Wall clock time and date at job start Tue Mar 31 2020 17:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85249 * 336.19712 * 10 9 7 12 12 C 1.53786 * 113.61344 * 107.50254 * 10 9 7 13 13 C 1.53779 * 87.07874 * 89.11515 * 12 10 9 14 14 H 1.09003 * 113.61816 * 270.88643 * 13 12 10 15 15 C 1.53004 * 113.61632 * 139.98310 * 13 12 10 16 16 N 1.46496 * 109.47504 * 87.50007 * 15 13 12 17 17 C 1.34766 * 120.00532 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00004 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00713 * 180.02562 * 17 16 15 20 20 N 1.46497 * 109.47471 * 179.97438 * 19 17 16 21 21 N 1.29099 * 126.00606 * 90.02499 * 20 19 17 22 22 N 1.29025 * 110.25951 * 179.90338 * 21 20 19 23 23 C 1.32909 * 108.63161 * 359.97438 * 22 21 20 24 24 C 1.34392 * 126.00311 * 269.71282 * 20 19 17 25 25 C 1.50541 * 129.25840 * 0.88514 * 24 20 19 26 26 C 1.53437 * 108.38425 * 163.09293 * 25 24 20 27 27 C 1.53109 * 109.54808 * 49.50908 * 26 25 24 28 28 C 1.50602 * 129.15798 * 180.18009 * 23 22 21 29 29 C 1.53782 * 113.61388 * 205.00107 * 10 9 7 30 30 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 32 32 H 1.08992 * 113.61413 * 203.66228 * 12 10 9 33 33 H 1.08998 * 113.61300 * 334.57176 * 12 10 9 34 34 H 1.08996 * 109.47256 * 207.50578 * 15 13 12 35 35 H 1.09001 * 109.46520 * 327.50230 * 15 13 12 36 36 H 0.97002 * 119.99427 * 0.02562 * 16 15 13 37 37 H 1.09003 * 109.46467 * 300.00151 * 19 17 16 38 38 H 1.09004 * 109.46691 * 59.99070 * 19 17 16 39 39 H 1.09002 * 109.82759 * 43.26602 * 25 24 20 40 40 H 1.08998 * 109.49062 * 282.72137 * 25 24 20 41 41 H 1.08999 * 109.45612 * 289.48758 * 26 25 24 42 42 H 1.08996 * 109.44334 * 169.52522 * 26 25 24 43 43 H 1.08998 * 109.45147 * 169.89195 * 27 26 25 44 44 H 1.08999 * 109.45203 * 49.96070 * 27 26 25 45 45 H 1.08999 * 109.68869 * 283.16331 * 28 23 22 46 46 H 1.08994 * 109.69096 * 43.70763 * 28 23 22 47 47 H 1.08994 * 113.61481 * 25.43261 * 29 10 9 48 48 H 1.08998 * 113.61613 * 156.25683 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0658 -3.5638 -0.4049 12 6 1.9992 -4.4021 1.3444 13 6 0.7206 -5.0791 0.8231 14 1 -0.1901 -4.5240 1.0479 15 6 0.6197 -6.5616 1.1877 16 7 -0.0121 -6.6994 2.5022 17 6 -0.2060 -7.9234 3.0318 18 8 0.1423 -8.9110 2.4199 19 6 -0.8565 -8.0652 4.3837 20 7 -0.9530 -9.4847 4.7328 21 7 -0.0651 -10.1715 5.3705 22 7 -0.4622 -11.3906 5.5150 23 6 -1.6595 -11.5167 4.9520 24 6 -1.9839 -10.2993 4.4506 25 6 -3.2618 -9.9986 3.7138 26 6 -3.9011 -11.3278 3.2912 27 6 -3.9602 -12.2732 4.4941 28 6 -2.5425 -12.7330 4.8571 29 6 1.2603 -4.8288 -0.5950 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.8280 -5.0933 1.4970 33 1 1.8293 -3.7478 2.1994 34 1 0.0194 -7.0796 0.4399 35 1 1.6185 -6.9972 1.2172 36 1 -0.2910 -5.9095 2.9914 37 1 -0.2566 -7.5466 5.1317 38 1 -1.8554 -7.6300 4.3537 39 1 -3.0465 -9.3972 2.8305 40 1 -3.9416 -9.4565 4.3711 41 1 -3.3040 -11.7828 2.5008 42 1 -4.9107 -11.1442 2.9237 43 1 -4.5706 -13.1410 4.2441 44 1 -4.4013 -11.7522 5.3439 45 1 -2.1646 -13.4017 4.0837 46 1 -2.5575 -13.2516 5.8157 47 1 0.4940 -4.5190 -1.3054 48 1 1.8872 -5.6360 -0.9737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565874744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:23 Heat of formation + Delta-G solvation = 56.915604 kcal Electronic energy + Delta-G solvation = -27940.662130 eV Core-core repulsion = 24032.113766 eV Total energy + Delta-G solvation = -3908.548364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.48556 -41.12129 -40.04100 -37.98387 -36.38477 -35.87341 -35.28988 -32.08536 -31.54430 -31.13830 -30.10853 -28.06847 -26.55546 -25.58386 -25.12432 -23.69535 -23.59231 -22.77228 -21.64027 -20.56567 -20.14857 -19.50814 -18.76174 -18.45731 -17.14742 -17.04541 -16.85333 -16.69686 -16.08783 -15.90866 -15.55667 -15.25470 -15.03077 -14.96298 -14.86127 -14.77590 -14.61015 -14.41634 -13.83734 -13.55212 -13.42244 -13.08496 -12.99648 -12.82435 -12.59407 -12.55821 -12.28253 -12.03229 -11.97035 -11.85204 -11.80612 -11.67142 -11.46868 -11.37400 -11.36236 -11.05443 -10.89483 -10.75675 -10.27649 -9.85780 -9.11957 -8.39925 -5.34219 0.42044 1.15893 1.27022 1.47427 1.59319 1.68007 1.84581 2.03318 2.69896 3.14332 3.35868 3.39628 3.48593 3.56998 3.65592 3.69482 3.76478 3.85657 3.90397 3.97319 3.98195 4.09822 4.20577 4.28269 4.40720 4.53513 4.56536 4.57822 4.59908 4.64748 4.82467 4.87836 4.88395 4.98707 4.99112 5.06785 5.11627 5.17799 5.19716 5.22505 5.31867 5.36104 5.43991 5.48159 5.52954 5.65217 6.28069 6.49693 6.93993 7.09182 7.41711 7.99729 8.09699 9.11830 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025878 B = 0.001838 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.721856 B =15228.721504 C =15405.450878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.102 4.102 3 Si 1.126 2.874 4 H -0.293 1.293 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.730 5.730 10 C 0.146 3.854 11 H 0.053 0.947 12 C -0.154 4.154 13 C -0.097 4.097 14 H 0.090 0.910 15 C 0.142 3.858 16 N -0.703 5.703 17 C 0.501 3.499 18 O -0.575 6.575 19 C 0.090 3.910 20 N -0.269 5.269 21 N -0.128 5.128 22 N -0.300 5.300 23 C -0.041 4.041 24 C -0.004 4.004 25 C -0.047 4.047 26 C -0.115 4.115 27 C -0.112 4.112 28 C -0.035 4.035 29 C -0.136 4.136 30 H 0.245 0.755 31 H 0.363 0.637 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.420 0.580 37 H 0.161 0.839 38 H 0.180 0.820 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 -21.910 9.160 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.294 4.294 3 Si 0.951 3.049 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.370 5.370 10 C 0.036 3.964 11 H 0.071 0.929 12 C -0.194 4.194 13 C -0.116 4.116 14 H 0.108 0.892 15 C 0.018 3.982 16 N -0.356 5.356 17 C 0.286 3.714 18 O -0.455 6.455 19 C -0.034 4.034 20 N -0.060 5.060 21 N -0.104 5.104 22 N -0.163 5.163 23 C -0.182 4.182 24 C -0.138 4.138 25 C -0.086 4.086 26 C -0.153 4.153 27 C -0.150 4.150 28 C -0.074 4.074 29 C -0.175 4.175 30 H 0.056 0.944 31 H 0.195 0.805 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.257 0.743 37 H 0.179 0.821 38 H 0.197 0.803 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.336 -20.858 9.406 24.712 hybrid contribution -0.584 -1.045 -0.391 1.259 sum -9.921 -21.903 9.015 25.679 Atomic orbital electron populations 1.71002 1.07043 1.27949 1.56132 1.27122 0.97161 1.04491 1.00586 0.82640 0.73404 0.71805 0.77069 1.21911 1.20611 1.20459 1.20401 0.92343 0.87036 1.46701 0.91721 1.42260 1.04530 1.01229 1.88996 1.21323 0.94864 0.84687 0.95552 0.92877 1.23704 0.97506 0.99178 0.99035 1.22483 0.98371 0.93577 0.97137 0.89166 1.21306 0.97770 0.95572 0.83532 1.45798 1.61108 1.07874 1.20780 1.20822 0.79285 0.83563 0.87734 1.90801 1.52338 1.39036 1.63279 1.22273 1.08557 0.76603 0.95992 1.46529 1.12196 1.11016 1.36289 1.78496 1.15732 0.99514 1.16701 1.74717 1.12327 1.09008 1.20297 1.22340 0.94604 0.97876 1.03352 1.22463 0.95190 0.91123 1.05032 1.20453 0.88765 1.00524 0.98889 1.21619 1.02102 0.93437 0.98104 1.21633 0.94333 1.00591 0.98441 1.20129 0.92961 0.91136 1.03168 1.23355 0.99980 0.98498 0.95675 0.94414 0.80481 0.89347 0.93062 0.91375 0.91892 0.74273 0.82134 0.80307 0.89993 0.86822 0.92546 0.87833 0.88441 0.90663 0.90172 0.89497 0.92171 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.63 13.70 21.65 0.30 -58.34 16 2 C -0.10 -5.74 5.50 84.86 0.47 -5.27 16 3 Si 1.13 50.46 29.92 68.60 2.05 52.51 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.33 -18.11 9.97 84.03 0.84 -17.27 16 8 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 9 N -0.73 -34.59 5.31 -320.43 -1.70 -36.29 16 10 C 0.15 5.35 4.56 45.52 0.21 5.56 16 11 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 12 C -0.15 -4.53 7.43 31.12 0.23 -4.30 16 13 C -0.10 -2.38 3.63 -10.27 -0.04 -2.42 16 14 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 15 C 0.14 3.02 5.51 86.38 0.48 3.49 16 16 N -0.70 -11.92 5.55 -463.07 -2.57 -14.49 16 17 C 0.50 10.13 7.90 87.66 0.69 10.82 16 18 O -0.58 -17.91 16.43 -3.05 -0.05 -17.96 16 19 C 0.09 1.18 6.72 85.63 0.58 1.76 16 20 N -0.27 -5.96 2.82 -338.77 -0.95 -6.92 16 21 N -0.13 -3.82 13.19 37.02 0.49 -3.33 16 22 N -0.30 -9.20 12.40 -48.98 -0.61 -9.80 16 23 C -0.04 -0.96 7.11 41.75 0.30 -0.67 16 24 C 0.00 -0.07 6.76 41.50 0.28 0.21 16 25 C -0.05 -0.51 5.94 29.94 0.18 -0.33 16 26 C -0.11 -0.99 5.90 30.78 0.18 -0.81 16 27 C -0.11 -0.92 5.89 30.77 0.18 -0.74 16 28 C -0.03 -0.52 6.30 29.95 0.19 -0.33 16 29 C -0.14 -3.83 7.39 31.12 0.23 -3.60 16 30 H 0.25 14.56 6.77 -92.71 -0.63 13.93 16 31 H 0.36 17.68 6.73 -92.71 -0.62 17.06 16 32 H 0.09 2.31 7.89 -2.39 -0.02 2.29 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.48 7.84 -2.39 -0.02 1.46 16 36 H 0.42 4.86 8.47 -92.71 -0.79 4.07 16 37 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.18 0.65 7.96 -2.38 -0.02 0.63 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 42 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.10 2.45 8.10 -2.39 -0.02 2.43 16 Total: -1.00 -83.12 392.67 1.65 -81.47 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.29 Total: 27.06 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 4.99 Total: -13.90 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -5.05 Total: -129.18 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.05 Total: -17.96 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 2.05 Total: 52.51 kcal Total: -83.12 1.65 -81.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565874744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.381 kcal (2) G-P(sol) polarization free energy of solvation -83.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds