Wall clock time and date at job start Tue Mar 31 2020 17:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.89102 * 51.11671 * 11 10 9 13 13 C 1.55157 * 111.00367 * 287.19545 * 11 10 9 14 14 C 1.54326 * 102.94348 * 206.42616 * 13 11 10 15 15 N 1.47022 * 107.27307 * 22.18831 * 14 13 11 16 16 C 1.34777 * 125.64725 * 181.09668 * 15 14 13 17 17 O 1.21280 * 119.99683 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00246 * 359.96409 * 16 15 14 19 19 N 1.46494 * 109.47205 * 180.02562 * 18 16 15 20 20 N 1.29108 * 126.01289 * 90.02094 * 19 18 16 21 21 N 1.29018 * 110.26336 * 179.91009 * 20 19 18 22 22 C 1.32916 * 108.63312 * 359.97438 * 21 20 19 23 23 C 1.34401 * 126.00620 * 269.71288 * 19 18 16 24 24 C 1.50540 * 129.24965 * 0.88154 * 23 19 18 25 25 C 1.53432 * 108.38279 * 163.09851 * 24 23 19 26 26 C 1.53109 * 109.55233 * 49.50467 * 25 24 23 27 27 C 1.50595 * 129.15966 * 180.18193 * 22 21 20 28 28 C 1.47420 * 108.70115 * 1.06379 * 15 14 13 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 32 32 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 33 33 H 1.08999 * 110.71967 * 324.78352 * 13 11 10 34 34 H 1.08993 * 110.72561 * 88.05612 * 13 11 10 35 35 H 1.09007 * 109.87627 * 262.77336 * 14 13 11 36 36 H 1.09000 * 110.01553 * 141.68530 * 14 13 11 37 37 H 1.09006 * 109.47220 * 299.99724 * 18 16 15 38 38 H 1.09001 * 109.47368 * 59.99272 * 18 16 15 39 39 H 1.08998 * 109.83650 * 43.26602 * 24 23 19 40 40 H 1.09003 * 109.49554 * 282.71636 * 24 23 19 41 41 H 1.09008 * 109.45791 * 289.48649 * 25 24 23 42 42 H 1.08996 * 109.45276 * 169.52965 * 25 24 23 43 43 H 1.08996 * 109.45570 * 169.89504 * 26 25 24 44 44 H 1.08999 * 109.44919 * 49.95761 * 26 25 24 45 45 H 1.08998 * 109.69022 * 283.17896 * 27 22 21 46 46 H 1.09000 * 109.69138 * 43.71367 * 27 22 21 47 47 H 1.09002 * 110.36973 * 217.03363 * 28 15 14 48 48 H 1.08998 * 110.46174 * 94.75872 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8817 -1.4916 0.7938 13 6 6.0849 -1.6685 -1.3827 14 6 7.5684 -2.0913 -1.4277 15 7 7.7343 -3.2037 -0.4807 16 6 8.8912 -3.8408 -0.2122 17 8 8.9109 -4.7490 0.5914 18 6 10.1601 -3.4250 -0.9107 19 7 11.2687 -4.2647 -0.4502 20 7 11.6451 -5.3814 -0.9777 21 7 12.6524 -5.8636 -0.3315 22 6 12.9558 -5.0347 0.6622 23 6 12.0763 -4.0052 0.5923 24 6 12.0561 -2.8406 1.5460 25 6 12.8848 -3.2132 2.7823 26 6 14.2416 -3.7689 2.3413 27 6 14.0473 -5.1460 1.6937 28 6 6.4257 -3.5061 0.1271 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8486 -3.0425 0.8909 32 1 3.8493 -3.0422 -0.8891 33 1 5.5234 -2.1461 -2.1856 34 1 5.9911 -0.5840 -1.4373 35 1 8.2014 -1.2548 -1.1314 36 1 7.8329 -2.4180 -2.4333 37 1 10.0379 -3.5437 -1.9873 38 1 10.3752 -2.3811 -0.6824 39 1 11.0301 -2.6236 1.8432 40 1 12.4915 -1.9664 1.0619 41 1 12.3537 -3.9690 3.3612 42 1 13.0381 -2.3264 3.3973 43 1 14.8942 -3.8646 3.2091 44 1 14.6949 -3.0893 1.6197 45 1 13.7611 -5.8722 2.4544 46 1 14.9743 -5.4617 1.2150 47 1 6.5479 -3.7771 1.1758 48 1 5.9298 -4.3103 -0.4164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491834621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:56 Heat of formation + Delta-G solvation = 73.386756 kcal Electronic energy + Delta-G solvation = -28445.564266 eV Core-core repulsion = 24537.730144 eV Total energy + Delta-G solvation = -3907.834121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.66933 -40.41805 -38.09107 -37.42528 -35.09695 -35.02949 -32.52969 -31.13680 -30.71498 -30.42727 -29.63127 -28.68571 -25.67672 -24.51450 -23.51756 -23.00926 -22.28147 -21.72739 -20.43359 -20.05322 -19.64375 -18.08831 -17.66451 -17.47840 -16.52475 -16.42191 -15.75566 -15.27889 -14.94691 -14.57960 -14.42020 -14.31269 -14.13263 -14.03758 -13.86345 -13.69660 -13.43899 -13.16841 -13.09501 -12.68686 -12.58300 -12.53605 -11.99762 -11.81646 -11.72878 -11.59365 -11.43959 -11.38924 -11.06799 -10.84487 -10.80745 -10.73200 -10.69911 -10.66594 -10.23198 -10.00137 -9.67189 -9.07070 -9.02019 -8.98501 -7.33235 -5.84307 -3.21068 1.21928 1.82609 2.06701 2.33719 2.63932 3.27357 3.31088 3.37903 3.77645 3.83008 4.00557 4.24953 4.34292 4.39230 4.40128 4.48599 4.49581 4.51402 4.59047 4.74594 4.93099 4.97151 4.99489 5.09536 5.13731 5.15766 5.30529 5.41600 5.44288 5.45416 5.54456 5.61178 5.63275 5.67368 5.69870 5.72954 5.74215 5.84058 5.84840 5.99856 6.00723 6.12029 6.24638 6.50914 6.59121 7.05250 7.62489 7.90791 8.29481 8.34104 9.12338 9.84149 10.03165 11.33909 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024296 B = 0.002131 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.153312 B =13134.931579 C =13587.469782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.754 5.754 10 C 0.168 3.832 11 C -0.109 4.109 12 H 0.086 0.914 13 C -0.124 4.124 14 C 0.091 3.909 15 N -0.610 5.610 16 C 0.515 3.485 17 O -0.520 6.520 18 C 0.100 3.900 19 N -0.270 5.270 20 N -0.084 5.084 21 N -0.259 5.259 22 C -0.021 4.021 23 C -0.007 4.007 24 C -0.048 4.048 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.033 4.033 28 C 0.115 3.885 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.701 -2.525 0.765 29.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.041 3.959 11 C -0.129 4.129 12 H 0.104 0.896 13 C -0.161 4.161 14 C -0.031 4.031 15 N -0.345 5.345 16 C 0.300 3.700 17 O -0.396 6.396 18 C -0.026 4.026 19 N -0.061 5.061 20 N -0.062 5.062 21 N -0.124 5.124 22 C -0.160 4.160 23 C -0.140 4.140 24 C -0.087 4.087 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.072 4.072 28 C -0.007 4.007 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 29.252 -4.200 0.044 29.552 hybrid contribution 0.329 2.127 0.531 2.217 sum 29.581 -2.072 0.575 29.659 Atomic orbital electron populations 1.69703 1.05111 1.25890 1.57288 1.24694 0.95256 0.97252 1.01960 0.86529 0.79089 0.84977 0.77740 1.21099 1.20404 1.21706 1.19042 0.80502 0.94801 1.43286 0.89168 1.42638 1.04054 1.01982 1.91288 1.20524 0.86574 0.89633 0.99194 1.22638 0.96914 0.95869 0.97481 0.89594 1.22698 0.92523 1.02501 0.98411 1.22289 0.99375 0.88704 0.92748 1.48449 1.07988 1.35015 1.43065 1.19945 0.83827 0.82939 0.83293 1.90824 1.85192 1.28984 1.34556 1.21817 0.83237 0.94969 1.02552 1.46272 1.22041 1.16718 1.21059 1.78601 1.10573 0.95746 1.21282 1.74796 1.07699 1.23755 1.06141 1.21620 1.01446 0.93123 0.99816 1.21778 0.95533 1.02275 0.94456 1.20217 1.01959 0.93044 0.93459 1.21577 0.95685 1.01903 0.96132 1.21636 0.97198 0.96021 1.00845 1.19954 0.94852 0.98099 0.94265 1.22314 0.81170 0.97932 0.99319 0.92982 0.80679 0.95032 0.95018 0.89633 0.89555 0.91124 0.90888 0.84517 0.85034 0.90132 0.89701 0.90992 0.90378 0.90499 0.91397 0.89939 0.89824 0.90055 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 21.05 27.74 -169.99 -4.71 16.34 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.01 6.52 56.52 0.37 -5.64 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.70 10.47 -15.06 -0.16 -6.86 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 N -0.75 -16.56 5.35 -59.91 -0.32 -16.88 16 10 C 0.17 2.90 5.71 -4.05 -0.02 2.87 16 11 C -0.11 -1.39 3.05 -88.47 -0.27 -1.66 16 12 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.12 -1.30 6.37 -24.90 -0.16 -1.45 16 14 C 0.09 0.70 6.49 -3.06 -0.02 0.68 16 15 N -0.61 -6.29 3.33 -170.52 -0.57 -6.86 16 16 C 0.51 5.92 7.92 -10.99 -0.09 5.83 16 17 O -0.52 -8.46 16.69 5.56 0.09 -8.36 16 18 C 0.10 0.80 5.91 -5.20 -0.03 0.77 16 19 N -0.27 -3.12 2.82 -58.43 -0.16 -3.28 16 20 N -0.08 -1.23 13.19 60.35 0.80 -0.43 16 21 N -0.26 -3.81 12.40 33.16 0.41 -3.40 16 22 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 23 C -0.01 -0.07 6.76 -82.49 -0.56 -0.63 16 24 C -0.05 -0.32 5.94 -27.74 -0.16 -0.49 16 25 C -0.11 -0.65 5.90 -26.45 -0.16 -0.81 16 26 C -0.12 -0.63 5.89 -26.46 -0.16 -0.78 16 27 C -0.03 -0.25 6.30 -27.72 -0.17 -0.43 16 28 C 0.11 1.37 6.38 -2.53 -0.02 1.35 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.36 7.60 5.53 -40.82 -0.23 7.37 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.55 7.97 -51.93 -0.41 0.14 16 33 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.13 0.57 7.96 -51.93 -0.41 0.15 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.49 8.12 -51.92 -0.42 0.07 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 48 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -36.91 387.68 -8.31 -45.23 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.81 Total: 2.05 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.66 Total: -2.42 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.93 Total: -58.68 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.91 -8.31 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491834621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.616 kcal (2) G-P(sol) polarization free energy of solvation -36.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds