Wall clock time and date at job start Tue Mar 31 2020 17:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47124 * 274.10932 * 3 2 1 5 5 H 1.48497 * 109.47029 * 34.11042 * 3 2 1 6 6 H 1.48500 * 109.47132 * 154.11263 * 3 2 1 7 7 C 1.38813 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00422 * 189.61283 * 7 2 1 9 9 N 1.36943 * 119.99714 * 9.33601 * 7 2 1 10 10 C 1.47418 * 125.64844 * 9.87031 * 9 7 2 11 11 C 1.55129 * 104.72416 * 155.81202 * 10 9 7 12 12 C 1.55153 * 101.48424 * 37.29543 * 11 10 9 13 13 H 1.09009 * 110.72338 * 82.69358 * 12 11 10 14 14 C 1.52995 * 110.87552 * 205.89691 * 12 11 10 15 15 C 1.52999 * 109.47503 * 180.02562 * 14 12 11 16 16 N 1.46505 * 109.47190 * 180.02562 * 15 14 12 17 17 C 1.34772 * 119.99934 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00266 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00109 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.69349 * 300.00134 * 19 17 16 21 21 C 1.53438 * 109.69666 * 179.45179 * 19 17 16 22 22 C 1.53100 * 109.55751 * 190.56507 * 21 19 17 23 23 C 1.53421 * 109.58383 * 70.04981 * 22 21 19 24 24 C 1.50601 * 108.33443 * 310.17608 * 23 22 21 25 25 N 1.32902 * 129.16050 * 196.53585 * 24 23 22 26 26 N 1.29184 * 108.62072 * 179.77533 * 25 24 23 27 27 N 1.29101 * 110.24509 * 0.14498 * 26 25 24 28 28 H 0.97006 * 126.00975 * 179.97438 * 27 26 25 29 29 C 1.34402 * 107.98718 * 359.96757 * 27 26 25 30 30 C 1.47022 * 125.64691 * 190.17164 * 9 7 2 31 31 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.36881 * 274.74515 * 10 9 7 33 33 H 1.09001 * 110.37090 * 37.06602 * 10 9 7 34 34 H 1.08994 * 111.19449 * 279.19429 * 11 10 9 35 35 H 1.09003 * 110.93914 * 155.28295 * 11 10 9 36 36 H 1.09000 * 109.47598 * 300.06600 * 14 12 11 37 37 H 1.09000 * 109.46854 * 60.06140 * 14 12 11 38 38 H 1.08996 * 109.47290 * 300.00072 * 15 14 12 39 39 H 1.09000 * 109.47083 * 60.00118 * 15 14 12 40 40 H 0.96995 * 119.99800 * 359.97438 * 16 15 14 41 41 H 1.08997 * 109.45190 * 310.59097 * 21 19 17 42 42 H 1.08997 * 109.45403 * 70.53212 * 21 19 17 43 43 H 1.09002 * 109.45597 * 190.08825 * 22 21 19 44 44 H 1.09004 * 109.45011 * 310.03947 * 22 21 19 45 45 H 1.08999 * 109.69266 * 69.89296 * 23 22 21 46 46 H 1.09004 * 109.68905 * 190.43357 * 23 22 21 47 47 H 1.08997 * 109.88219 * 300.44551 * 30 9 7 48 48 H 1.09001 * 109.87901 * 61.45485 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4107 2.0966 -1.3965 5 1 1.4937 2.6260 0.7851 6 1 3.5885 1.4166 0.6113 7 6 2.0102 -1.2021 0.0005 8 1 3.0789 -1.2087 0.1567 9 7 1.3391 -2.3803 -0.1913 10 6 -0.0684 -2.5089 -0.6103 11 6 -0.1573 -3.9109 -1.2684 12 6 0.7914 -4.7385 -0.3617 13 1 0.2724 -5.0719 0.5371 14 6 1.3705 -5.9320 -1.1241 15 6 2.2988 -6.7246 -0.2017 16 7 2.8537 -7.8671 -0.9320 17 6 3.7034 -8.7124 -0.3157 18 8 4.0091 -8.5271 0.8433 19 6 4.2738 -9.8879 -1.0666 20 1 3.4646 -10.5339 -1.4072 21 6 5.2162 -10.6792 -0.1500 22 6 5.9924 -11.7071 -0.9775 23 6 7.0007 -10.9848 -1.8805 24 6 6.2783 -9.8841 -2.6116 25 7 6.6545 -9.2058 -3.6908 26 7 5.7295 -8.3534 -3.9855 27 7 4.7570 -8.4397 -3.1408 28 1 3.9467 -7.9064 -3.1475 29 6 5.0645 -9.3983 -2.2504 30 6 1.9012 -3.7264 -0.0075 31 1 -0.4850 0.8400 0.0004 32 1 -0.7287 -2.4509 0.2550 33 1 -0.3212 -1.7340 -1.3340 34 1 0.2060 -3.8877 -2.2958 35 1 -1.1754 -4.2978 -1.2248 36 1 0.5585 -6.5752 -1.4631 37 1 1.9342 -5.5739 -1.9855 38 1 3.1108 -6.0811 0.1367 39 1 1.7356 -7.0827 0.6601 40 1 2.6090 -8.0154 -1.8587 41 1 5.9166 -9.9947 0.3284 42 1 4.6327 -11.1935 0.6135 43 1 6.5239 -12.3846 -0.3092 44 1 5.2968 -12.2768 -1.5938 45 1 7.7993 -10.5595 -1.2726 46 1 7.4211 -11.6890 -2.5985 47 1 2.7550 -3.8652 -0.6707 48 1 2.2113 -3.8602 1.0288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494041553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:16 Heat of formation + Delta-G solvation = 64.967323 kcal Electronic energy + Delta-G solvation = -28598.340895 eV Core-core repulsion = 24690.141680 eV Total energy + Delta-G solvation = -3908.199215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.90674 -40.30289 -38.03789 -37.20821 -35.51217 -34.36362 -33.08934 -31.39663 -30.61214 -30.52332 -29.03239 -26.85683 -25.32572 -24.54294 -23.60471 -23.08495 -22.28221 -21.37941 -20.22109 -20.02045 -19.47638 -18.63195 -17.51179 -16.93094 -16.65991 -16.09960 -16.05544 -15.55369 -14.96177 -14.69738 -14.42666 -14.31686 -14.27538 -14.07546 -13.70671 -13.44421 -12.70568 -12.62906 -12.40090 -12.14559 -11.97373 -11.82947 -11.75698 -11.73637 -11.68367 -11.50901 -11.27903 -11.09380 -10.87224 -10.78585 -10.76635 -10.41361 -10.21087 -10.06519 -9.95856 -9.83027 -9.66722 -9.44964 -9.29034 -8.59827 -6.81527 -5.76200 -3.08733 1.06079 2.01908 2.14578 2.30004 2.70011 3.38974 3.44635 3.46454 3.76639 3.87659 4.12201 4.24494 4.40733 4.48552 4.65330 4.72413 4.78741 4.82063 4.92773 4.95362 5.11360 5.13197 5.41502 5.42024 5.46440 5.48634 5.50804 5.56215 5.58962 5.63394 5.74138 5.80885 5.85367 5.87947 5.95493 6.08022 6.14040 6.28832 6.33213 6.51185 6.54008 6.69236 6.89870 6.96844 7.48393 7.56418 7.72468 7.76750 8.03797 8.25270 9.18587 9.80408 10.47876 11.36928 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.002288 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.211233 B =12235.513030 C =12763.274718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.172 3.828 11 C -0.140 4.140 12 C -0.096 4.096 13 H 0.074 0.926 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.734 5.734 17 C 0.513 3.487 18 O -0.516 6.516 19 C -0.031 4.031 20 H 0.120 0.880 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.037 4.037 24 C -0.001 4.001 25 N -0.257 5.257 26 N -0.076 5.076 27 N -0.379 5.379 28 H 0.444 0.556 29 C -0.017 4.017 30 C 0.139 3.861 31 H 0.253 0.747 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.388 0.612 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.021 0.979 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -26.818 -4.480 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.047 3.953 11 C -0.179 4.179 12 C -0.116 4.116 13 H 0.093 0.907 14 C -0.156 4.156 15 C -0.008 4.008 16 N -0.386 5.386 17 C 0.297 3.703 18 O -0.390 6.390 19 C -0.054 4.054 20 H 0.137 0.863 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.076 4.076 24 C -0.141 4.141 25 N -0.123 5.123 26 N -0.055 5.055 27 N -0.099 5.099 28 H 0.291 0.709 29 C -0.152 4.152 30 C 0.013 3.987 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.222 0.778 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.039 0.961 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.503 -25.755 -4.880 27.008 hybrid contribution -0.831 0.897 0.396 1.285 sum 5.672 -24.858 -4.485 25.889 Atomic orbital electron populations 1.69954 1.04971 1.25171 1.56529 1.24822 0.95642 0.97840 1.02121 0.86119 0.78740 0.83491 0.77543 1.21586 1.21717 1.20570 1.19047 0.91152 0.82835 1.42752 0.90671 1.44504 1.09281 0.99836 1.79385 1.21444 0.85759 0.91211 0.96856 1.23075 0.97436 0.98905 0.98461 1.22069 0.97567 0.93534 0.98424 0.90739 1.21815 0.98305 0.97036 0.98478 1.21626 0.97765 0.86123 0.95299 1.46259 1.47927 1.29015 1.15449 1.20398 0.78888 0.83356 0.87611 1.90764 1.58661 1.72989 1.16597 1.20071 0.98458 0.95736 0.91168 0.86275 1.21493 0.97990 0.97590 0.96645 1.21679 0.98075 0.97663 0.98291 1.20053 0.97226 0.93172 0.97175 1.21760 0.93936 1.01966 0.96484 1.74942 1.19728 1.04398 1.13191 1.78705 0.93622 1.19042 1.14120 1.44843 1.18646 1.26803 1.19606 0.70880 1.21458 0.99670 0.96826 0.97285 1.21360 0.93963 0.86032 0.97313 0.93714 0.95613 0.91329 0.92213 0.92296 0.91458 0.91303 0.90500 0.90858 0.77790 0.89789 0.89570 0.89796 0.91154 0.89445 0.89364 0.96143 0.96206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.67 55.49 0.59 -26.52 16 2 C -0.01 -0.22 5.40 -17.43 -0.09 -0.31 16 3 Si 0.91 22.30 29.56 -169.99 -5.03 17.28 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.48 10.24 -15.06 -0.15 -6.64 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 9 N -0.60 -15.45 3.39 -169.93 -0.58 -16.02 16 10 C 0.17 4.10 5.43 -2.41 -0.01 4.08 16 11 C -0.14 -2.44 6.55 -24.47 -0.16 -2.60 16 12 C -0.10 -1.51 2.97 -88.79 -0.26 -1.77 16 13 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 14 C -0.12 -1.30 4.73 -26.73 -0.13 -1.43 16 15 C 0.11 1.25 5.52 -4.04 -0.02 1.23 16 16 N -0.73 -6.13 5.12 -60.29 -0.31 -6.44 16 17 C 0.51 5.03 7.14 -10.99 -0.08 4.95 16 18 O -0.52 -7.18 15.83 5.56 0.09 -7.10 16 19 C -0.03 -0.21 2.90 -92.78 -0.27 -0.48 16 20 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 21 C -0.10 -0.62 4.67 -26.45 -0.12 -0.74 16 22 C -0.12 -0.53 5.90 -26.46 -0.16 -0.68 16 23 C -0.04 -0.24 6.30 -27.71 -0.17 -0.41 16 24 C 0.00 -0.01 7.11 -83.11 -0.59 -0.60 16 25 N -0.26 -3.20 12.40 33.17 0.41 -2.79 16 26 N -0.08 -0.91 13.40 60.35 0.81 -0.10 16 27 N -0.38 -3.33 6.76 33.40 0.23 -3.10 16 28 H 0.44 2.70 6.86 -190.07 -1.30 1.39 16 29 C -0.02 -0.14 6.38 -82.48 -0.53 -0.67 16 30 C 0.14 2.83 5.98 -3.06 -0.02 2.81 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.07 1.82 6.92 -51.93 -0.36 1.46 16 34 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 38 H 0.08 1.03 7.49 -51.93 -0.39 0.64 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.39 2.06 6.57 -40.82 -0.27 1.79 16 41 H 0.08 0.69 7.74 -51.93 -0.40 0.29 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -35.62 378.92 -9.42 -45.04 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.58 Total: -2.71 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.77 Total: -3.25 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 1.15 Total: -54.97 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.09 Total: -7.10 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.62 -9.42 -45.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494041553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.011 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds