Wall clock time and date at job start Tue Mar 31 2020 17:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85249 * 336.19712 * 10 9 7 12 12 C 1.53786 * 113.61344 * 107.50254 * 10 9 7 13 13 C 1.53779 * 87.07874 * 89.11515 * 12 10 9 14 14 H 1.09003 * 113.61816 * 270.88643 * 13 12 10 15 15 C 1.53004 * 113.61632 * 139.98310 * 13 12 10 16 16 N 1.46496 * 109.47504 * 87.50007 * 15 13 12 17 17 C 1.34766 * 120.00532 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00004 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00713 * 180.02562 * 17 16 15 20 20 N 1.46497 * 109.47471 * 179.97438 * 19 17 16 21 21 N 1.29099 * 126.00606 * 90.02499 * 20 19 17 22 22 N 1.29025 * 110.25951 * 179.90338 * 21 20 19 23 23 C 1.32909 * 108.63161 * 359.97438 * 22 21 20 24 24 C 1.34392 * 126.00311 * 269.71282 * 20 19 17 25 25 C 1.50541 * 129.25840 * 0.88514 * 24 20 19 26 26 C 1.53437 * 108.38425 * 163.09293 * 25 24 20 27 27 C 1.53109 * 109.54808 * 49.50908 * 26 25 24 28 28 C 1.50602 * 129.15798 * 180.18009 * 23 22 21 29 29 C 1.53782 * 113.61388 * 205.00107 * 10 9 7 30 30 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 32 32 H 1.08992 * 113.61413 * 203.66228 * 12 10 9 33 33 H 1.08998 * 113.61300 * 334.57176 * 12 10 9 34 34 H 1.08996 * 109.47256 * 207.50578 * 15 13 12 35 35 H 1.09001 * 109.46520 * 327.50230 * 15 13 12 36 36 H 0.97002 * 119.99427 * 0.02562 * 16 15 13 37 37 H 1.09003 * 109.46467 * 300.00151 * 19 17 16 38 38 H 1.09004 * 109.46691 * 59.99070 * 19 17 16 39 39 H 1.09002 * 109.82759 * 43.26602 * 25 24 20 40 40 H 1.08998 * 109.49062 * 282.72137 * 25 24 20 41 41 H 1.08999 * 109.45612 * 289.48758 * 26 25 24 42 42 H 1.08996 * 109.44334 * 169.52522 * 26 25 24 43 43 H 1.08998 * 109.45147 * 169.89195 * 27 26 25 44 44 H 1.08999 * 109.45203 * 49.96070 * 27 26 25 45 45 H 1.08999 * 109.68869 * 283.16331 * 28 23 22 46 46 H 1.08994 * 109.69096 * 43.70763 * 28 23 22 47 47 H 1.08994 * 113.61481 * 25.43261 * 29 10 9 48 48 H 1.08998 * 113.61613 * 156.25683 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0658 -3.5638 -0.4049 12 6 1.9992 -4.4021 1.3444 13 6 0.7206 -5.0791 0.8231 14 1 -0.1901 -4.5240 1.0479 15 6 0.6197 -6.5616 1.1877 16 7 -0.0121 -6.6994 2.5022 17 6 -0.2060 -7.9234 3.0318 18 8 0.1423 -8.9110 2.4199 19 6 -0.8565 -8.0652 4.3837 20 7 -0.9530 -9.4847 4.7328 21 7 -0.0651 -10.1715 5.3705 22 7 -0.4622 -11.3906 5.5150 23 6 -1.6595 -11.5167 4.9520 24 6 -1.9839 -10.2993 4.4506 25 6 -3.2618 -9.9986 3.7138 26 6 -3.9011 -11.3278 3.2912 27 6 -3.9602 -12.2732 4.4941 28 6 -2.5425 -12.7330 4.8571 29 6 1.2603 -4.8288 -0.5950 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.8280 -5.0933 1.4970 33 1 1.8293 -3.7478 2.1994 34 1 0.0194 -7.0796 0.4399 35 1 1.6185 -6.9972 1.2172 36 1 -0.2910 -5.9095 2.9914 37 1 -0.2566 -7.5466 5.1317 38 1 -1.8554 -7.6300 4.3537 39 1 -3.0465 -9.3972 2.8305 40 1 -3.9416 -9.4565 4.3711 41 1 -3.3040 -11.7828 2.5008 42 1 -4.9107 -11.1442 2.9237 43 1 -4.5706 -13.1410 4.2441 44 1 -4.4013 -11.7522 5.3439 45 1 -2.1646 -13.4017 4.0837 46 1 -2.5575 -13.2516 5.8157 47 1 0.4940 -4.5190 -1.3054 48 1 1.8872 -5.6360 -0.9737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565874744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:24 Heat of formation + Delta-G solvation = 82.963771 kcal Electronic energy + Delta-G solvation = -27939.532597 eV Core-core repulsion = 24032.113766 eV Total energy + Delta-G solvation = -3907.418831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.65403 -40.14345 -38.76055 -37.43393 -35.22311 -34.92448 -33.65052 -31.12578 -30.44893 -30.21805 -29.09533 -26.94588 -25.26129 -24.50829 -23.62559 -23.00948 -22.47637 -21.77848 -20.79670 -19.94165 -18.81303 -18.03951 -17.71322 -17.36465 -16.32463 -16.08360 -15.91609 -15.31969 -15.12643 -14.67185 -14.41389 -14.30061 -14.20331 -14.06130 -13.85295 -13.75211 -13.63671 -13.42443 -12.88677 -12.55303 -12.34603 -12.14789 -11.80369 -11.63285 -11.57866 -11.43715 -11.38488 -11.05735 -10.85802 -10.77238 -10.71708 -10.46813 -10.22548 -10.03501 -9.96274 -9.78330 -9.36026 -9.22842 -9.05744 -8.97855 -7.16562 -6.21465 -3.22357 1.24913 1.86043 2.10336 2.35231 2.84649 3.46078 3.48857 3.66412 3.79413 4.03640 4.16744 4.26365 4.39237 4.40408 4.49617 4.56887 4.60066 4.81398 4.83763 4.93906 5.00542 5.01038 5.09916 5.16581 5.36027 5.39223 5.41668 5.44681 5.45533 5.54782 5.64268 5.68192 5.74672 5.75510 5.83654 5.84993 6.01613 6.03004 6.06088 6.16580 6.25429 6.38933 6.54039 6.66230 6.83248 7.07416 7.72869 7.74421 8.31078 8.63984 9.10334 9.96551 10.10549 11.26356 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025878 B = 0.001838 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.721856 B =15228.721504 C =15405.450878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.335 4.335 8 H 0.067 0.933 9 N -0.717 5.717 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.168 4.168 13 C -0.120 4.120 14 H 0.092 0.908 15 C 0.132 3.868 16 N -0.715 5.715 17 C 0.498 3.502 18 O -0.523 6.523 19 C 0.093 3.907 20 N -0.268 5.268 21 N -0.084 5.084 22 N -0.260 5.260 23 C -0.021 4.021 24 C -0.008 4.008 25 C -0.047 4.047 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.032 4.032 29 C -0.148 4.148 30 H 0.254 0.746 31 H 0.368 0.632 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.406 0.594 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.789 -21.641 8.843 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.085 0.915 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.209 4.209 13 C -0.139 4.139 14 H 0.110 0.890 15 C 0.009 3.991 16 N -0.367 5.367 17 C 0.280 3.720 18 O -0.398 6.398 19 C -0.033 4.033 20 N -0.059 5.059 21 N -0.062 5.062 22 N -0.125 5.125 23 C -0.161 4.161 24 C -0.141 4.141 25 C -0.087 4.087 26 C -0.153 4.153 27 C -0.157 4.157 28 C -0.072 4.072 29 C -0.188 4.188 30 H 0.065 0.935 31 H 0.201 0.799 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.240 0.760 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.024 -20.570 9.064 23.868 hybrid contribution -1.048 -1.066 -0.244 1.515 sum -9.072 -21.636 8.821 25.065 Atomic orbital electron populations 1.70908 1.06048 1.28338 1.53392 1.25817 0.97029 1.01109 1.00169 0.83233 0.74241 0.75474 0.75960 1.20995 1.22160 1.22184 1.20090 0.92162 0.85609 1.48708 0.91535 1.42167 1.04660 1.00419 1.88399 1.20982 0.95174 0.85106 0.92724 0.91754 1.23894 0.95614 0.99637 1.01785 1.22724 0.99586 0.92721 0.98828 0.88986 1.21554 0.97822 0.97253 0.82438 1.45948 1.61894 1.07431 1.21448 1.20368 0.80222 0.84291 0.87084 1.90814 1.49996 1.37362 1.61617 1.21879 1.05803 0.77881 0.97701 1.46246 1.12586 1.09931 1.37174 1.78606 1.14166 0.98989 1.14423 1.74797 1.10542 1.08388 1.18737 1.21621 0.95025 0.95918 1.03518 1.21774 0.94460 0.91671 1.06194 1.20216 0.90169 0.99484 0.98797 1.21574 1.01138 0.94109 0.98459 1.21636 0.96027 0.99730 0.98320 1.19950 0.91936 0.92328 1.02938 1.23464 1.00527 0.99886 0.94926 0.93485 0.79892 0.91177 0.91464 0.91521 0.91201 0.75970 0.84334 0.84882 0.90131 0.89665 0.91040 0.90390 0.90518 0.91378 0.89983 0.89831 0.91393 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.06 13.70 55.49 0.76 -27.30 16 2 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 3 Si 1.08 25.11 29.92 -169.99 -5.09 20.02 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.33 -9.07 9.97 -15.06 -0.15 -9.22 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -16.92 5.31 -52.63 -0.28 -17.20 16 10 C 0.17 3.22 4.56 -67.12 -0.31 2.91 16 11 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 12 C -0.17 -2.60 7.43 -25.92 -0.19 -2.80 16 13 C -0.12 -1.58 3.63 -89.80 -0.33 -1.91 16 14 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 15 C 0.13 1.55 5.51 -4.04 -0.02 1.52 16 16 N -0.72 -6.91 5.55 -60.30 -0.33 -7.24 16 17 C 0.50 5.47 7.90 -10.99 -0.09 5.39 16 18 O -0.52 -8.28 16.43 5.55 0.09 -8.19 16 19 C 0.09 0.73 6.72 -5.19 -0.03 0.69 16 20 N -0.27 -3.11 2.82 -58.43 -0.16 -3.27 16 21 N -0.08 -1.24 13.19 60.35 0.80 -0.45 16 22 N -0.26 -3.86 12.40 33.17 0.41 -3.45 16 23 C -0.02 -0.25 7.11 -83.12 -0.59 -0.84 16 24 C -0.01 -0.08 6.76 -82.49 -0.56 -0.64 16 25 C -0.05 -0.32 5.94 -27.73 -0.16 -0.49 16 26 C -0.11 -0.65 5.90 -26.45 -0.16 -0.81 16 27 C -0.12 -0.64 5.89 -26.47 -0.16 -0.79 16 28 C -0.03 -0.25 6.30 -27.72 -0.17 -0.43 16 29 C -0.15 -2.21 7.39 -25.92 -0.19 -2.40 16 30 H 0.25 7.39 6.77 -40.82 -0.28 7.11 16 31 H 0.37 8.86 6.73 -40.82 -0.27 8.58 16 32 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.89 7.84 -51.93 -0.41 0.49 16 36 H 0.41 2.94 8.47 -40.82 -0.35 2.60 16 37 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.13 0.52 7.96 -51.93 -0.41 0.11 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -36.69 392.67 -8.76 -45.46 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.67 Total: 6.82 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.21 Total: -11.12 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 1.19 Total: -58.90 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.69 -8.76 -45.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565874744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.421 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds