Wall clock time and date at job start Tue Mar 31 2020 17:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00045 * 2 1 4 4 H 1.48501 * 109.47249 * 270.00004 * 3 2 1 5 5 H 1.48502 * 109.47080 * 29.99526 * 3 2 1 6 6 H 1.48501 * 109.47212 * 149.99977 * 3 2 1 7 7 C 1.38813 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00349 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99913 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00106 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47396 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.91367 * 302.55555 * 11 10 9 13 13 C 1.55156 * 111.00271 * 66.45090 * 11 10 9 14 14 C 1.54327 * 102.94352 * 153.58002 * 13 11 10 15 15 N 1.47031 * 107.26879 * 337.80788 * 14 13 11 16 16 C 1.34775 * 125.64581 * 178.89516 * 15 14 13 17 17 O 1.21283 * 119.99741 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00289 * 0.02563 * 16 15 14 19 19 N 1.46503 * 109.46851 * 180.02562 * 18 16 15 20 20 N 1.29103 * 126.00941 * 90.02341 * 19 18 16 21 21 N 1.29018 * 110.26072 * 179.90390 * 20 19 18 22 22 C 1.32909 * 108.63423 * 359.97438 * 21 20 19 23 23 C 1.34397 * 126.00033 * 269.70863 * 19 18 16 24 24 C 1.50532 * 129.25464 * 0.89168 * 23 19 18 25 25 C 1.53442 * 108.38305 * 163.09481 * 24 23 19 26 26 C 1.53104 * 109.54889 * 49.50108 * 25 24 23 27 27 C 1.50593 * 129.16402 * 180.18111 * 22 21 20 28 28 C 1.47425 * 108.70103 * 358.93822 * 15 14 13 29 29 H 0.96991 * 120.00208 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99738 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47556 * 59.99831 * 10 9 7 32 32 H 1.09005 * 109.47172 * 300.00236 * 10 9 7 33 33 H 1.09004 * 110.72307 * 35.21911 * 13 11 10 34 34 H 1.09000 * 110.72519 * 271.94129 * 13 11 10 35 35 H 1.08998 * 109.88371 * 97.22223 * 14 13 11 36 36 H 1.08994 * 109.88463 * 218.39518 * 14 13 11 37 37 H 1.09004 * 109.46389 * 299.99687 * 18 16 15 38 38 H 1.08988 * 109.47096 * 59.99935 * 18 16 15 39 39 H 1.08996 * 109.83813 * 43.26663 * 24 23 19 40 40 H 1.09001 * 109.52408 * 282.73384 * 24 23 19 41 41 H 1.09001 * 109.45203 * 289.47877 * 25 24 23 42 42 H 1.09001 * 109.44711 * 169.52161 * 25 24 23 43 43 H 1.09006 * 109.45542 * 169.89500 * 26 25 24 44 44 H 1.08999 * 109.45248 * 49.96429 * 26 25 24 45 45 H 1.09005 * 109.69178 * 283.17267 * 27 22 21 46 46 H 1.09001 * 109.69166 * 43.74849 * 27 22 21 47 47 H 1.09000 * 110.36875 * 265.29207 * 28 15 14 48 48 H 1.09003 * 110.45479 * 143.01251 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1376 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1914 0.0000 12 1 5.8988 -1.5816 -0.8582 13 6 6.0574 -1.5208 1.3279 14 6 7.5393 -1.9345 1.4485 15 7 7.7229 -3.1432 0.6317 16 6 8.8843 -3.8044 0.4574 17 8 8.9193 -4.7946 -0.2421 18 6 10.1395 -3.3134 1.1315 19 7 11.2565 -4.1963 0.7864 20 7 12.0491 -4.0583 -0.2233 21 7 12.9253 -5.0052 -0.2361 22 6 12.7057 -5.8012 0.8054 23 6 11.6398 -5.2889 1.4687 24 6 11.0434 -5.8936 2.7116 25 6 11.5604 -7.3321 2.8458 26 6 13.0832 -7.3459 2.6885 27 6 13.4528 -7.0372 1.2320 28 6 6.4265 -3.5113 0.0341 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 3.8485 -3.0427 -0.8897 32 1 3.8491 -3.0423 0.8902 33 1 5.4792 -1.9088 2.1665 34 1 5.9638 -0.4368 1.2622 35 1 8.1790 -1.1345 1.0758 36 1 7.7803 -2.1504 2.4893 37 1 10.3601 -2.3003 0.7949 38 1 9.9957 -3.3141 2.2119 39 1 9.9562 -5.8997 2.6349 40 1 11.3470 -5.3116 3.5817 41 1 11.1097 -7.9535 2.0719 42 1 11.2930 -7.7237 3.8273 43 1 13.4673 -8.3293 2.9599 44 1 13.5225 -6.5921 3.3418 45 1 13.1690 -7.8757 0.5959 46 1 14.5259 -6.8630 1.1539 47 1 5.9198 -4.2515 0.6535 48 1 6.5680 -3.8957 -0.9760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491834620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:53 Heat of formation + Delta-G solvation = 73.334517 kcal Electronic energy + Delta-G solvation = -28417.251090 eV Core-core repulsion = 24509.414704 eV Total energy + Delta-G solvation = -3907.836387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.66980 -40.41513 -38.09130 -37.42985 -35.09619 -35.02617 -32.51852 -31.13586 -30.70197 -30.42850 -29.63738 -28.68531 -25.67341 -24.51863 -23.50760 -23.01282 -22.32100 -21.72011 -20.38197 -20.05098 -19.63457 -18.08232 -17.64397 -17.53432 -16.55742 -16.33635 -15.66527 -15.49634 -14.81763 -14.58609 -14.42974 -14.32332 -14.13603 -14.08275 -13.85458 -13.74369 -13.39462 -13.17364 -13.07665 -12.66139 -12.56673 -12.53852 -11.98113 -11.81748 -11.73814 -11.59562 -11.44525 -11.39385 -11.05220 -10.84296 -10.81422 -10.72899 -10.70118 -10.64597 -10.22233 -10.00035 -9.66756 -9.07141 -9.01962 -8.98128 -7.32875 -5.84083 -3.20755 1.21988 1.82662 2.06800 2.33777 2.64164 3.28015 3.32306 3.38744 3.77456 3.83170 4.00621 4.24522 4.34774 4.38657 4.40548 4.48232 4.49834 4.51900 4.58790 4.75739 4.92570 4.98940 4.99391 5.08895 5.13363 5.15452 5.31265 5.40841 5.43723 5.45815 5.53826 5.62398 5.62591 5.66998 5.70717 5.73193 5.74343 5.83982 5.84640 6.00548 6.01479 6.12714 6.24685 6.51030 6.59557 7.05510 7.62620 7.90987 8.29664 8.34387 9.12664 9.84563 10.03619 11.34145 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.002047 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.048808 B =13674.713359 C =13947.879467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.169 3.831 11 C -0.110 4.110 12 H 0.086 0.914 13 C -0.123 4.123 14 C 0.091 3.909 15 N -0.610 5.610 16 C 0.515 3.485 17 O -0.520 6.520 18 C 0.100 3.900 19 N -0.269 5.269 20 N -0.084 5.084 21 N -0.259 5.259 22 C -0.021 4.021 23 C -0.007 4.007 24 C -0.047 4.047 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.033 4.033 28 C 0.115 3.885 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.778 -10.768 10.498 30.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.041 3.959 11 C -0.130 4.130 12 H 0.104 0.896 13 C -0.161 4.161 14 C -0.031 4.031 15 N -0.345 5.345 16 C 0.300 3.700 17 O -0.396 6.396 18 C -0.026 4.026 19 N -0.061 5.061 20 N -0.062 5.062 21 N -0.124 5.124 22 C -0.160 4.160 23 C -0.141 4.141 24 C -0.087 4.087 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.072 4.072 28 C -0.007 4.007 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 26.968 -10.535 8.840 30.272 hybrid contribution -0.035 1.020 0.828 1.314 sum 26.933 -9.515 9.667 30.156 Atomic orbital electron populations 1.69698 1.05112 1.25901 1.57284 1.24691 0.95254 0.97253 1.01944 0.86535 0.79077 0.84962 0.77790 1.21075 1.21701 1.20400 1.19042 0.80499 0.94788 1.43313 0.89171 1.42635 1.04044 1.01999 1.91282 1.20514 0.86577 0.89636 0.99151 1.22641 0.96962 0.95294 0.98094 0.89582 1.22682 0.92580 1.02021 0.98827 1.22295 0.99369 0.86552 0.94910 1.48457 1.08326 1.28491 1.49235 1.19947 0.83572 0.84073 0.82410 1.90824 1.84794 1.25427 1.38534 1.21819 0.82840 0.95149 1.02771 1.46275 1.22017 1.19419 1.18361 1.78607 1.00820 1.20353 1.06399 1.74796 1.17416 1.01487 1.18693 1.21623 0.98670 1.00750 0.94970 1.21776 1.00010 0.91712 1.00585 1.20212 1.00274 0.96522 0.91646 1.21576 0.96009 0.94793 1.02906 1.21637 0.95786 1.02446 0.95837 1.19955 0.99234 0.91910 0.96074 1.22312 0.81490 0.97515 0.99390 0.92981 0.80651 0.95027 0.95084 0.89596 0.89591 0.91006 0.90964 0.84526 0.85019 0.90141 0.89703 0.90996 0.90383 0.90502 0.91397 0.89938 0.89824 0.90560 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 21.17 27.73 -169.99 -4.71 16.46 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 7 C -0.25 -6.71 10.47 -15.06 -0.16 -6.87 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 9 N -0.75 -16.61 5.26 -59.91 -0.31 -16.92 16 10 C 0.17 2.91 5.71 -4.04 -0.02 2.89 16 11 C -0.11 -1.43 3.10 -88.47 -0.27 -1.70 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.12 -1.32 6.13 -24.90 -0.15 -1.47 16 14 C 0.09 0.71 6.49 -3.06 -0.02 0.69 16 15 N -0.61 -6.31 3.33 -170.51 -0.57 -6.88 16 16 C 0.51 5.92 7.92 -10.99 -0.09 5.84 16 17 O -0.52 -8.45 16.69 5.55 0.09 -8.36 16 18 C 0.10 0.81 5.91 -5.19 -0.03 0.77 16 19 N -0.27 -3.12 2.82 -58.43 -0.16 -3.28 16 20 N -0.08 -1.24 13.19 60.35 0.80 -0.44 16 21 N -0.26 -3.82 12.40 33.16 0.41 -3.41 16 22 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 23 C -0.01 -0.08 6.76 -82.49 -0.56 -0.64 16 24 C -0.05 -0.31 5.94 -27.74 -0.16 -0.48 16 25 C -0.11 -0.63 5.90 -26.45 -0.16 -0.78 16 26 C -0.12 -0.61 5.89 -26.47 -0.16 -0.77 16 27 C -0.03 -0.25 6.30 -27.72 -0.17 -0.42 16 28 C 0.12 1.37 6.37 -2.53 -0.02 1.36 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.36 7.66 5.40 -40.82 -0.22 7.44 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.09 0.96 8.01 -51.93 -0.42 0.54 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.13 0.55 7.96 -51.94 -0.41 0.14 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 48 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -36.97 387.50 -8.32 -45.29 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.81 Total: 1.95 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.66 Total: -2.39 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.94 Total: -58.78 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.97 -8.32 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491834620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.620 kcal (2) G-P(sol) polarization free energy of solvation -36.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds