Wall clock time and date at job start Tue Mar 31 2020 17:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99621 * 2 1 4 4 H 1.48497 * 109.46877 * 239.99420 * 3 2 1 5 5 H 1.48496 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46677 * 120.00086 * 3 2 1 7 7 C 1.38811 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99850 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.64693 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.26793 * 178.91954 * 10 9 7 12 12 C 1.55157 * 102.94180 * 337.80234 * 11 10 9 13 13 H 1.08993 * 111.01143 * 277.39091 * 12 11 10 14 14 C 1.53001 * 111.00002 * 153.57665 * 12 11 10 15 15 C 1.53003 * 109.47172 * 175.00251 * 14 12 11 16 16 N 1.46496 * 109.47051 * 179.97438 * 15 14 12 17 17 C 1.34780 * 119.99691 * 180.02562 * 16 15 14 18 18 O 1.21284 * 120.00110 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99879 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.72133 * 60.56300 * 19 17 16 21 21 C 1.53437 * 109.68926 * 181.12930 * 19 17 16 22 22 C 1.53110 * 109.55123 * 169.43418 * 21 19 17 23 23 C 1.53430 * 109.57404 * 289.93833 * 22 21 19 24 24 C 1.50597 * 108.32998 * 49.84368 * 23 22 21 25 25 N 1.32907 * 129.16212 * 163.13610 * 24 23 22 26 26 N 1.29029 * 108.63630 * 179.97438 * 25 24 23 27 27 N 1.29108 * 110.25178 * 0.35032 * 26 25 24 28 28 H 0.97008 * 125.99991 * 179.69628 * 27 26 25 29 29 C 1.34393 * 107.99288 * 359.71814 * 27 26 25 30 30 C 1.47422 * 125.65018 * 179.97438 * 9 7 2 31 31 H 0.97000 * 119.99951 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.88199 * 59.50536 * 10 9 7 33 33 H 1.09001 * 109.88566 * 298.33255 * 10 9 7 34 34 H 1.09008 * 110.71728 * 219.44595 * 11 10 9 35 35 H 1.08999 * 110.87272 * 96.24320 * 11 10 9 36 36 H 1.08997 * 109.47443 * 55.00534 * 14 12 11 37 37 H 1.08998 * 109.47481 * 295.00364 * 14 12 11 38 38 H 1.09001 * 109.46956 * 60.00274 * 15 14 12 39 39 H 1.08998 * 109.47010 * 300.00402 * 15 14 12 40 40 H 0.96999 * 120.00204 * 0.02562 * 16 15 14 41 41 H 1.08997 * 109.45962 * 289.45202 * 21 19 17 42 42 H 1.09000 * 109.45739 * 49.42822 * 21 19 17 43 43 H 1.08994 * 109.45434 * 49.98144 * 22 21 19 44 44 H 1.08997 * 109.45096 * 169.91561 * 22 21 19 45 45 H 1.08998 * 109.71101 * 290.12487 * 23 22 21 46 46 H 1.08997 * 109.67950 * 169.53774 * 23 22 21 47 47 H 1.09007 * 110.36383 * 85.30951 * 30 9 7 48 48 H 1.09003 * 110.36425 * 322.99335 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4484 -4.0441 -0.0279 12 6 0.8524 -4.6559 -0.6119 13 1 0.8579 -4.5965 -1.7002 14 6 1.0371 -6.1008 -0.1436 15 6 2.2585 -6.7091 -0.8359 16 7 2.4356 -8.0923 -0.3870 17 6 3.4558 -8.8309 -0.8668 18 8 4.2268 -8.3507 -1.6704 19 6 3.6378 -10.2541 -0.4055 20 1 2.7567 -10.8406 -0.6658 21 6 4.8785 -10.8598 -1.0749 22 6 5.2140 -12.2000 -0.4147 23 6 5.7381 -11.9559 1.0065 24 6 4.7778 -11.0367 1.7141 25 7 4.6513 -10.7951 3.0149 26 7 3.7017 -9.9382 3.1847 27 7 3.1889 -9.6080 2.0467 28 1 2.4591 -8.9839 1.9098 29 6 3.8436 -10.2813 1.0854 30 6 1.9335 -3.7311 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5569 -2.0520 -0.8843 33 1 -0.5550 -2.0847 0.9012 34 1 -1.2980 -4.2513 -0.6787 35 1 -0.6340 -4.4207 0.9780 36 1 0.1497 -6.6810 -0.3965 37 1 1.1860 -6.1166 0.9360 38 1 3.1459 -6.1289 -0.5830 39 1 2.1095 -6.6932 -1.9155 40 1 1.8188 -8.4765 0.2554 41 1 4.6789 -11.0172 -2.1348 42 1 5.7215 -10.1783 -0.9613 43 1 4.3169 -12.8173 -0.3699 44 1 5.9777 -12.7119 -1.0002 45 1 6.7236 -11.4926 0.9604 46 1 5.8017 -12.9032 1.5420 47 1 2.1660 -4.0423 1.0191 48 1 2.8333 -3.7403 -0.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494041552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:12 Heat of formation + Delta-G solvation = 40.673404 kcal Electronic energy + Delta-G solvation = -28535.288225 eV Core-core repulsion = 24626.035546 eV Total energy + Delta-G solvation = -3909.252679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.64295 -41.09124 -39.46928 -37.84302 -36.56864 -35.23112 -34.65023 -32.64651 -31.57816 -31.17146 -30.63576 -28.28894 -26.72339 -25.59693 -24.45403 -23.78665 -23.27265 -22.19721 -21.87098 -20.94949 -20.53775 -19.35702 -18.89361 -18.21791 -17.43510 -17.03663 -16.92324 -16.72446 -16.40085 -15.84250 -15.59185 -15.25746 -14.98908 -14.88418 -14.70216 -14.41019 -14.11492 -13.86297 -13.68973 -13.37283 -13.19386 -13.09315 -12.82367 -12.69731 -12.67377 -12.44861 -12.31783 -12.24221 -12.07572 -12.01749 -11.83399 -11.70722 -11.55981 -11.42432 -11.38698 -11.36109 -11.00882 -10.72708 -10.27415 -9.98590 -8.91598 -7.88254 -5.23508 0.36125 1.28152 1.41900 1.42890 1.45189 1.51580 1.64140 1.98045 2.46690 3.16668 3.27596 3.29429 3.52781 3.62745 3.70564 3.78823 3.90995 3.93345 4.11340 4.16855 4.26858 4.30134 4.31598 4.34568 4.45126 4.57577 4.58443 4.66024 4.73667 4.86369 4.96305 4.97674 4.99433 5.08009 5.12168 5.12928 5.19525 5.21484 5.26913 5.33058 5.41464 5.46514 5.49923 5.68812 5.73691 5.77234 6.18493 6.29104 7.01286 7.08558 7.29251 7.76679 8.40283 9.21719 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.002163 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.711938 B =12943.805884 C =13036.203663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.631 5.631 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.084 4.084 13 H 0.074 0.926 14 C -0.103 4.103 15 C 0.121 3.879 16 N -0.720 5.720 17 C 0.512 3.488 18 O -0.561 6.561 19 C -0.020 4.020 20 H 0.160 0.840 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.040 4.040 24 C -0.014 4.014 25 N -0.291 5.291 26 N -0.108 5.108 27 N -0.368 5.368 28 H 0.455 0.545 29 C -0.008 4.008 30 C 0.132 3.868 31 H 0.247 0.753 32 H 0.007 0.993 33 H 0.002 0.998 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.407 0.593 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.022 0.978 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 -30.476 -2.205 30.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.104 4.104 13 H 0.092 0.908 14 C -0.141 4.141 15 C -0.002 4.002 16 N -0.374 5.374 17 C 0.297 3.703 18 O -0.439 6.439 19 C -0.043 4.043 20 H 0.177 0.823 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.079 4.079 24 C -0.154 4.154 25 N -0.156 5.156 26 N -0.087 5.087 27 N -0.090 5.090 28 H 0.304 0.696 29 C -0.144 4.144 30 C 0.008 3.992 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.243 0.757 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.040 0.960 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.246 -29.760 -1.161 30.084 hybrid contribution -0.440 2.077 -0.574 2.200 sum 3.806 -27.683 -1.734 27.997 Atomic orbital electron populations 1.70189 1.06214 1.25332 1.58236 1.25660 0.96681 1.01036 1.02638 0.85167 0.77200 0.78856 0.78220 1.20310 1.21763 1.20387 1.19414 0.90884 0.84105 1.43144 0.90476 1.44834 1.02729 1.01229 1.86992 1.20954 0.83516 0.92702 0.97349 1.22766 0.97459 0.94400 1.01417 1.22138 0.94714 0.93737 0.99821 0.90768 1.21645 0.97809 0.93742 1.00935 1.21357 0.98564 0.80718 0.99580 1.46060 1.30581 1.13996 1.46730 1.20928 0.80183 0.88280 0.80863 1.90758 1.44758 1.73261 1.35078 1.20191 1.05251 0.93228 0.85660 0.82326 1.21529 0.94593 0.97105 1.00614 1.21662 1.03419 0.96134 0.93437 1.20229 0.95500 0.97200 0.94974 1.22341 1.00633 1.02975 0.89489 1.74848 1.11818 1.10868 1.18045 1.78590 1.09064 1.13888 1.07143 1.44851 1.27485 1.31966 1.04735 0.69618 1.21693 0.98963 1.00298 0.93474 1.21843 0.95471 0.84866 0.97065 0.94378 0.97455 0.97927 0.89826 0.90518 0.87914 0.90158 0.93193 0.91373 0.75653 0.88492 0.92252 0.89537 0.87890 0.89641 0.88409 0.95982 0.95051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.31 10.31 21.65 0.22 -58.09 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 3 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.25 -14.26 10.28 84.03 0.86 -13.40 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.63 -33.02 3.39 -692.01 -2.35 -35.37 16 10 C 0.18 8.85 5.37 86.73 0.47 9.32 16 11 C -0.12 -4.02 6.42 31.78 0.20 -3.82 16 12 C -0.08 -2.47 3.00 -9.41 -0.03 -2.50 16 13 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.10 -1.85 4.84 30.60 0.15 -1.70 16 15 C 0.12 2.34 5.58 86.38 0.48 2.82 16 16 N -0.72 -9.66 5.12 -463.05 -2.37 -12.03 16 17 C 0.51 8.74 7.14 87.66 0.63 9.37 16 18 O -0.56 -14.96 15.84 -3.04 -0.05 -15.01 16 19 C -0.02 -0.20 2.91 -12.19 -0.04 -0.24 16 20 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 21 C -0.10 -0.99 4.66 30.78 0.14 -0.84 16 22 C -0.11 -0.60 5.90 30.78 0.18 -0.42 16 23 C -0.04 -0.42 6.30 29.96 0.19 -0.23 16 24 C -0.01 -0.24 7.11 41.75 0.30 0.06 16 25 N -0.29 -6.96 12.40 -48.99 -0.61 -7.56 16 26 N -0.11 -2.47 13.40 37.02 0.50 -1.97 16 27 N -0.37 -5.59 6.76 -48.28 -0.33 -5.91 16 28 H 0.45 4.07 6.82 -219.67 -1.50 2.57 16 29 C -0.01 -0.11 6.38 41.50 0.26 0.16 16 30 C 0.13 5.27 6.18 86.85 0.54 5.81 16 31 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.01 0.40 7.38 -2.39 -0.02 0.38 16 33 H 0.00 0.14 7.51 -2.39 -0.02 0.12 16 34 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.08 2.24 8.04 -2.39 -0.02 2.22 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.32 7.96 -2.39 -0.02 1.30 16 38 H 0.05 1.25 7.75 -2.39 -0.02 1.23 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.41 2.52 6.51 -92.71 -0.60 1.92 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.90 7.75 -2.39 -0.02 0.88 16 43 H 0.09 0.26 8.12 -2.39 -0.02 0.24 16 44 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.02 0.86 7.91 -2.38 -0.02 0.85 16 48 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -82.85 378.95 0.73 -82.12 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -1.12 Total: 4.00 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 4.80 Total: 0.91 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -4.94 Total: -120.94 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.05 Total: -15.01 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -82.85 0.73 -82.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494041552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.794 kcal (2) G-P(sol) polarization free energy of solvation -82.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds