Wall clock time and date at job start Tue Mar 31 2020 17:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46956 * 300.00324 * 3 2 1 6 6 H 1.48496 * 109.46756 * 60.00287 * 3 2 1 7 7 C 1.38814 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00019 * 163.06560 * 7 2 1 9 9 N 1.36937 * 119.99722 * 343.06800 * 7 2 1 10 10 C 1.46925 * 120.63099 * 331.84754 * 9 7 2 11 11 C 1.53191 * 108.77479 * 233.58798 * 10 9 7 12 12 C 1.53035 * 109.31352 * 305.36327 * 11 10 9 13 13 C 1.53006 * 109.45979 * 181.38594 * 12 11 10 14 14 N 1.46506 * 109.47062 * 174.97442 * 13 12 11 15 15 C 1.34770 * 120.00010 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99867 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00047 * 180.02562 * 15 14 13 18 18 C 1.50696 * 109.46961 * 180.02562 * 17 15 14 19 19 N 1.30838 * 125.95997 * 265.29920 * 18 17 15 20 20 C 1.33241 * 109.82817 * 180.12509 * 19 18 17 21 21 C 1.50700 * 125.52102 * 179.85224 * 20 19 18 22 22 C 1.53002 * 117.49704 * 119.71950 * 21 20 19 23 23 C 1.53005 * 60.03467 * 107.49838 * 22 21 20 24 24 N 1.30712 * 108.94662 * 359.59041 * 20 19 18 25 25 N 1.34428 * 125.96477 * 84.97135 * 18 17 15 26 26 H 0.97002 * 126.82282 * 359.97438 * 25 18 17 27 27 C 1.53040 * 109.52671 * 61.37576 * 12 11 10 28 28 C 1.46922 * 120.62917 * 151.82613 * 9 7 2 29 29 H 0.96999 * 120.00099 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58718 * 113.79772 * 10 9 7 31 31 H 1.09004 * 109.70207 * 353.44559 * 10 9 7 32 32 H 1.09001 * 109.49420 * 185.41393 * 11 10 9 33 33 H 1.08995 * 109.52639 * 65.33836 * 11 10 9 34 34 H 1.08996 * 109.46430 * 301.36183 * 12 11 10 35 35 H 1.08996 * 109.46851 * 54.97821 * 13 12 11 36 36 H 1.08994 * 109.47222 * 294.97275 * 13 12 11 37 37 H 0.97003 * 119.99357 * 359.97438 * 14 13 12 38 38 H 1.08994 * 109.47345 * 59.99329 * 17 15 14 39 39 H 1.09007 * 109.46743 * 299.99115 * 17 15 14 40 40 H 1.08993 * 115.55772 * 334.05072 * 21 20 19 41 41 H 1.08995 * 117.50028 * 215.00172 * 22 21 20 42 42 H 1.09006 * 117.49783 * 0.02562 * 22 21 20 43 43 H 1.08995 * 117.49814 * 107.49854 * 23 22 21 44 44 H 1.08999 * 117.50004 * 252.52769 * 23 22 21 45 45 H 1.08999 * 109.49783 * 58.57839 * 27 12 11 46 46 H 1.08998 * 109.49988 * 178.67921 * 27 12 11 47 47 H 1.09000 * 109.59093 * 246.19624 * 28 9 7 48 48 H 1.09003 * 109.59137 * 6.48584 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2730 9 7 1.3701 -2.3625 0.3443 10 6 0.2262 -2.3409 1.2661 11 6 0.4977 -3.3208 2.4119 12 6 0.8122 -4.7020 1.8328 13 6 1.0500 -5.6916 2.9752 14 7 1.2323 -7.0374 2.4256 15 6 1.4567 -8.0781 3.2519 16 8 1.5082 -7.9005 4.4507 17 6 1.6449 -9.4623 2.6865 18 6 1.8777 -10.4371 3.8119 19 7 3.0427 -10.8296 4.2597 20 6 2.8747 -11.6962 5.2577 21 6 3.9811 -12.3716 6.0265 22 6 4.0484 -12.1211 7.5343 23 6 3.5871 -13.4806 7.0053 24 7 1.5948 -11.8613 5.4655 25 7 0.9248 -11.0506 4.5348 26 1 -0.0350 -10.9521 4.4343 27 6 2.0677 -4.6177 0.9617 28 6 1.8139 -3.6527 -0.2007 29 1 -0.4850 0.8400 0.0004 30 1 -0.6770 -2.6411 0.7347 31 1 0.0968 -1.3358 1.6677 32 1 -0.3829 -3.3862 3.0509 33 1 1.3471 -2.9699 2.9978 34 1 -0.0278 -5.0417 1.2270 35 1 0.1903 -5.6863 3.6453 36 1 1.9433 -5.4008 3.5278 37 1 1.1908 -7.1794 1.4669 38 1 2.5049 -9.4674 2.0170 39 1 0.7518 -9.7532 2.1333 40 1 4.9245 -12.4832 5.4923 41 1 5.0361 -12.0680 7.9921 42 1 3.2922 -11.4682 7.9704 43 1 4.2714 -14.3219 7.1150 44 1 2.5276 -13.7216 7.0928 45 1 2.9025 -4.2542 1.5610 46 1 2.3047 -5.6062 0.5685 47 1 1.0403 -4.0600 -0.8517 48 1 2.7333 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465127789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:40 Heat of formation + Delta-G solvation = 60.067508 kcal Electronic energy + Delta-G solvation = -27664.267108 eV Core-core repulsion = 23755.855420 eV Total energy + Delta-G solvation = -3908.411687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.28507 -40.84091 -39.33316 -38.11613 -36.42462 -34.54042 -33.75540 -33.49140 -32.49725 -31.40351 -29.98281 -28.10770 -25.73397 -25.52977 -23.86246 -23.32094 -22.97788 -22.31172 -21.42685 -20.90489 -20.63109 -19.14352 -18.72964 -18.20630 -17.15650 -16.84839 -16.60330 -16.56016 -16.28622 -15.71646 -15.65431 -15.29396 -15.23166 -14.84735 -14.73869 -14.58791 -13.99694 -13.84720 -13.73729 -13.37346 -13.13497 -13.00896 -12.86589 -12.75219 -12.58221 -12.43139 -12.23058 -12.15182 -11.98979 -11.82623 -11.60122 -11.48977 -11.33255 -11.14031 -11.12164 -11.08397 -10.88486 -10.53312 -10.36114 -10.10599 -8.65042 -7.86834 -5.31175 0.43847 1.44918 1.47727 1.51921 1.56569 1.57334 1.65149 2.24235 2.51486 2.78741 2.99769 3.27857 3.47866 3.56552 3.73566 3.80972 3.88113 3.92177 3.97504 4.06677 4.11341 4.16919 4.48543 4.50831 4.55416 4.56918 4.72270 4.74772 4.75624 4.83595 4.87852 4.95762 5.05350 5.07902 5.16909 5.20597 5.23420 5.31599 5.32426 5.32832 5.39220 5.46966 5.57806 5.67775 5.81274 6.06852 6.41161 6.52032 7.00596 7.17184 7.19872 7.90247 8.39841 9.19163 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.001754 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.717148 B =15962.021259 C =16193.586717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.613 5.613 10 C 0.177 3.823 11 C -0.124 4.124 12 C -0.077 4.077 13 C 0.137 3.863 14 N -0.705 5.705 15 C 0.516 3.484 16 O -0.587 6.587 17 C -0.059 4.059 18 C 0.307 3.693 19 N -0.560 5.560 20 C 0.245 3.755 21 C -0.094 4.094 22 C -0.158 4.158 23 C -0.144 4.144 24 N -0.335 5.335 25 N -0.468 5.468 26 H 0.453 0.547 27 C -0.115 4.115 28 C 0.138 3.862 29 H 0.249 0.751 30 H 0.001 0.999 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.421 0.579 38 H 0.160 0.840 39 H 0.170 0.830 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.077 0.923 43 H 0.130 0.870 44 H 0.092 0.908 45 H 0.046 0.954 46 H 0.091 0.909 47 H 0.022 0.978 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -27.266 6.779 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.164 4.164 12 C -0.095 4.095 13 C 0.013 3.987 14 N -0.358 5.358 15 C 0.302 3.698 16 O -0.467 6.467 17 C -0.101 4.101 18 C 0.028 3.972 19 N -0.289 5.289 20 C -0.037 4.037 21 C -0.114 4.114 22 C -0.196 4.196 23 C -0.182 4.182 24 N -0.165 5.165 25 N -0.187 5.187 26 H 0.301 0.699 27 C -0.154 4.154 28 C 0.013 3.987 29 H 0.058 0.942 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.259 0.741 38 H 0.177 0.823 39 H 0.187 0.813 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.096 0.904 43 H 0.148 0.852 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.110 0.890 47 H 0.039 0.961 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.942 -27.374 8.016 28.675 hybrid contribution -0.646 1.797 -0.622 2.008 sum 2.296 -25.577 7.394 26.723 Atomic orbital electron populations 1.70170 1.06545 1.25648 1.55691 1.25743 0.96022 1.01331 1.01546 0.85289 0.78685 0.80256 0.76732 1.19227 1.21889 1.21880 1.19533 0.92766 0.86247 1.40459 0.91820 1.44337 1.35961 1.02514 1.50825 1.20556 0.87900 0.97412 0.88988 1.21987 1.00716 0.95420 0.98234 1.21141 0.98956 0.93726 0.95719 1.21246 1.00857 0.80855 0.95740 1.45798 1.71955 1.06725 1.11300 1.20643 0.75725 0.87105 0.86312 1.90780 1.52297 1.86171 1.17485 1.20422 1.10301 0.86006 0.93343 1.23930 0.84144 0.94367 0.94764 1.70239 1.26208 1.17054 1.15388 1.23677 0.91677 0.94516 0.93790 1.20318 0.95696 1.04035 0.91396 1.23091 1.04145 0.99787 0.92616 1.23107 1.03029 0.92465 0.99558 1.77821 1.07111 1.17911 1.13637 1.47799 1.11024 1.34083 1.25747 0.69928 1.21948 0.96714 0.99665 0.97075 1.21101 0.97328 0.85889 0.94347 0.94201 0.98135 0.93355 0.91388 0.93513 0.89855 0.91947 0.93071 0.74123 0.82283 0.81284 0.84006 0.85504 0.90403 0.85162 0.88995 0.93498 0.89022 0.96051 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 11.19 21.65 0.24 -54.53 16 2 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 3 Si 0.96 44.78 29.59 68.60 2.03 46.81 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.26 -14.10 9.58 84.03 0.81 -13.29 16 8 H 0.06 3.40 7.88 -2.91 -0.02 3.37 16 9 N -0.61 -29.59 2.99 -699.07 -2.09 -31.69 16 10 C 0.18 8.20 5.30 86.36 0.46 8.66 16 11 C -0.12 -4.31 5.36 30.67 0.16 -4.14 16 12 C -0.08 -2.02 2.19 -10.77 -0.02 -2.05 16 13 C 0.14 3.18 5.06 86.38 0.44 3.62 16 14 N -0.71 -11.49 5.27 -463.05 -2.44 -13.93 16 15 C 0.52 9.88 7.82 87.66 0.69 10.56 16 16 O -0.59 -17.95 16.03 -3.06 -0.05 -18.00 16 17 C -0.06 -0.63 6.33 29.10 0.18 -0.44 16 18 C 0.31 6.07 6.73 138.22 0.93 7.00 16 19 N -0.56 -14.26 11.19 -179.73 -2.01 -16.27 16 20 C 0.24 6.03 7.69 138.63 1.07 7.10 16 21 C -0.09 -1.70 6.33 -11.51 -0.07 -1.77 16 22 C -0.16 -2.41 10.23 30.60 0.31 -2.10 16 23 C -0.14 -1.92 10.14 30.62 0.31 -1.61 16 24 N -0.34 -8.13 12.34 -51.33 -0.63 -8.77 16 25 N -0.47 -8.95 7.45 -50.71 -0.38 -9.33 16 26 H 0.45 5.54 8.96 -213.10 -1.91 3.63 16 27 C -0.12 -3.19 5.25 30.67 0.16 -3.03 16 28 C 0.14 5.18 6.52 86.37 0.56 5.74 16 29 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.05 2.60 6.07 -2.39 -0.01 2.59 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.42 3.99 7.65 -92.71 -0.71 3.28 16 38 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.17 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.45 7.88 -2.39 -0.02 1.43 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.09 1.77 7.15 -2.39 -0.02 1.76 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 Total: -1.00 -81.00 392.64 -0.57 -81.56 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -1.63 Total: 12.31 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.40 Total: 11.82 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -7.31 Total: -134.51 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.00 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -81.00 -0.57 -81.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465127789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.631 kcal (2) G-P(sol) polarization free energy of solvation -80.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds