Wall clock time and date at job start Tue Mar 31 2020 18:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00121 * 2 1 4 4 H 1.48506 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47356 * 300.00259 * 3 2 1 6 6 H 1.48497 * 109.46740 * 60.00450 * 3 2 1 7 7 C 1.38816 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99825 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99940 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46917 * 174.61081 * 10 9 7 12 12 H 1.09004 * 109.70622 * 314.74230 * 11 10 9 13 13 C 1.53191 * 109.58882 * 194.38434 * 11 10 9 14 14 C 1.53038 * 109.31615 * 185.58167 * 13 11 10 15 15 C 1.53041 * 109.53945 * 61.36310 * 14 13 11 16 16 C 1.53190 * 109.30986 * 298.63686 * 15 14 13 17 17 N 1.46925 * 109.58630 * 75.09518 * 11 10 9 18 18 C 1.34778 * 120.62985 * 353.67201 * 17 11 10 19 19 O 1.21277 * 119.99713 * 354.29205 * 18 17 11 20 20 C 1.50698 * 119.99967 * 174.29912 * 18 17 11 21 21 H 1.09004 * 109.68888 * 320.94365 * 20 18 17 22 22 C 1.53437 * 109.69403 * 200.39926 * 20 18 17 23 23 C 1.53105 * 109.55704 * 190.56231 * 22 20 18 24 24 C 1.53419 * 109.58016 * 70.05642 * 23 22 20 25 25 C 1.50600 * 108.33200 * 310.17277 * 24 23 22 26 26 N 1.32910 * 129.16108 * 196.54485 * 25 24 23 27 27 N 1.29021 * 108.63330 * 179.87684 * 26 25 24 28 28 N 1.29108 * 110.26106 * 0.02916 * 27 26 25 29 29 H 0.97001 * 126.00628 * 180.02562 * 28 27 26 30 30 C 1.34348 * 108.00147 * 0.03704 * 28 27 26 31 31 H 0.97007 * 120.00349 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00208 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47039 * 54.61662 * 10 9 7 34 34 H 1.08995 * 109.47474 * 294.61209 * 10 9 7 35 35 H 1.08997 * 109.49936 * 65.62214 * 13 11 10 36 36 H 1.09005 * 109.51930 * 305.54812 * 13 11 10 37 37 H 1.08996 * 109.45866 * 301.34262 * 14 13 11 38 38 H 1.08999 * 109.46026 * 181.38283 * 14 13 11 39 39 H 1.08995 * 109.49758 * 178.68645 * 15 14 13 40 40 H 1.09004 * 109.52336 * 58.60265 * 15 14 13 41 41 H 1.09001 * 109.58845 * 294.84361 * 16 15 14 42 42 H 1.09001 * 109.58295 * 174.42347 * 16 15 14 43 43 H 1.08999 * 109.45293 * 310.59094 * 22 20 18 44 44 H 1.09004 * 109.45241 * 70.53449 * 22 20 18 45 45 H 1.09005 * 109.45080 * 190.09227 * 23 22 20 46 46 H 1.08998 * 109.44918 * 310.01779 * 23 22 20 47 47 H 1.08999 * 109.69377 * 69.88435 * 24 23 22 48 48 H 1.09000 * 109.69168 * 190.42609 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 6 1.0691 -4.8166 0.1317 12 1 0.3428 -4.5917 0.9127 13 6 1.8271 -6.0990 0.4892 14 6 0.8539 -7.2800 0.4855 15 6 0.2563 -7.4464 -0.9136 16 6 -0.5195 -6.1793 -1.2869 17 7 0.3719 -5.0200 -1.1455 18 6 0.5510 -4.1625 -2.1697 19 8 1.2103 -3.1571 -2.0106 20 6 -0.0681 -4.4529 -3.5126 21 1 0.0024 -5.5194 -3.7266 22 6 0.6632 -3.6575 -4.6020 23 6 -0.1215 -3.7441 -5.9139 24 6 -1.4225 -2.9407 -5.7887 25 6 -2.1155 -3.3564 -4.5179 26 7 -3.3772 -3.1623 -4.1478 27 7 -3.5496 -3.6850 -2.9808 28 7 -2.4503 -4.2177 -2.5627 29 1 -2.3232 -4.6726 -1.7155 30 6 -1.5131 -4.0311 -3.5070 31 1 -0.4851 0.8401 0.0004 32 1 0.3554 -2.3881 -0.0016 33 1 2.7549 -3.6747 0.8351 34 1 2.6102 -3.7567 -0.9371 35 1 2.2701 -5.9956 1.4798 36 1 2.6140 -6.2736 -0.2447 37 1 0.0542 -7.0938 1.2022 38 1 1.3859 -8.1898 0.7636 39 1 -0.4189 -8.3019 -0.9214 40 1 1.0573 -7.6083 -1.6349 41 1 -1.3754 -6.0655 -0.6216 42 1 -0.8634 -6.2522 -2.3187 43 1 0.7457 -2.6145 -4.2964 44 1 1.6604 -4.0731 -4.7473 45 1 0.4811 -3.3352 -6.7250 46 1 -0.3576 -4.7866 -6.1274 47 1 -1.1943 -1.8755 -5.7511 48 1 -2.0662 -3.1484 -6.6435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480357924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:48 Heat of formation + Delta-G solvation = 100.462802 kcal Electronic energy + Delta-G solvation = -31295.264634 eV Core-core repulsion = 27388.604618 eV Total energy + Delta-G solvation = -3906.660016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38716 -40.40217 -37.68662 -36.43600 -34.75829 -33.72463 -32.63957 -32.03354 -30.30238 -30.02351 -29.86964 -26.34133 -24.80880 -24.37185 -23.29423 -22.81334 -22.52536 -21.36213 -20.74298 -19.53233 -18.92386 -18.14106 -17.16875 -16.63040 -15.88568 -15.79659 -15.30942 -14.82939 -14.60448 -14.57339 -14.19251 -14.00098 -13.73282 -13.65632 -13.53701 -13.37021 -13.01752 -12.58112 -12.47756 -12.26527 -12.11644 -11.81014 -11.48370 -11.31348 -11.22916 -11.18621 -11.07417 -10.97621 -10.80744 -10.74061 -10.70633 -10.49097 -10.38584 -10.22213 -9.88722 -9.54594 -9.00061 -8.73518 -8.47050 -8.22552 -6.58411 -5.57228 -2.78608 1.63211 2.62512 2.77949 3.03839 3.11192 3.53304 3.58000 3.60691 4.26647 4.45109 4.51588 4.57745 4.69449 4.72813 4.73782 4.82946 4.93590 4.99284 5.07255 5.14805 5.22254 5.29983 5.32569 5.44639 5.47819 5.57895 5.64566 5.66169 5.77189 5.80932 5.85721 5.86307 5.93201 5.95484 6.01223 6.05460 6.08224 6.22503 6.31955 6.42213 6.45538 6.53499 6.79923 6.89005 7.12911 7.66311 7.85264 8.56924 8.59697 8.67155 9.71838 10.31245 10.65252 11.66440 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.006041 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.170696 B = 4633.731770 C = 6600.829407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.020 4.020 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.211 4.211 8 H 0.065 0.935 9 N -0.698 5.698 10 C 0.161 3.839 11 C 0.141 3.859 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.130 4.130 16 C 0.096 3.904 17 N -0.619 5.619 18 C 0.473 3.527 19 O -0.421 6.421 20 C -0.029 4.029 21 H 0.102 0.898 22 C -0.103 4.103 23 C -0.116 4.116 24 C -0.035 4.035 25 C -0.008 4.008 26 N -0.259 5.259 27 N -0.086 5.086 28 N -0.377 5.377 29 H 0.444 0.556 30 C 0.002 3.998 31 H 0.249 0.751 32 H 0.378 0.622 33 H 0.017 0.983 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 -19.512 -7.681 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.214 4.214 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.343 4.343 8 H 0.083 0.917 9 N -0.341 5.341 10 C 0.033 3.967 11 C 0.039 3.961 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.169 4.169 16 C -0.028 4.028 17 N -0.357 5.357 18 C 0.256 3.744 19 O -0.287 6.287 20 C -0.053 4.053 21 H 0.120 0.880 22 C -0.141 4.141 23 C -0.154 4.154 24 C -0.074 4.074 25 C -0.148 4.148 26 N -0.125 5.125 27 N -0.065 5.065 28 N -0.097 5.097 29 H 0.291 0.709 30 C -0.134 4.134 31 H 0.059 0.941 32 H 0.211 0.789 33 H 0.035 0.965 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.105 0.895 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.212 -18.411 -7.381 19.872 hybrid contribution 1.063 0.314 0.527 1.227 sum -0.149 -18.097 -6.854 19.352 Atomic orbital electron populations 1.69656 1.04978 1.24876 1.59140 1.24614 0.95387 0.97225 1.04216 0.86191 0.78683 0.84869 0.76977 1.20823 1.22219 1.22298 1.19158 0.90677 0.84242 1.40195 0.91707 1.42163 1.05139 0.99496 1.87273 1.20870 0.92831 0.84983 0.98013 1.21547 0.94761 0.95522 0.84305 0.91215 1.21913 0.98206 0.94158 1.02294 1.21506 0.99154 0.98452 0.96492 1.21868 1.00234 0.96691 0.98095 1.21776 0.93055 0.86655 1.01306 1.48045 1.47389 1.26440 1.13868 1.20318 0.84830 0.84275 0.84964 1.91231 1.34858 1.22459 1.80114 1.20064 0.87510 1.01536 0.96183 0.87988 1.21526 0.97933 1.02615 0.92050 1.21635 0.95612 1.00415 0.97700 1.19995 0.94859 1.00930 0.91595 1.21662 0.91291 1.02803 0.99069 1.74785 1.16488 1.16740 1.04496 1.78528 1.07556 1.12405 1.08020 1.44837 1.07931 1.39540 1.17432 0.70922 1.21410 0.93622 1.06823 0.91582 0.94067 0.78876 0.96528 0.94542 0.90695 0.91472 0.91791 0.91762 0.90997 0.91239 0.92007 0.90394 0.88989 0.90365 0.90244 0.91649 0.89530 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.87 13.06 55.49 0.72 -29.14 16 2 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 3 Si 0.90 23.74 29.55 -169.99 -5.02 18.72 16 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.88 7.11 56.52 0.40 -7.47 16 6 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 7 C -0.21 -6.15 9.79 -15.06 -0.15 -6.29 16 8 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -18.04 3.27 -59.91 -0.20 -18.24 16 10 C 0.16 3.26 4.91 -4.04 -0.02 3.24 16 11 C 0.14 2.14 2.90 -67.60 -0.20 1.95 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.13 -1.43 5.32 -26.61 -0.14 -1.57 16 14 C -0.12 -1.02 5.88 -26.69 -0.16 -1.17 16 15 C -0.13 -1.00 6.08 -26.61 -0.16 -1.17 16 16 C 0.10 0.90 4.56 -3.71 -0.02 0.88 16 17 N -0.62 -8.40 2.97 -165.22 -0.49 -8.89 16 18 C 0.47 7.73 6.50 -10.99 -0.07 7.66 16 19 O -0.42 -9.19 9.73 5.56 0.05 -9.14 16 20 C -0.03 -0.38 2.03 -92.78 -0.19 -0.56 16 21 H 0.10 0.99 6.77 -51.93 -0.35 0.64 16 22 C -0.10 -1.30 4.90 -26.45 -0.13 -1.43 16 23 C -0.12 -1.14 5.90 -26.46 -0.16 -1.29 16 24 C -0.03 -0.42 6.30 -27.71 -0.17 -0.59 16 25 C -0.01 -0.13 7.11 -83.10 -0.59 -0.72 16 26 N -0.26 -4.64 12.40 33.17 0.41 -4.23 16 27 N -0.09 -1.50 13.40 60.35 0.81 -0.69 16 28 N -0.38 -5.61 6.58 33.39 0.22 -5.39 16 29 H 0.44 5.57 6.34 -190.07 -1.21 4.36 16 30 C 0.00 0.03 5.92 -82.50 -0.49 -0.46 16 31 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 32 H 0.38 10.54 7.38 -40.82 -0.30 10.24 16 33 H 0.02 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.04 0.80 6.20 -51.93 -0.32 0.48 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.53 7.40 -51.93 -0.38 0.14 16 42 H 0.08 0.64 5.03 -51.93 -0.26 0.38 16 43 H 0.09 1.51 7.48 -51.93 -0.39 1.13 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 47 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -36.54 364.36 -8.99 -45.53 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.25 Total: 8.22 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.74 Total: -2.23 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: 1.48 Total: -66.59 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.05 Total: -9.14 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.02 Total: 18.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.54 -8.99 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480357924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.989 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds