Wall clock time and date at job start Tue Mar 31 2020 17:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.89102 * 51.11671 * 11 10 9 13 13 C 1.55157 * 111.00367 * 287.19545 * 11 10 9 14 14 C 1.54326 * 102.94348 * 206.42616 * 13 11 10 15 15 N 1.47022 * 107.27307 * 22.18831 * 14 13 11 16 16 C 1.34777 * 125.64725 * 181.09668 * 15 14 13 17 17 O 1.21280 * 119.99683 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00246 * 359.96409 * 16 15 14 19 19 N 1.46494 * 109.47205 * 180.02562 * 18 16 15 20 20 N 1.29108 * 126.01289 * 90.02094 * 19 18 16 21 21 N 1.29018 * 110.26336 * 179.91009 * 20 19 18 22 22 C 1.32916 * 108.63312 * 359.97438 * 21 20 19 23 23 C 1.34401 * 126.00620 * 269.71288 * 19 18 16 24 24 C 1.50540 * 129.24965 * 0.88154 * 23 19 18 25 25 C 1.53432 * 108.38279 * 163.09851 * 24 23 19 26 26 C 1.53109 * 109.55233 * 49.50467 * 25 24 23 27 27 C 1.50595 * 129.15966 * 180.18193 * 22 21 20 28 28 C 1.47420 * 108.70115 * 1.06379 * 15 14 13 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 32 32 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 33 33 H 1.08999 * 110.71967 * 324.78352 * 13 11 10 34 34 H 1.08993 * 110.72561 * 88.05612 * 13 11 10 35 35 H 1.09007 * 109.87627 * 262.77336 * 14 13 11 36 36 H 1.09000 * 110.01553 * 141.68530 * 14 13 11 37 37 H 1.09006 * 109.47220 * 299.99724 * 18 16 15 38 38 H 1.09001 * 109.47368 * 59.99272 * 18 16 15 39 39 H 1.08998 * 109.83650 * 43.26602 * 24 23 19 40 40 H 1.09003 * 109.49554 * 282.71636 * 24 23 19 41 41 H 1.09008 * 109.45791 * 289.48649 * 25 24 23 42 42 H 1.08996 * 109.45276 * 169.52965 * 25 24 23 43 43 H 1.08996 * 109.45570 * 169.89504 * 26 25 24 44 44 H 1.08999 * 109.44919 * 49.95761 * 26 25 24 45 45 H 1.08998 * 109.69022 * 283.17896 * 27 22 21 46 46 H 1.09000 * 109.69138 * 43.71367 * 27 22 21 47 47 H 1.09002 * 110.36973 * 217.03363 * 28 15 14 48 48 H 1.08998 * 110.46174 * 94.75872 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8817 -1.4916 0.7938 13 6 6.0849 -1.6685 -1.3827 14 6 7.5684 -2.0913 -1.4277 15 7 7.7343 -3.2037 -0.4807 16 6 8.8912 -3.8408 -0.2122 17 8 8.9109 -4.7490 0.5914 18 6 10.1601 -3.4250 -0.9107 19 7 11.2687 -4.2647 -0.4502 20 7 11.6451 -5.3814 -0.9777 21 7 12.6524 -5.8636 -0.3315 22 6 12.9558 -5.0347 0.6622 23 6 12.0763 -4.0052 0.5923 24 6 12.0561 -2.8406 1.5460 25 6 12.8848 -3.2132 2.7823 26 6 14.2416 -3.7689 2.3413 27 6 14.0473 -5.1460 1.6937 28 6 6.4257 -3.5061 0.1271 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8486 -3.0425 0.8909 32 1 3.8493 -3.0422 -0.8891 33 1 5.5234 -2.1461 -2.1856 34 1 5.9911 -0.5840 -1.4373 35 1 8.2014 -1.2548 -1.1314 36 1 7.8329 -2.4180 -2.4333 37 1 10.0379 -3.5437 -1.9873 38 1 10.3752 -2.3811 -0.6824 39 1 11.0301 -2.6236 1.8432 40 1 12.4915 -1.9664 1.0619 41 1 12.3537 -3.9690 3.3612 42 1 13.0381 -2.3264 3.3973 43 1 14.8942 -3.8646 3.2091 44 1 14.6949 -3.0893 1.6197 45 1 13.7611 -5.8722 2.4544 46 1 14.9743 -5.4617 1.2150 47 1 6.5479 -3.7771 1.1758 48 1 5.9298 -4.3103 -0.4164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491834621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:55 Heat of formation + Delta-G solvation = 47.013864 kcal Electronic energy + Delta-G solvation = -28446.707880 eV Core-core repulsion = 24537.730144 eV Total energy + Delta-G solvation = -3908.977736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.48050 -41.30506 -39.08953 -37.96965 -36.63884 -35.90473 -34.10000 -32.50904 -31.51060 -31.12601 -30.47878 -29.61233 -27.11487 -25.12885 -24.56349 -23.81157 -23.64296 -22.63713 -21.57249 -20.70430 -20.38262 -19.66164 -18.78738 -18.27853 -17.45215 -17.24771 -16.73201 -16.38198 -16.00459 -15.76536 -15.34690 -14.98395 -14.96878 -14.90170 -14.77790 -14.73759 -14.49934 -14.22588 -14.11591 -13.91480 -13.53686 -13.31747 -13.08436 -13.04730 -12.82032 -12.58846 -12.28048 -12.12474 -12.08407 -11.99622 -11.86676 -11.83023 -11.76709 -11.63069 -11.54423 -11.35544 -10.96573 -10.86552 -9.85587 -9.84722 -9.30259 -8.01618 -5.36605 0.40661 1.14258 1.24499 1.38781 1.45316 1.47978 1.52708 1.83980 2.50680 3.08966 3.14945 3.29571 3.40391 3.48011 3.57026 3.68965 3.81067 3.85769 3.87900 3.98871 4.07160 4.11056 4.27271 4.34712 4.41388 4.47732 4.54199 4.57192 4.57837 4.59037 4.76660 4.78128 4.88510 4.92494 4.99862 5.03442 5.07440 5.14334 5.18462 5.19672 5.20528 5.33048 5.37481 5.44802 5.53832 5.75893 6.21210 6.25573 6.78910 7.08861 7.42159 7.82727 8.04392 9.19834 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024296 B = 0.002131 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.153312 B =13134.931579 C =13587.469782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.237 1.237 6 H -0.299 1.299 7 C -0.238 4.238 8 H 0.051 0.949 9 N -0.752 5.752 10 C 0.165 3.835 11 C -0.098 4.098 12 H 0.092 0.908 13 C -0.123 4.123 14 C 0.093 3.907 15 N -0.605 5.605 16 C 0.514 3.486 17 O -0.579 6.579 18 C 0.099 3.901 19 N -0.270 5.270 20 N -0.127 5.127 21 N -0.299 5.299 22 C -0.041 4.041 23 C -0.003 4.003 24 C -0.047 4.047 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.035 4.035 28 C 0.118 3.882 29 H 0.258 0.742 30 H 0.370 0.630 31 H 0.019 0.981 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.054 0.946 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.149 0.697 0.470 33.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.260 4.260 3 Si 0.788 3.212 4 H -0.206 1.206 5 H -0.161 1.161 6 H -0.226 1.226 7 C -0.369 4.369 8 H 0.069 0.931 9 N -0.398 5.398 10 C 0.039 3.961 11 C -0.118 4.118 12 H 0.110 0.890 13 C -0.161 4.161 14 C -0.028 4.028 15 N -0.338 5.338 16 C 0.302 3.698 17 O -0.459 6.459 18 C -0.025 4.025 19 N -0.062 5.062 20 N -0.104 5.104 21 N -0.163 5.163 22 C -0.181 4.181 23 C -0.137 4.137 24 C -0.086 4.086 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.074 4.074 28 C -0.005 4.005 29 H 0.066 0.934 30 H 0.203 0.797 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.180 0.820 38 H 0.197 0.803 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 32.743 -0.991 -0.296 32.760 hybrid contribution -0.844 0.999 0.661 1.466 sum 31.899 0.008 0.365 31.902 Atomic orbital electron populations 1.69913 1.07451 1.26814 1.59493 1.25636 0.96210 1.01784 1.02401 0.85322 0.79070 0.78762 0.78094 1.20645 1.16118 1.22580 1.18999 0.82871 0.93350 1.41681 0.93128 1.42549 1.02233 1.04028 1.91005 1.20628 0.89581 0.87622 0.98310 1.22400 0.93288 0.96466 0.99624 0.88977 1.22704 0.94458 1.02850 0.96114 1.22514 0.97825 0.88827 0.93595 1.48455 1.06951 1.35449 1.42974 1.20523 0.84840 0.81960 0.82526 1.90808 1.86101 1.31617 1.37331 1.22221 0.80439 0.96488 1.03369 1.46553 1.22428 1.16158 1.21037 1.78490 1.11556 0.97499 1.22810 1.74717 1.08590 1.25307 1.07691 1.22326 1.02786 0.93112 0.99901 1.22460 0.94362 1.02851 0.94056 1.20449 1.02488 0.92522 0.93125 1.21623 0.95397 1.02519 0.95798 1.21630 0.97453 0.94306 1.01552 1.20131 0.93896 0.99976 0.93443 1.22098 0.82318 0.97361 0.98733 0.93360 0.79657 0.96256 0.95367 0.90539 0.88727 0.87376 0.88183 0.82037 0.80297 0.90149 0.86553 0.92742 0.87811 0.88517 0.90487 0.90308 0.89430 0.91424 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.26 13.97 21.65 0.30 -61.96 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.96 42.58 27.74 68.60 1.90 44.49 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.24 -8.83 6.52 99.48 0.65 -8.19 16 6 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -13.15 10.47 84.03 0.88 -12.27 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -32.24 5.35 -343.47 -1.84 -34.08 16 10 C 0.17 5.63 5.71 86.38 0.49 6.12 16 11 C -0.10 -2.29 3.05 -9.40 -0.03 -2.32 16 12 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 13 C -0.12 -2.13 6.37 31.78 0.20 -1.93 16 14 C 0.09 0.96 6.49 86.73 0.56 1.52 16 15 N -0.61 -10.73 3.33 -811.79 -2.70 -13.43 16 16 C 0.51 10.73 7.92 87.66 0.69 11.43 16 17 O -0.58 -18.81 16.69 -3.03 -0.05 -18.86 16 18 C 0.10 1.24 5.91 85.63 0.51 1.75 16 19 N -0.27 -5.83 2.82 -338.79 -0.95 -6.78 16 20 N -0.13 -3.71 13.19 37.02 0.49 -3.22 16 21 N -0.30 -9.03 12.40 -48.99 -0.61 -9.63 16 22 C -0.04 -0.94 7.11 41.75 0.30 -0.64 16 23 C 0.00 -0.06 6.76 41.50 0.28 0.23 16 24 C -0.05 -0.48 5.94 29.94 0.18 -0.30 16 25 C -0.12 -0.98 5.90 30.78 0.18 -0.79 16 26 C -0.11 -0.87 5.89 30.77 0.18 -0.69 16 27 C -0.04 -0.52 6.30 29.95 0.19 -0.33 16 28 C 0.12 2.69 6.38 86.86 0.55 3.25 16 29 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.37 14.48 5.53 -92.71 -0.51 13.97 16 31 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.03 0.99 7.97 -2.39 -0.02 0.97 16 33 H 0.08 1.48 7.91 -2.39 -0.02 1.46 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 37 H 0.16 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.18 0.48 7.96 -2.39 -0.02 0.46 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.05 0.66 8.12 -2.38 -0.02 0.64 16 42 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 45 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 1.73 8.04 -2.39 -0.02 1.71 16 48 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 Total: -1.00 -87.14 387.68 2.57 -84.57 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.39 Total: 17.40 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.64 Total: 1.52 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -5.31 Total: -129.11 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.90 Total: 44.49 kcal Total: -87.14 2.57 -84.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491834621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.581 kcal (2) G-P(sol) polarization free energy of solvation -87.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds