.825 -23.994 7.856 25.313 Atomic orbital electron populations 1.70032 1.05271 1.25407 1.54060 1.25043 0.95285 0.98428 1.00901 0.86242 0.79411 0.83970 0.77280 1.20244 1.21737 1.21547 1.19228 0.92571 0.84819 1.41538 0.91682 1.44051 1.35893 1.01550 1.50010 1.20757 0.88611 0.98158 0.87889 1.22183 1.00378 0.94634 1.00117 1.21316 0.98827 0.95366 0.95344 1.21634 1.01675 0.79849 0.96803 1.46016 1.72587 1.08064 1.10405 1.20083 0.77220 0.85850 0.87096 1.90785 1.49901 1.85271 1.15014 1.20234 1.06953 0.89597 0.94378 1.23314 0.84588 0.94456 0.94458 1.70244 1.24681 1.16055 1.14439 1.23115 0.90999 0.94452 0.93615 1.20084 0.95787 1.02616 0.90910 1.23050 1.03549 0.99538 0.93547 1.23055 1.03081 0.92219 1.01514 1.77899 1.06823 1.16788 1.12557 1.47820 1.10305 1.34523 1.26278 0.71408 1.22086 0.96984 0.98766 0.98860 1.20892 0.97558 0.87028 0.92672 0.93686 0.96453 0.89405 0.93096 0.92358 0.91250 0.91720 0.91410 0.76210 0.84660 0.86172 0.85027 0.87637 0.88460 0.87814 0.87867 0.92105 0.93404 0.96619 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.19 55.49 0.62 -25.12 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.24 2.99 -172.31 -0.52 -14.75 16 10 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 11 C -0.13 -2.36 5.36 -26.61 -0.14 -2.50 16 12 C -0.09 -1.30 2.19 -90.58 -0.20 -1.49 16 13 C 0.12 1.59 5.06 -4.04 -0.02 1.57 16 14 N -0.72 -7.19 5.27 -60.29 -0.32 -7.51 16 15 C 0.51 5.66 7.82 -10.99 -0.09 5.57 16 16 O -0.53 -8.48 16.03 5.55 0.09 -8.39 16 17 C -0.07 -0.50 6.33 -29.04 -0.18 -0.68 16 18 C 0.31 3.37 6.73 -155.69 -1.05 2.32 16 19 N -0.53 -6.94 11.19 -8.16 -0.09 -7.03 16 20 C 0.26 3.24 7.69 -156.85 -1.21 2.03 16 21 C -0.07 -0.69 6.33 -91.73 -0.58 -1.27 16 22 C -0.16 -1.26 10.23 -26.73 -0.27 -1.54 16 23 C -0.16 -1.17 10.14 -26.69 -0.27 -1.44 16 24 N -0.31 -3.82 12.34 32.42 0.40 -3.42 16 25 N -0.47 -4.81 7.45 32.62 0.24 -4.57 16 26 H 0.44 3.03 8.96 -182.33 -1.63 1.40 16 27 C -0.13 -1.95 5.25 -26.61 -0.14 -2.09 16 28 C 0.15 2.82 6.52 -3.71 -0.02 2.79 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 2.95 7.65 -40.82 -0.31 2.63 16 38 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.84 7.88 -51.93 -0.41 0.43 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.58 7.15 -51.93 -0.37 0.21 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -35.36 392.64 -12.03 -47.39 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.92 Total: 0.87 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -4.42 Total: 0.22 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.34 Total: -62.40 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.36 -12.03 -47.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465127789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.286 kcal (2) G-P(sol) polarization free energy of solvation -35.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds