Wall clock time and date at job start Tue Mar 31 2020 17:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47124 * 274.10932 * 3 2 1 5 5 H 1.48497 * 109.47029 * 34.11042 * 3 2 1 6 6 H 1.48500 * 109.47132 * 154.11263 * 3 2 1 7 7 C 1.38813 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00422 * 189.61283 * 7 2 1 9 9 N 1.36943 * 119.99714 * 9.33601 * 7 2 1 10 10 C 1.47418 * 125.64844 * 9.87031 * 9 7 2 11 11 C 1.55129 * 104.72416 * 155.81202 * 10 9 7 12 12 C 1.55153 * 101.48424 * 37.29543 * 11 10 9 13 13 H 1.09009 * 110.72338 * 82.69358 * 12 11 10 14 14 C 1.52995 * 110.87552 * 205.89691 * 12 11 10 15 15 C 1.52999 * 109.47503 * 180.02562 * 14 12 11 16 16 N 1.46505 * 109.47190 * 180.02562 * 15 14 12 17 17 C 1.34772 * 119.99934 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00266 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00109 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.69349 * 300.00134 * 19 17 16 21 21 C 1.53438 * 109.69666 * 179.45179 * 19 17 16 22 22 C 1.53100 * 109.55751 * 190.56507 * 21 19 17 23 23 C 1.53421 * 109.58383 * 70.04981 * 22 21 19 24 24 C 1.50601 * 108.33443 * 310.17608 * 23 22 21 25 25 N 1.32902 * 129.16050 * 196.53585 * 24 23 22 26 26 N 1.29184 * 108.62072 * 179.77533 * 25 24 23 27 27 N 1.29101 * 110.24509 * 0.14498 * 26 25 24 28 28 H 0.97006 * 126.00975 * 179.97438 * 27 26 25 29 29 C 1.34402 * 107.98718 * 359.96757 * 27 26 25 30 30 C 1.47022 * 125.64691 * 190.17164 * 9 7 2 31 31 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.36881 * 274.74515 * 10 9 7 33 33 H 1.09001 * 110.37090 * 37.06602 * 10 9 7 34 34 H 1.08994 * 111.19449 * 279.19429 * 11 10 9 35 35 H 1.09003 * 110.93914 * 155.28295 * 11 10 9 36 36 H 1.09000 * 109.47598 * 300.06600 * 14 12 11 37 37 H 1.09000 * 109.46854 * 60.06140 * 14 12 11 38 38 H 1.08996 * 109.47290 * 300.00072 * 15 14 12 39 39 H 1.09000 * 109.47083 * 60.00118 * 15 14 12 40 40 H 0.96995 * 119.99800 * 359.97438 * 16 15 14 41 41 H 1.08997 * 109.45190 * 310.59097 * 21 19 17 42 42 H 1.08997 * 109.45403 * 70.53212 * 21 19 17 43 43 H 1.09002 * 109.45597 * 190.08825 * 22 21 19 44 44 H 1.09004 * 109.45011 * 310.03947 * 22 21 19 45 45 H 1.08999 * 109.69266 * 69.89296 * 23 22 21 46 46 H 1.09004 * 109.68905 * 190.43357 * 23 22 21 47 47 H 1.08997 * 109.88219 * 300.44551 * 30 9 7 48 48 H 1.09001 * 109.87901 * 61.45485 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4107 2.0966 -1.3965 5 1 1.4937 2.6260 0.7851 6 1 3.5885 1.4166 0.6113 7 6 2.0102 -1.2021 0.0005 8 1 3.0789 -1.2087 0.1567 9 7 1.3391 -2.3803 -0.1913 10 6 -0.0684 -2.5089 -0.6103 11 6 -0.1573 -3.9109 -1.2684 12 6 0.7914 -4.7385 -0.3617 13 1 0.2724 -5.0719 0.5371 14 6 1.3705 -5.9320 -1.1241 15 6 2.2988 -6.7246 -0.2017 16 7 2.8537 -7.8671 -0.9320 17 6 3.7034 -8.7124 -0.3157 18 8 4.0091 -8.5271 0.8433 19 6 4.2738 -9.8879 -1.0666 20 1 3.4646 -10.5339 -1.4072 21 6 5.2162 -10.6792 -0.1500 22 6 5.9924 -11.7071 -0.9775 23 6 7.0007 -10.9848 -1.8805 24 6 6.2783 -9.8841 -2.6116 25 7 6.6545 -9.2058 -3.6908 26 7 5.7295 -8.3534 -3.9855 27 7 4.7570 -8.4397 -3.1408 28 1 3.9467 -7.9064 -3.1475 29 6 5.0645 -9.3983 -2.2504 30 6 1.9012 -3.7264 -0.0075 31 1 -0.4850 0.8400 0.0004 32 1 -0.7287 -2.4509 0.2550 33 1 -0.3212 -1.7340 -1.3340 34 1 0.2060 -3.8877 -2.2958 35 1 -1.1754 -4.2978 -1.2248 36 1 0.5585 -6.5752 -1.4631 37 1 1.9342 -5.5739 -1.9855 38 1 3.1108 -6.0811 0.1367 39 1 1.7356 -7.0827 0.6601 40 1 2.6090 -8.0154 -1.8587 41 1 5.9166 -9.9947 0.3284 42 1 4.6327 -11.1935 0.6135 43 1 6.5239 -12.3846 -0.3092 44 1 5.2968 -12.2768 -1.5938 45 1 7.7993 -10.5595 -1.2726 46 1 7.4211 -11.6890 -2.5985 47 1 2.7550 -3.8652 -0.6707 48 1 2.2113 -3.8602 1.0288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494041553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:15 Heat of formation + Delta-G solvation = 39.353406 kcal Electronic energy + Delta-G solvation = -28599.451598 eV Core-core repulsion = 24690.141680 eV Total energy + Delta-G solvation = -3909.309918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.63025 -41.09932 -39.49471 -37.84161 -36.56669 -35.23302 -34.65947 -32.66420 -31.58601 -31.16734 -30.62852 -28.27665 -26.74500 -25.59044 -24.45937 -23.79491 -23.30861 -22.21781 -21.95023 -20.83602 -20.52750 -19.35829 -18.89021 -18.20696 -17.45549 -17.04872 -16.99172 -16.72485 -16.52580 -15.77919 -15.63436 -15.19506 -14.98572 -14.88326 -14.67656 -14.34228 -14.30505 -13.84813 -13.62568 -13.39540 -13.19847 -13.05769 -12.87925 -12.74929 -12.69467 -12.45626 -12.29949 -12.23874 -12.02180 -12.00479 -11.84532 -11.71842 -11.58019 -11.47380 -11.38952 -11.38262 -11.02275 -10.70715 -10.28112 -9.98887 -8.88718 -7.92468 -5.26829 0.35279 1.27515 1.41913 1.42185 1.43322 1.52549 1.63768 1.97548 2.45748 3.15894 3.25826 3.27761 3.52269 3.67013 3.69472 3.74887 3.89887 3.91340 4.11262 4.15941 4.25753 4.28445 4.30572 4.33900 4.44788 4.57938 4.59931 4.67275 4.71246 4.83863 4.97118 4.97634 4.99301 5.07064 5.11844 5.12734 5.19290 5.22136 5.27129 5.32682 5.41421 5.46319 5.47696 5.61577 5.72836 5.74300 6.18476 6.28731 7.00856 7.05913 7.28033 7.74401 8.40047 9.19240 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.002288 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.211233 B =12235.513030 C =12763.274718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.976 3.024 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.628 5.628 10 C 0.172 3.828 11 C -0.122 4.122 12 C -0.083 4.083 13 H 0.080 0.920 14 C -0.103 4.103 15 C 0.121 3.879 16 N -0.720 5.720 17 C 0.511 3.489 18 O -0.561 6.561 19 C -0.020 4.020 20 H 0.160 0.840 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.040 4.040 24 C -0.013 4.013 25 N -0.291 5.291 26 N -0.110 5.110 27 N -0.368 5.368 28 H 0.455 0.545 29 C -0.008 4.008 30 C 0.133 3.867 31 H 0.249 0.751 32 H -0.006 1.006 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.407 0.593 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.025 0.975 48 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 -29.627 -5.270 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.047 3.953 11 C -0.160 4.160 12 C -0.102 4.102 13 H 0.098 0.902 14 C -0.141 4.141 15 C -0.003 4.003 16 N -0.374 5.374 17 C 0.297 3.703 18 O -0.439 6.439 19 C -0.043 4.043 20 H 0.177 0.823 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.079 4.079 24 C -0.154 4.154 25 N -0.156 5.156 26 N -0.088 5.088 27 N -0.090 5.090 28 H 0.304 0.696 29 C -0.145 4.145 30 C 0.008 3.992 31 H 0.058 0.942 32 H 0.012 0.988 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.244 0.756 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.116 0.884 47 H 0.043 0.957 48 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 6.200 -28.586 -5.722 29.805 hybrid contribution -0.720 1.773 0.712 2.042 sum 5.481 -26.813 -5.010 27.822 Atomic orbital electron populations 1.70153 1.06295 1.25516 1.57594 1.25649 0.96552 1.01073 1.02407 0.85102 0.77767 0.79229 0.77488 1.21124 1.21834 1.19563 1.19389 0.91476 0.84481 1.42302 0.90895 1.44863 1.10075 1.01057 1.79474 1.21305 0.84513 0.94334 0.95161 1.22918 0.99813 0.94674 0.98585 1.21988 0.95460 0.93789 0.98964 0.90160 1.21678 0.99350 0.95442 0.97664 1.21365 0.96806 0.86504 0.95608 1.46060 1.47292 1.27856 1.16164 1.20929 0.78336 0.83807 0.87196 1.90756 1.60198 1.74123 1.18791 1.20193 0.99353 0.94795 0.89979 0.82281 1.21528 0.97741 0.97558 0.97014 1.21660 0.97779 0.97098 0.98090 1.20232 0.97624 0.92631 0.97428 1.22359 0.94536 1.02493 0.95973 1.74899 1.20582 1.05340 1.14805 1.78640 0.94608 1.20000 1.15577 1.44841 1.18466 1.26635 1.19014 0.69631 1.21724 0.99464 0.96152 0.97176 1.21578 0.95819 0.85101 0.96684 0.94198 0.98802 0.95036 0.90998 0.89223 0.87658 0.90586 0.93427 0.91137 0.75631 0.92296 0.88428 0.87852 0.89501 0.89671 0.88373 0.95659 0.97498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.77 10.67 21.65 0.23 -57.54 16 2 C -0.06 -3.69 5.40 84.86 0.46 -3.23 16 3 Si 0.98 46.76 29.56 68.60 2.03 48.79 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.25 -14.33 10.24 84.03 0.86 -13.47 16 8 H 0.07 4.13 7.85 -2.91 -0.02 4.10 16 9 N -0.63 -32.88 3.39 -691.55 -2.35 -35.23 16 10 C 0.17 8.36 5.43 86.93 0.47 8.83 16 11 C -0.12 -3.97 6.55 32.06 0.21 -3.76 16 12 C -0.08 -2.41 2.97 -9.61 -0.03 -2.43 16 13 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 14 C -0.10 -1.90 4.73 30.59 0.14 -1.75 16 15 C 0.12 2.38 5.52 86.38 0.48 2.86 16 16 N -0.72 -9.99 5.12 -463.06 -2.37 -12.36 16 17 C 0.51 8.93 7.14 87.66 0.63 9.55 16 18 O -0.56 -15.16 15.83 -3.03 -0.05 -15.21 16 19 C -0.02 -0.21 2.90 -12.19 -0.04 -0.24 16 20 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 21 C -0.10 -1.01 4.67 30.77 0.14 -0.87 16 22 C -0.11 -0.62 5.90 30.77 0.18 -0.44 16 23 C -0.04 -0.44 6.30 29.96 0.19 -0.25 16 24 C -0.01 -0.23 7.11 41.76 0.30 0.07 16 25 N -0.29 -7.15 12.40 -48.96 -0.61 -7.76 16 26 N -0.11 -2.58 13.40 37.02 0.50 -2.08 16 27 N -0.37 -5.84 6.76 -48.24 -0.33 -6.16 16 28 H 0.45 4.44 6.86 -219.67 -1.51 2.94 16 29 C -0.01 -0.12 6.38 41.51 0.26 0.14 16 30 C 0.13 5.41 5.98 86.73 0.52 5.93 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H -0.01 -0.33 8.08 -2.38 -0.02 -0.34 16 33 H 0.03 1.73 6.92 -2.39 -0.02 1.71 16 34 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.35 8.06 -2.39 -0.02 1.34 16 38 H 0.05 1.24 7.49 -2.39 -0.02 1.22 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.41 2.71 6.57 -92.71 -0.61 2.10 16 41 H 0.06 0.91 7.74 -2.39 -0.02 0.89 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.09 0.27 8.12 -2.39 -0.02 0.25 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.03 1.00 7.76 -2.39 -0.02 0.99 16 48 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -82.71 378.92 0.70 -82.01 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -1.13 Total: 4.61 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 4.78 Total: 0.94 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -4.92 Total: -121.13 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.05 Total: -15.21 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -82.71 0.70 -82.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494041553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.362 kcal (2) G-P(sol) polarization free energy of solvation -82.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds