Wall clock time and date at job start Tue Mar 31 2020 17:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99621 * 2 1 4 4 H 1.48497 * 109.46877 * 239.99420 * 3 2 1 5 5 H 1.48496 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46677 * 120.00086 * 3 2 1 7 7 C 1.38811 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99850 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.64693 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.26793 * 178.91954 * 10 9 7 12 12 C 1.55157 * 102.94180 * 337.80234 * 11 10 9 13 13 H 1.08993 * 111.01143 * 277.39091 * 12 11 10 14 14 C 1.53001 * 111.00002 * 153.57665 * 12 11 10 15 15 C 1.53003 * 109.47172 * 175.00251 * 14 12 11 16 16 N 1.46496 * 109.47051 * 179.97438 * 15 14 12 17 17 C 1.34780 * 119.99691 * 180.02562 * 16 15 14 18 18 O 1.21284 * 120.00110 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99879 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.72133 * 60.56300 * 19 17 16 21 21 C 1.53437 * 109.68926 * 181.12930 * 19 17 16 22 22 C 1.53110 * 109.55123 * 169.43418 * 21 19 17 23 23 C 1.53430 * 109.57404 * 289.93833 * 22 21 19 24 24 C 1.50597 * 108.32998 * 49.84368 * 23 22 21 25 25 N 1.32907 * 129.16212 * 163.13610 * 24 23 22 26 26 N 1.29029 * 108.63630 * 179.97438 * 25 24 23 27 27 N 1.29108 * 110.25178 * 0.35032 * 26 25 24 28 28 H 0.97008 * 125.99991 * 179.69628 * 27 26 25 29 29 C 1.34393 * 107.99288 * 359.71814 * 27 26 25 30 30 C 1.47422 * 125.65018 * 179.97438 * 9 7 2 31 31 H 0.97000 * 119.99951 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.88199 * 59.50536 * 10 9 7 33 33 H 1.09001 * 109.88566 * 298.33255 * 10 9 7 34 34 H 1.09008 * 110.71728 * 219.44595 * 11 10 9 35 35 H 1.08999 * 110.87272 * 96.24320 * 11 10 9 36 36 H 1.08997 * 109.47443 * 55.00534 * 14 12 11 37 37 H 1.08998 * 109.47481 * 295.00364 * 14 12 11 38 38 H 1.09001 * 109.46956 * 60.00274 * 15 14 12 39 39 H 1.08998 * 109.47010 * 300.00402 * 15 14 12 40 40 H 0.96999 * 120.00204 * 0.02562 * 16 15 14 41 41 H 1.08997 * 109.45962 * 289.45202 * 21 19 17 42 42 H 1.09000 * 109.45739 * 49.42822 * 21 19 17 43 43 H 1.08994 * 109.45434 * 49.98144 * 22 21 19 44 44 H 1.08997 * 109.45096 * 169.91561 * 22 21 19 45 45 H 1.08998 * 109.71101 * 290.12487 * 23 22 21 46 46 H 1.08997 * 109.67950 * 169.53774 * 23 22 21 47 47 H 1.09007 * 110.36383 * 85.30951 * 30 9 7 48 48 H 1.09003 * 110.36425 * 322.99335 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4484 -4.0441 -0.0279 12 6 0.8524 -4.6559 -0.6119 13 1 0.8579 -4.5965 -1.7002 14 6 1.0371 -6.1008 -0.1436 15 6 2.2585 -6.7091 -0.8359 16 7 2.4356 -8.0923 -0.3870 17 6 3.4558 -8.8309 -0.8668 18 8 4.2268 -8.3507 -1.6704 19 6 3.6378 -10.2541 -0.4055 20 1 2.7567 -10.8406 -0.6658 21 6 4.8785 -10.8598 -1.0749 22 6 5.2140 -12.2000 -0.4147 23 6 5.7381 -11.9559 1.0065 24 6 4.7778 -11.0367 1.7141 25 7 4.6513 -10.7951 3.0149 26 7 3.7017 -9.9382 3.1847 27 7 3.1889 -9.6080 2.0467 28 1 2.4591 -8.9839 1.9098 29 6 3.8436 -10.2813 1.0854 30 6 1.9335 -3.7311 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5569 -2.0520 -0.8843 33 1 -0.5550 -2.0847 0.9012 34 1 -1.2980 -4.2513 -0.6787 35 1 -0.6340 -4.4207 0.9780 36 1 0.1497 -6.6810 -0.3965 37 1 1.1860 -6.1166 0.9360 38 1 3.1459 -6.1289 -0.5830 39 1 2.1095 -6.6932 -1.9155 40 1 1.8188 -8.4765 0.2554 41 1 4.6789 -11.0172 -2.1348 42 1 5.7215 -10.1783 -0.9613 43 1 4.3169 -12.8173 -0.3699 44 1 5.9777 -12.7119 -1.0002 45 1 6.7236 -11.4926 0.9604 46 1 5.8017 -12.9032 1.5420 47 1 2.1660 -4.0423 1.0191 48 1 2.8333 -3.7403 -0.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494041552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:13 Heat of formation + Delta-G solvation = 66.276652 kcal Electronic energy + Delta-G solvation = -28534.177984 eV Core-core repulsion = 24626.035546 eV Total energy + Delta-G solvation = -3908.142439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.93928 -40.30929 -38.00715 -37.21997 -35.53130 -34.38203 -33.08180 -31.40006 -30.60804 -30.54200 -29.03353 -26.87756 -25.31211 -24.53880 -23.61907 -23.09989 -22.26557 -21.40305 -20.07316 -20.02328 -19.62403 -18.65180 -17.53753 -16.94672 -16.66970 -16.11303 -16.04338 -15.45564 -14.97553 -14.64649 -14.44294 -14.36552 -14.26716 -14.07317 -13.69057 -13.54184 -12.71669 -12.58069 -12.35288 -12.12664 -12.00330 -11.88130 -11.82623 -11.75182 -11.63475 -11.51835 -11.23950 -11.09820 -10.90757 -10.78903 -10.77507 -10.38103 -10.20425 -10.05332 -9.92854 -9.82923 -9.65067 -9.45609 -9.30503 -8.60547 -6.83930 -5.71808 -3.05282 1.04900 2.00651 2.13637 2.28644 2.69200 3.40530 3.44630 3.45862 3.75698 3.86440 4.11328 4.23712 4.39771 4.49554 4.64535 4.71638 4.77780 4.81284 4.92626 4.94605 5.10112 5.13522 5.40740 5.42764 5.45918 5.50079 5.54443 5.55703 5.58014 5.65272 5.73487 5.79955 5.84499 5.89541 5.93443 6.08444 6.12102 6.31479 6.31827 6.49139 6.52583 6.66797 6.90086 6.95938 7.55035 7.61032 7.71612 7.81402 8.02952 8.25744 9.21936 9.82285 10.48149 11.39924 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.002163 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.711938 B =12943.805884 C =13036.203663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.077 0.923 14 C -0.118 4.118 15 C 0.115 3.885 16 N -0.734 5.734 17 C 0.513 3.487 18 O -0.516 6.516 19 C -0.031 4.031 20 H 0.120 0.880 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.037 4.037 24 C -0.002 4.002 25 N -0.256 5.256 26 N -0.076 5.076 27 N -0.380 5.380 28 H 0.444 0.556 29 C -0.016 4.016 30 C 0.140 3.860 31 H 0.252 0.748 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.388 0.612 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.016 0.984 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 -27.713 -1.609 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.120 4.120 13 H 0.095 0.905 14 C -0.157 4.157 15 C -0.007 4.007 16 N -0.387 5.387 17 C 0.297 3.703 18 O -0.390 6.390 19 C -0.054 4.054 20 H 0.138 0.862 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.076 4.076 24 C -0.142 4.142 25 N -0.122 5.122 26 N -0.055 5.055 27 N -0.100 5.100 28 H 0.291 0.709 29 C -0.151 4.151 30 C 0.014 3.986 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.222 0.778 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.034 0.966 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.576 -26.956 -0.606 27.349 hybrid contribution -0.582 1.208 -0.740 1.531 sum 3.994 -25.749 -1.345 26.091 Atomic orbital electron populations 1.69959 1.04881 1.25125 1.57127 1.24806 0.95739 0.97693 1.02270 0.86193 0.78456 0.83154 0.77939 1.21141 1.21577 1.21161 1.19023 0.90416 0.82487 1.43807 0.90546 1.44473 1.01721 0.99908 1.87161 1.21138 0.84362 0.88288 1.00999 1.22907 0.95843 0.99583 0.99334 1.22264 0.97831 0.91652 1.00279 0.90464 1.21785 0.96423 0.97035 1.00429 1.21617 0.99648 0.79662 0.99812 1.46263 1.30481 1.15094 1.46821 1.20402 0.80879 0.87293 0.81677 1.90767 1.43154 1.72198 1.32872 1.20076 1.03281 0.94911 0.87174 0.86237 1.21495 0.95733 0.96707 0.99779 1.21681 1.02155 0.96989 0.94896 1.20054 0.96177 0.97436 0.93956 1.21751 0.99997 1.02341 0.90118 1.74888 1.11049 1.09998 1.16288 1.78654 1.08106 1.12840 1.05858 1.44855 1.27608 1.32278 1.05277 0.70902 1.21444 0.99664 1.01120 0.92918 1.21605 0.94282 0.86242 0.96516 0.93729 0.93644 0.94055 0.92312 0.92594 0.91469 0.91379 0.90578 0.90823 0.77818 0.89550 0.89804 0.91149 0.89796 0.89438 0.89369 0.96634 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.31 10.31 55.49 0.57 -26.73 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.51 3.39 -170.08 -0.58 -16.09 16 10 C 0.18 4.25 5.37 -3.06 -0.02 4.23 16 11 C -0.14 -2.41 6.42 -24.89 -0.16 -2.57 16 12 C -0.10 -1.58 3.00 -88.48 -0.27 -1.84 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.12 -1.28 4.84 -26.73 -0.13 -1.41 16 15 C 0.12 1.24 5.58 -4.04 -0.02 1.22 16 16 N -0.73 -6.01 5.12 -60.29 -0.31 -6.32 16 17 C 0.51 4.95 7.14 -10.98 -0.08 4.87 16 18 O -0.52 -7.11 15.84 5.55 0.09 -7.03 16 19 C -0.03 -0.20 2.91 -92.78 -0.27 -0.47 16 20 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 21 C -0.10 -0.61 4.66 -26.45 -0.12 -0.73 16 22 C -0.12 -0.52 5.90 -26.45 -0.16 -0.67 16 23 C -0.04 -0.23 6.30 -27.71 -0.17 -0.40 16 24 C 0.00 -0.02 7.11 -83.12 -0.59 -0.61 16 25 N -0.26 -3.13 12.40 33.16 0.41 -2.72 16 26 N -0.08 -0.89 13.40 60.35 0.81 -0.08 16 27 N -0.38 -3.23 6.76 33.39 0.23 -3.01 16 28 H 0.44 2.56 6.82 -190.07 -1.30 1.26 16 29 C -0.02 -0.13 6.38 -82.50 -0.53 -0.66 16 30 C 0.14 2.80 6.18 -2.54 -0.02 2.79 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 33 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 34 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.71 7.96 -51.93 -0.41 0.29 16 38 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.39 1.99 6.51 -40.82 -0.27 1.72 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.68 7.75 -51.93 -0.40 0.27 16 43 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.02 0.32 7.91 -51.93 -0.41 -0.09 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -35.63 378.95 -9.45 -45.08 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.58 Total: -2.92 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.78 Total: -3.23 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 1.13 Total: -54.94 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: 0.09 Total: -7.03 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.63 -9.45 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494041552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.359 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds