Wall clock time and date at job start Tue Mar 31 2020 17:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00045 * 2 1 4 4 H 1.48501 * 109.47249 * 270.00004 * 3 2 1 5 5 H 1.48502 * 109.47080 * 29.99526 * 3 2 1 6 6 H 1.48501 * 109.47212 * 149.99977 * 3 2 1 7 7 C 1.38813 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00349 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99913 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00106 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47396 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.91367 * 302.55555 * 11 10 9 13 13 C 1.55156 * 111.00271 * 66.45090 * 11 10 9 14 14 C 1.54327 * 102.94352 * 153.58002 * 13 11 10 15 15 N 1.47031 * 107.26879 * 337.80788 * 14 13 11 16 16 C 1.34775 * 125.64581 * 178.89516 * 15 14 13 17 17 O 1.21283 * 119.99741 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00289 * 0.02563 * 16 15 14 19 19 N 1.46503 * 109.46851 * 180.02562 * 18 16 15 20 20 N 1.29103 * 126.00941 * 90.02341 * 19 18 16 21 21 N 1.29018 * 110.26072 * 179.90390 * 20 19 18 22 22 C 1.32909 * 108.63423 * 359.97438 * 21 20 19 23 23 C 1.34397 * 126.00033 * 269.70863 * 19 18 16 24 24 C 1.50532 * 129.25464 * 0.89168 * 23 19 18 25 25 C 1.53442 * 108.38305 * 163.09481 * 24 23 19 26 26 C 1.53104 * 109.54889 * 49.50108 * 25 24 23 27 27 C 1.50593 * 129.16402 * 180.18111 * 22 21 20 28 28 C 1.47425 * 108.70103 * 358.93822 * 15 14 13 29 29 H 0.96991 * 120.00208 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99738 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47556 * 59.99831 * 10 9 7 32 32 H 1.09005 * 109.47172 * 300.00236 * 10 9 7 33 33 H 1.09004 * 110.72307 * 35.21911 * 13 11 10 34 34 H 1.09000 * 110.72519 * 271.94129 * 13 11 10 35 35 H 1.08998 * 109.88371 * 97.22223 * 14 13 11 36 36 H 1.08994 * 109.88463 * 218.39518 * 14 13 11 37 37 H 1.09004 * 109.46389 * 299.99687 * 18 16 15 38 38 H 1.08988 * 109.47096 * 59.99935 * 18 16 15 39 39 H 1.08996 * 109.83813 * 43.26663 * 24 23 19 40 40 H 1.09001 * 109.52408 * 282.73384 * 24 23 19 41 41 H 1.09001 * 109.45203 * 289.47877 * 25 24 23 42 42 H 1.09001 * 109.44711 * 169.52161 * 25 24 23 43 43 H 1.09006 * 109.45542 * 169.89500 * 26 25 24 44 44 H 1.08999 * 109.45248 * 49.96429 * 26 25 24 45 45 H 1.09005 * 109.69178 * 283.17267 * 27 22 21 46 46 H 1.09001 * 109.69166 * 43.74849 * 27 22 21 47 47 H 1.09000 * 110.36875 * 265.29207 * 28 15 14 48 48 H 1.09003 * 110.45479 * 143.01251 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1376 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1914 0.0000 12 1 5.8988 -1.5816 -0.8582 13 6 6.0574 -1.5208 1.3279 14 6 7.5393 -1.9345 1.4485 15 7 7.7229 -3.1432 0.6317 16 6 8.8843 -3.8044 0.4574 17 8 8.9193 -4.7946 -0.2421 18 6 10.1395 -3.3134 1.1315 19 7 11.2565 -4.1963 0.7864 20 7 12.0491 -4.0583 -0.2233 21 7 12.9253 -5.0052 -0.2361 22 6 12.7057 -5.8012 0.8054 23 6 11.6398 -5.2889 1.4687 24 6 11.0434 -5.8936 2.7116 25 6 11.5604 -7.3321 2.8458 26 6 13.0832 -7.3459 2.6885 27 6 13.4528 -7.0372 1.2320 28 6 6.4265 -3.5113 0.0341 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 3.8485 -3.0427 -0.8897 32 1 3.8491 -3.0423 0.8902 33 1 5.4792 -1.9088 2.1665 34 1 5.9638 -0.4368 1.2622 35 1 8.1790 -1.1345 1.0758 36 1 7.7803 -2.1504 2.4893 37 1 10.3601 -2.3003 0.7949 38 1 9.9957 -3.3141 2.2119 39 1 9.9562 -5.8997 2.6349 40 1 11.3470 -5.3116 3.5817 41 1 11.1097 -7.9535 2.0719 42 1 11.2930 -7.7237 3.8273 43 1 13.4673 -8.3293 2.9599 44 1 13.5225 -6.5921 3.3418 45 1 13.1690 -7.8757 0.5959 46 1 14.5259 -6.8630 1.1539 47 1 5.9198 -4.2515 0.6535 48 1 6.5680 -3.8957 -0.9760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491834620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:52 Heat of formation + Delta-G solvation = 46.968140 kcal Electronic energy + Delta-G solvation = -28418.394422 eV Core-core repulsion = 24509.414704 eV Total energy + Delta-G solvation = -3908.979718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.48001 -41.30535 -39.09668 -37.96621 -36.63542 -35.90405 -34.10071 -32.49541 -31.50602 -31.12353 -30.49021 -29.61266 -27.11245 -25.12659 -24.54435 -23.86503 -23.64010 -22.62862 -21.53044 -20.69520 -20.37866 -19.67391 -18.78006 -18.32318 -17.41534 -17.23186 -16.71513 -16.34769 -16.16269 -15.69101 -15.37563 -15.04193 -14.92960 -14.90510 -14.78652 -14.72466 -14.50823 -14.16496 -14.12420 -13.90474 -13.53238 -13.33191 -13.06997 -13.06126 -12.82316 -12.58582 -12.27914 -12.13930 -12.09467 -11.99734 -11.86075 -11.82585 -11.76464 -11.63143 -11.54207 -11.35190 -10.97401 -10.86490 -9.85455 -9.84589 -9.30349 -8.02022 -5.36598 0.40873 1.14267 1.24562 1.38066 1.44172 1.48135 1.51364 1.84142 2.49864 3.08722 3.15089 3.29411 3.40652 3.47239 3.56563 3.69267 3.82260 3.86004 3.87719 3.99391 4.07948 4.10453 4.27238 4.34037 4.41725 4.47041 4.54584 4.57477 4.57709 4.59223 4.76629 4.78806 4.88896 4.92542 5.00304 5.02717 5.07812 5.14306 5.18807 5.19122 5.20901 5.33241 5.37579 5.45248 5.54101 5.75810 6.20986 6.25519 6.78936 7.08515 7.42362 7.82903 8.03759 9.19383 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.002047 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.048808 B =13674.713359 C =13947.879467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.958 3.042 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.238 1.238 7 C -0.237 4.237 8 H 0.053 0.947 9 N -0.753 5.753 10 C 0.166 3.834 11 C -0.102 4.102 12 H 0.084 0.916 13 C -0.123 4.123 14 C 0.094 3.906 15 N -0.605 5.605 16 C 0.514 3.486 17 O -0.579 6.579 18 C 0.098 3.902 19 N -0.270 5.270 20 N -0.128 5.128 21 N -0.299 5.299 22 C -0.041 4.041 23 C -0.003 4.003 24 C -0.047 4.047 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.035 4.035 28 C 0.119 3.881 29 H 0.258 0.742 30 H 0.369 0.631 31 H 0.019 0.981 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.054 0.946 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.398 -9.739 13.482 33.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.162 1.162 7 C -0.368 4.368 8 H 0.071 0.929 9 N -0.399 5.399 10 C 0.040 3.960 11 C -0.121 4.121 12 H 0.103 0.897 13 C -0.161 4.161 14 C -0.027 4.027 15 N -0.338 5.338 16 C 0.302 3.698 17 O -0.458 6.458 18 C -0.025 4.025 19 N -0.062 5.062 20 N -0.105 5.105 21 N -0.163 5.163 22 C -0.182 4.182 23 C -0.137 4.137 24 C -0.086 4.086 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.075 4.075 28 C -0.004 4.004 29 H 0.066 0.934 30 H 0.202 0.798 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.178 0.822 38 H 0.198 0.802 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 29.638 -9.492 11.836 33.296 hybrid contribution -0.948 0.553 -0.119 1.104 sum 28.690 -8.939 11.717 32.254 Atomic orbital electron populations 1.69900 1.07364 1.26773 1.59543 1.25597 0.96178 1.01627 1.02495 0.85365 0.79125 0.79040 0.77983 1.20958 1.22457 1.16175 1.19009 0.82817 0.93384 1.41545 0.92903 1.42567 1.02270 1.04050 1.91004 1.20619 0.89344 0.87610 0.98456 1.22412 0.93620 0.96209 0.99906 0.89733 1.22687 0.94659 1.01959 0.96761 1.22514 0.97549 0.85934 0.96735 1.48462 1.07355 1.29085 1.48934 1.20518 0.84505 0.83197 0.81618 1.90808 1.85683 1.28140 1.41209 1.22222 0.79907 0.95278 1.05118 1.46555 1.22030 1.19995 1.17589 1.78495 1.02248 1.21422 1.08285 1.74715 1.18565 1.02597 1.20458 1.22335 0.99757 1.01596 0.94468 1.22473 0.99217 0.90835 1.01182 1.20453 1.00084 0.97290 0.90749 1.21624 0.95996 0.93934 1.03758 1.21632 0.95708 1.03819 0.93797 1.20134 0.99128 0.90263 0.97928 1.22101 0.82577 0.96937 0.98764 0.93367 0.79753 0.96325 0.94906 0.89945 0.89237 0.88390 0.87157 0.82153 0.80218 0.90077 0.86543 0.92722 0.87751 0.88503 0.90504 0.90301 0.89469 0.90390 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.19 13.97 21.65 0.30 -61.88 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 43.04 27.73 68.60 1.90 44.95 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.24 -9.02 6.52 99.48 0.65 -8.37 16 7 C -0.24 -13.06 10.47 84.03 0.88 -12.18 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 9 N -0.75 -32.44 5.26 -343.45 -1.81 -34.24 16 10 C 0.17 5.66 5.71 86.38 0.49 6.15 16 11 C -0.10 -2.45 3.10 -9.40 -0.03 -2.48 16 12 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 13 C -0.12 -2.16 6.13 31.78 0.19 -1.97 16 14 C 0.09 0.98 6.49 86.73 0.56 1.54 16 15 N -0.61 -10.75 3.33 -811.77 -2.70 -13.45 16 16 C 0.51 10.74 7.92 87.66 0.69 11.43 16 17 O -0.58 -18.78 16.69 -3.04 -0.05 -18.83 16 18 C 0.10 1.24 5.91 85.63 0.51 1.75 16 19 N -0.27 -5.84 2.82 -338.78 -0.95 -6.79 16 20 N -0.13 -3.76 13.19 37.02 0.49 -3.28 16 21 N -0.30 -9.07 12.40 -48.99 -0.61 -9.68 16 22 C -0.04 -0.94 7.11 41.75 0.30 -0.65 16 23 C 0.00 -0.05 6.76 41.50 0.28 0.23 16 24 C -0.05 -0.46 5.94 29.94 0.18 -0.28 16 25 C -0.12 -0.93 5.90 30.78 0.18 -0.75 16 26 C -0.11 -0.85 5.89 30.77 0.18 -0.67 16 27 C -0.04 -0.52 6.30 29.95 0.19 -0.33 16 28 C 0.12 2.71 6.37 86.85 0.55 3.26 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.37 14.68 5.40 -92.71 -0.50 14.18 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.03 1.12 8.11 -2.38 -0.02 1.10 16 33 H 0.08 1.54 8.01 -2.39 -0.02 1.52 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.16 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.18 0.46 7.96 -2.39 -0.02 0.44 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.05 0.64 8.12 -2.39 -0.02 0.62 16 42 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 44 H 0.08 0.48 8.12 -2.39 -0.02 0.46 16 45 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 48 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 Total: -1.00 -87.04 387.50 2.60 -84.43 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.40 Total: 17.12 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 5.63 Total: 1.65 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -5.28 Total: -129.32 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.05 Total: -18.83 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.90 Total: 44.95 kcal Total: -87.04 2.60 -84.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491834620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.400 kcal (2) G-P(sol) polarization free energy of solvation -87.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds