Wall clock time and date at job start Tue Mar 31 2020 18:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00121 * 2 1 4 4 H 1.48506 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47356 * 300.00259 * 3 2 1 6 6 H 1.48497 * 109.46740 * 60.00450 * 3 2 1 7 7 C 1.38816 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99825 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99940 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46917 * 174.61081 * 10 9 7 12 12 H 1.09004 * 109.70622 * 314.74230 * 11 10 9 13 13 C 1.53191 * 109.58882 * 194.38434 * 11 10 9 14 14 C 1.53038 * 109.31615 * 185.58167 * 13 11 10 15 15 C 1.53041 * 109.53945 * 61.36310 * 14 13 11 16 16 C 1.53190 * 109.30986 * 298.63686 * 15 14 13 17 17 N 1.46925 * 109.58630 * 75.09518 * 11 10 9 18 18 C 1.34778 * 120.62985 * 353.67201 * 17 11 10 19 19 O 1.21277 * 119.99713 * 354.29205 * 18 17 11 20 20 C 1.50698 * 119.99967 * 174.29912 * 18 17 11 21 21 H 1.09004 * 109.68888 * 320.94365 * 20 18 17 22 22 C 1.53437 * 109.69403 * 200.39926 * 20 18 17 23 23 C 1.53105 * 109.55704 * 190.56231 * 22 20 18 24 24 C 1.53419 * 109.58016 * 70.05642 * 23 22 20 25 25 C 1.50600 * 108.33200 * 310.17277 * 24 23 22 26 26 N 1.32910 * 129.16108 * 196.54485 * 25 24 23 27 27 N 1.29021 * 108.63330 * 179.87684 * 26 25 24 28 28 N 1.29108 * 110.26106 * 0.02916 * 27 26 25 29 29 H 0.97001 * 126.00628 * 180.02562 * 28 27 26 30 30 C 1.34348 * 108.00147 * 0.03704 * 28 27 26 31 31 H 0.97007 * 120.00349 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00208 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47039 * 54.61662 * 10 9 7 34 34 H 1.08995 * 109.47474 * 294.61209 * 10 9 7 35 35 H 1.08997 * 109.49936 * 65.62214 * 13 11 10 36 36 H 1.09005 * 109.51930 * 305.54812 * 13 11 10 37 37 H 1.08996 * 109.45866 * 301.34262 * 14 13 11 38 38 H 1.08999 * 109.46026 * 181.38283 * 14 13 11 39 39 H 1.08995 * 109.49758 * 178.68645 * 15 14 13 40 40 H 1.09004 * 109.52336 * 58.60265 * 15 14 13 41 41 H 1.09001 * 109.58845 * 294.84361 * 16 15 14 42 42 H 1.09001 * 109.58295 * 174.42347 * 16 15 14 43 43 H 1.08999 * 109.45293 * 310.59094 * 22 20 18 44 44 H 1.09004 * 109.45241 * 70.53449 * 22 20 18 45 45 H 1.09005 * 109.45080 * 190.09227 * 23 22 20 46 46 H 1.08998 * 109.44918 * 310.01779 * 23 22 20 47 47 H 1.08999 * 109.69377 * 69.88435 * 24 23 22 48 48 H 1.09000 * 109.69168 * 190.42609 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 6 1.0691 -4.8166 0.1317 12 1 0.3428 -4.5917 0.9127 13 6 1.8271 -6.0990 0.4892 14 6 0.8539 -7.2800 0.4855 15 6 0.2563 -7.4464 -0.9136 16 6 -0.5195 -6.1793 -1.2869 17 7 0.3719 -5.0200 -1.1455 18 6 0.5510 -4.1625 -2.1697 19 8 1.2103 -3.1571 -2.0106 20 6 -0.0681 -4.4529 -3.5126 21 1 0.0024 -5.5194 -3.7266 22 6 0.6632 -3.6575 -4.6020 23 6 -0.1215 -3.7441 -5.9139 24 6 -1.4225 -2.9407 -5.7887 25 6 -2.1155 -3.3564 -4.5179 26 7 -3.3772 -3.1623 -4.1478 27 7 -3.5496 -3.6850 -2.9808 28 7 -2.4503 -4.2177 -2.5627 29 1 -2.3232 -4.6726 -1.7155 30 6 -1.5131 -4.0311 -3.5070 31 1 -0.4851 0.8401 0.0004 32 1 0.3554 -2.3881 -0.0016 33 1 2.7549 -3.6747 0.8351 34 1 2.6102 -3.7567 -0.9371 35 1 2.2701 -5.9956 1.4798 36 1 2.6140 -6.2736 -0.2447 37 1 0.0542 -7.0938 1.2022 38 1 1.3859 -8.1898 0.7636 39 1 -0.4189 -8.3019 -0.9214 40 1 1.0573 -7.6083 -1.6349 41 1 -1.3754 -6.0655 -0.6216 42 1 -0.8634 -6.2522 -2.3187 43 1 0.7457 -2.6145 -4.2964 44 1 1.6604 -4.0731 -4.7473 45 1 0.4811 -3.3352 -6.7250 46 1 -0.3576 -4.7866 -6.1274 47 1 -1.1943 -1.8755 -5.7511 48 1 -2.0662 -3.1484 -6.6435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480357924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:47 Heat of formation + Delta-G solvation = 74.286984 kcal Electronic energy + Delta-G solvation = -31296.399703 eV Core-core repulsion = 27388.604618 eV Total energy + Delta-G solvation = -3907.795085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.60339 -41.61413 -38.73752 -37.57038 -36.41392 -35.13199 -33.68273 -33.66383 -31.59100 -31.31540 -31.14830 -27.75546 -26.19970 -25.41900 -24.60886 -24.24699 -23.74376 -22.66594 -21.73727 -20.58545 -20.08703 -19.43339 -18.94954 -17.94252 -17.13214 -16.98132 -16.73233 -16.39923 -15.77310 -15.52827 -15.30950 -15.17954 -15.02866 -14.98591 -14.67574 -14.52859 -14.44103 -13.92845 -13.80486 -13.54861 -13.22112 -13.08729 -12.86989 -12.74050 -12.65783 -12.43838 -12.17629 -12.14038 -12.11001 -11.97273 -11.87741 -11.73394 -11.59687 -11.51324 -11.39327 -11.33563 -10.91044 -10.25868 -9.74536 -9.50359 -8.70762 -7.87869 -5.06635 0.41562 1.37538 1.40055 1.42213 1.51369 1.63551 1.81255 1.99374 2.58208 3.17009 3.41964 3.46973 3.52389 3.67610 3.75911 3.82812 3.93699 3.98355 4.04959 4.14683 4.27996 4.29608 4.30761 4.37330 4.43833 4.47879 4.51903 4.59809 4.65066 4.84637 4.94160 4.96248 4.99071 5.03340 5.10287 5.11880 5.13196 5.17677 5.24181 5.29978 5.30902 5.46407 5.48325 5.51441 5.75094 5.76519 6.32379 6.50236 7.31583 7.38373 7.44258 8.21438 8.42349 9.36624 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.006041 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.170696 B = 4633.731770 C = 6600.829407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.086 4.086 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.302 1.302 6 H -0.295 1.295 7 C -0.204 4.204 8 H 0.064 0.936 9 N -0.704 5.704 10 C 0.162 3.838 11 C 0.147 3.853 12 H 0.057 0.943 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.123 4.123 16 C 0.085 3.915 17 N -0.612 5.612 18 C 0.472 3.528 19 O -0.489 6.489 20 C -0.019 4.019 21 H 0.148 0.852 22 C -0.102 4.102 23 C -0.103 4.103 24 C -0.038 4.038 25 C -0.021 4.021 26 N -0.289 5.289 27 N -0.113 5.113 28 N -0.369 5.369 29 H 0.452 0.548 30 C 0.003 3.997 31 H 0.241 0.759 32 H 0.364 0.636 33 H 0.014 0.986 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 -22.899 -8.700 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.277 4.277 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.230 1.230 6 H -0.222 1.222 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.344 5.344 10 C 0.035 3.965 11 C 0.044 3.956 12 H 0.075 0.925 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.161 4.161 16 C -0.036 4.036 17 N -0.349 5.349 18 C 0.257 3.743 19 O -0.360 6.360 20 C -0.043 4.043 21 H 0.166 0.834 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.077 4.077 25 C -0.162 4.162 26 N -0.154 5.154 27 N -0.092 5.092 28 N -0.090 5.090 29 H 0.300 0.700 30 C -0.134 4.134 31 H 0.050 0.950 32 H 0.195 0.805 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.408 -21.889 -8.376 23.440 hybrid contribution 0.861 1.264 0.858 1.753 sum 0.453 -20.625 -7.519 21.957 Atomic orbital electron populations 1.69830 1.06468 1.24820 1.61681 1.25348 0.96215 1.00475 1.05674 0.85181 0.78270 0.80799 0.76333 1.19164 1.22968 1.22236 1.19505 0.90809 0.85739 1.37681 0.91796 1.42254 1.04487 1.00569 1.87085 1.20942 0.93777 0.84815 0.96926 1.21363 0.93835 0.95604 0.84839 0.92542 1.21851 0.98456 0.93035 1.02316 1.21509 0.98641 0.97695 0.97374 1.21865 1.00650 0.96266 0.97359 1.22162 0.92887 0.85773 1.02823 1.48130 1.47147 1.27133 1.12525 1.20952 0.83485 0.83500 0.86359 1.91204 1.38155 1.25150 1.81476 1.20163 0.85776 1.04140 0.94186 0.83427 1.21520 0.99464 0.99743 0.93331 1.21625 0.94021 1.01854 0.96558 1.20193 0.96195 1.00464 0.90868 1.22319 0.90798 1.02430 1.00634 1.74745 1.18037 1.17631 1.04987 1.78462 1.08687 1.13629 1.08379 1.44861 1.07530 1.38930 1.17700 0.69951 1.21725 0.94137 1.06381 0.91183 0.95042 0.80495 0.96853 0.95630 0.90459 0.91367 0.91655 0.89572 0.88008 0.90720 0.90905 0.88733 0.93788 0.88708 0.87971 0.88780 0.91050 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.76 13.06 21.65 0.28 -64.48 16 2 C -0.09 -5.38 5.50 84.86 0.47 -4.92 16 3 Si 0.96 50.40 29.55 68.60 2.03 52.42 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 6 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 7 C -0.20 -12.29 9.79 84.03 0.82 -11.47 16 8 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.70 -37.79 3.27 -343.46 -1.12 -38.91 16 10 C 0.16 6.73 4.91 86.38 0.42 7.15 16 11 C 0.15 4.39 2.90 44.97 0.13 4.52 16 12 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 13 C -0.12 -2.40 5.32 30.67 0.16 -2.24 16 14 C -0.11 -1.52 5.88 30.62 0.18 -1.34 16 15 C -0.12 -1.32 6.08 30.67 0.19 -1.13 16 16 C 0.09 1.32 4.56 86.36 0.39 1.71 16 17 N -0.61 -15.82 2.97 -795.03 -2.36 -18.18 16 18 C 0.47 15.26 6.50 87.66 0.57 15.83 16 19 O -0.49 -22.12 9.73 -3.02 -0.03 -22.15 16 20 C -0.02 -0.46 2.03 -12.19 -0.02 -0.49 16 21 H 0.15 2.21 6.77 -2.39 -0.02 2.20 16 22 C -0.10 -2.46 4.90 30.78 0.15 -2.31 16 23 C -0.10 -1.74 5.90 30.77 0.18 -1.56 16 24 C -0.04 -0.88 6.30 29.96 0.19 -0.69 16 25 C -0.02 -0.65 7.11 41.76 0.30 -0.35 16 26 N -0.29 -10.44 12.40 -48.96 -0.61 -11.05 16 27 N -0.11 -3.98 13.40 37.02 0.50 -3.48 16 28 N -0.37 -10.78 6.58 -48.27 -0.32 -11.10 16 29 H 0.45 10.94 6.34 -219.68 -1.39 9.54 16 30 C 0.00 0.07 5.92 41.52 0.25 0.32 16 31 H 0.24 15.73 8.31 -92.70 -0.77 14.96 16 32 H 0.36 21.25 7.38 -92.71 -0.68 20.56 16 33 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 34 H 0.03 1.15 6.20 -2.39 -0.01 1.14 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.07 1.02 7.40 -2.39 -0.02 1.00 16 42 H 0.09 1.17 5.03 -2.39 -0.01 1.16 16 43 H 0.04 1.50 7.48 -2.39 -0.02 1.48 16 44 H 0.09 1.94 8.14 -2.38 -0.02 1.93 16 45 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 47 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -85.53 364.36 1.66 -83.87 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -1.08 Total: 30.02 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.38 Total: 3.03 kcal Atomic # 7 Polarization: -143.57 SS G_CDS: -3.63 Total: -147.20 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.03 Total: -22.15 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.03 Total: 52.42 kcal Total: -85.53 1.66 -83.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480357924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.159 kcal (2) G-P(sol) polarization free energy of solvation -85.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds