Wall clock time and date at job start Tue Mar 31 2020 18:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00162 * 2 1 4 4 H 1.48492 * 109.46887 * 270.00061 * 3 2 1 5 5 H 1.48500 * 109.46803 * 30.00413 * 3 2 1 6 6 H 1.48502 * 109.47079 * 149.99794 * 3 2 1 7 7 C 1.38812 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00379 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00249 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47107 * 185.81944 * 10 9 7 12 12 H 1.08998 * 109.58300 * 53.15903 * 11 10 9 13 13 C 1.53191 * 109.58521 * 173.58808 * 11 10 9 14 14 C 1.53109 * 109.32778 * 174.42571 * 13 11 10 15 15 C 1.53039 * 109.50133 * 298.64940 * 14 13 11 16 16 C 1.53199 * 109.33479 * 61.35497 * 15 14 13 17 17 N 1.46925 * 109.58642 * 292.87699 * 11 10 9 18 18 C 1.34773 * 120.63085 * 6.58307 * 17 11 10 19 19 O 1.21279 * 120.00491 * 354.34702 * 18 17 11 20 20 C 1.50708 * 120.00036 * 174.35026 * 18 17 11 21 21 N 1.46503 * 109.47060 * 179.97438 * 20 18 17 22 22 C 1.35305 * 125.86592 * 124.71620 * 21 20 18 23 23 C 1.35349 * 106.17488 * 179.90225 * 22 21 20 24 24 C 1.50706 * 126.75299 * 180.12256 * 23 22 21 25 25 C 1.52998 * 117.49941 * 343.99761 * 24 23 22 26 26 C 1.52989 * 117.49977 * 275.33466 * 24 23 22 27 27 N 1.33766 * 106.49582 * 0.35394 * 23 22 21 28 28 N 1.28635 * 108.88885 * 359.76997 * 27 23 22 29 29 H 0.97006 * 119.99921 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99349 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46953 * 65.82026 * 10 9 7 32 32 H 1.09003 * 109.46730 * 305.82061 * 10 9 7 33 33 H 1.09003 * 109.49496 * 294.37150 * 13 11 10 34 34 H 1.08991 * 109.49686 * 54.43758 * 13 11 10 35 35 H 1.09002 * 109.49794 * 178.63100 * 14 13 11 36 36 H 1.08993 * 109.45214 * 58.64882 * 14 13 11 37 37 H 1.08999 * 109.50157 * 301.38843 * 15 14 13 38 38 H 1.08998 * 109.49741 * 181.31384 * 15 14 13 39 39 H 1.08999 * 109.58758 * 65.13533 * 16 15 14 40 40 H 1.09000 * 109.58095 * 185.55677 * 16 15 14 41 41 H 1.08995 * 109.46879 * 299.99947 * 20 18 17 42 42 H 1.08997 * 109.46747 * 59.99810 * 20 18 17 43 43 H 1.08002 * 126.91727 * 0.02562 * 22 21 20 44 44 H 1.08998 * 115.54536 * 129.66524 * 24 23 22 45 45 H 1.09007 * 117.49663 * 359.97438 * 25 24 23 46 46 H 1.08996 * 117.49860 * 145.01518 * 25 24 23 47 47 H 1.09005 * 117.50254 * 214.97865 * 26 24 23 48 48 H 1.09001 * 117.50104 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6098 -2.1951 0.1480 12 1 5.7815 -1.5663 1.0215 13 6 6.3625 -3.5196 0.3089 14 6 7.8694 -3.2486 0.3157 15 6 8.2809 -2.6173 -1.0163 16 6 7.5499 -1.2825 -1.1923 17 7 6.1053 -1.5128 -1.0552 18 6 5.2510 -1.1063 -2.0150 19 8 4.0747 -1.3920 -1.9407 20 6 5.7574 -0.2966 -3.1809 21 7 4.6426 0.0179 -4.0779 22 6 4.2742 1.2559 -4.4808 23 6 3.2082 1.0852 -5.2971 24 6 2.4331 2.1658 -6.0061 25 6 2.6213 3.6045 -5.5208 26 6 1.3159 2.8614 -5.2261 27 7 2.9748 -0.2311 -5.3468 28 7 3.8420 -0.8357 -4.6139 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3621 0.0014 31 1 3.9296 -2.9958 -0.9366 32 1 3.7726 -3.0865 0.8341 33 1 6.0735 -3.9904 1.2486 34 1 6.1153 -4.1817 -0.5208 35 1 8.4072 -4.1865 0.4545 36 1 8.1120 -2.5670 1.1309 37 1 8.0161 -3.2877 -1.8339 38 1 9.3573 -2.4458 -1.0205 39 1 7.8822 -0.5803 -0.4277 40 1 7.7631 -0.8769 -2.1813 41 1 6.2018 0.6289 -2.8148 42 1 6.5087 -0.8708 -3.7230 43 1 4.7386 2.1920 -4.2077 44 1 2.2801 2.0108 -7.0741 45 1 3.3055 3.7694 -4.6884 46 1 2.5918 4.3961 -6.2695 47 1 0.4280 3.1646 -5.7809 48 1 1.1411 2.5373 -4.2001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566940025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:15 Heat of formation + Delta-G solvation = 157.641231 kcal Electronic energy + Delta-G solvation = -30579.219095 eV Core-core repulsion = 26675.038522 eV Total energy + Delta-G solvation = -3904.180573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.98090 -40.39417 -37.40766 -37.03966 -35.10087 -33.85282 -32.86264 -32.05581 -30.44690 -30.31313 -28.56051 -26.35431 -24.56488 -23.91269 -22.95329 -22.47273 -22.03963 -21.11080 -20.69044 -20.26767 -19.03591 -17.70883 -17.33872 -16.79607 -16.04446 -15.65613 -15.38511 -15.09764 -14.70093 -14.56721 -14.44160 -14.34241 -14.02917 -13.90696 -13.47426 -13.31156 -12.76632 -12.65053 -12.47618 -12.30002 -12.19589 -11.92729 -11.45878 -11.35523 -11.28960 -11.18869 -10.98195 -10.92924 -10.83093 -10.75936 -10.59652 -10.36008 -10.15346 -10.08296 -9.85041 -9.43738 -8.83833 -8.75605 -8.61780 -8.33574 -6.84817 -5.59199 -2.85835 1.80988 2.40202 2.82543 2.88220 3.12767 3.36412 3.41852 3.46792 3.84949 4.25395 4.44474 4.55840 4.61077 4.70217 4.71726 4.77557 4.81029 4.90688 4.95053 4.95205 5.03391 5.18383 5.23182 5.30127 5.42066 5.50747 5.55517 5.63079 5.64538 5.73152 5.74552 5.80646 5.91092 5.92749 5.94804 6.01264 6.05582 6.14829 6.27798 6.30827 6.39778 6.43413 6.68674 6.80157 7.07751 7.56845 8.15501 8.52203 8.59422 8.87270 9.37943 10.10764 10.30090 11.60715 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.005336 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.058255 B = 5245.991204 C = 7031.376804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.211 4.211 8 H 0.087 0.913 9 N -0.718 5.718 10 C 0.164 3.836 11 C 0.142 3.858 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.109 3.891 17 N -0.615 5.615 18 C 0.445 3.555 19 O -0.405 6.405 20 C 0.099 3.901 21 N -0.278 5.278 22 C -0.052 4.052 23 C 0.010 3.990 24 C -0.069 4.069 25 C -0.173 4.173 26 C -0.165 4.165 27 N -0.263 5.263 28 N -0.044 5.044 29 H 0.255 0.745 30 H 0.354 0.646 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.183 0.817 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.147 2.466 -6.584 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.194 4.194 3 Si 0.713 3.287 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.342 4.342 8 H 0.105 0.895 9 N -0.363 5.363 10 C 0.037 3.963 11 C 0.039 3.961 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.173 4.173 16 C -0.015 4.015 17 N -0.355 5.355 18 C 0.226 3.774 19 O -0.269 6.269 20 C -0.027 4.027 21 N -0.071 5.071 22 C -0.201 4.201 23 C -0.127 4.127 24 C -0.089 4.089 25 C -0.210 4.210 26 C -0.202 4.202 27 N -0.130 5.130 28 N -0.024 5.024 29 H 0.065 0.935 30 H 0.186 0.814 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.200 0.800 44 H 0.138 0.862 45 H 0.111 0.889 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.847 0.704 -6.674 20.951 hybrid contribution 1.198 2.510 0.325 2.800 sum 21.045 3.214 -6.349 22.216 Atomic orbital electron populations 1.69687 1.04884 1.25148 1.59106 1.24547 0.95073 0.96591 1.03225 0.86567 0.78887 0.86010 0.77225 1.21589 1.22054 1.21242 1.18997 0.80673 0.94436 1.40081 0.89511 1.42641 1.03898 1.01600 1.88116 1.20877 0.86167 0.90159 0.99100 1.21568 0.95933 0.92493 0.86108 0.91221 1.21914 0.94590 0.97242 1.02876 1.21504 0.96147 1.00744 0.97130 1.21913 0.99650 0.96982 0.98725 1.21667 0.80697 0.97378 1.01739 1.47802 1.05941 1.61086 1.20708 1.20128 0.87534 0.84867 0.84857 1.91326 1.14372 1.50448 1.70801 1.21908 0.86491 1.03165 0.91107 1.46680 1.22922 1.05338 1.32187 1.23099 1.02268 0.90349 1.04429 1.20912 0.96962 0.92856 1.01948 1.19944 1.01467 0.89137 0.98309 1.22998 1.01043 0.93616 1.03390 1.23054 0.92440 1.02531 1.02188 1.75044 1.17125 1.04779 1.16019 1.78395 0.99023 1.17670 1.07287 0.93470 0.81376 0.93457 0.95453 0.90617 0.91222 0.91771 0.91855 0.91369 0.91002 0.91487 0.90556 0.86187 0.86363 0.80025 0.86224 0.88879 0.88129 0.88068 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.56 13.97 55.49 0.78 -30.79 16 2 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 3 Si 0.88 23.76 27.74 -169.99 -4.71 19.05 16 4 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 5 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.29 -7.21 6.52 56.52 0.37 -6.84 16 7 C -0.21 -6.46 10.17 -15.06 -0.15 -6.61 16 8 H 0.09 2.88 8.06 -52.48 -0.42 2.45 16 9 N -0.72 -18.14 2.96 -59.91 -0.18 -18.32 16 10 C 0.16 3.36 4.87 -4.04 -0.02 3.34 16 11 C 0.14 2.11 2.95 -67.60 -0.20 1.91 16 12 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.13 -1.44 5.37 -26.58 -0.14 -1.58 16 14 C -0.12 -0.99 5.89 -26.65 -0.16 -1.14 16 15 C -0.13 -0.99 6.08 -26.61 -0.16 -1.16 16 16 C 0.11 0.91 6.33 -3.71 -0.02 0.89 16 17 N -0.62 -8.24 2.97 -165.22 -0.49 -8.73 16 18 C 0.44 7.39 6.98 -10.98 -0.08 7.32 16 19 O -0.41 -9.22 9.34 5.56 0.05 -9.17 16 20 C 0.10 1.25 5.35 -5.19 -0.03 1.22 16 21 N -0.28 -4.71 3.20 -62.44 -0.20 -4.91 16 22 C -0.05 -0.82 10.89 -17.05 -0.19 -1.00 16 23 C 0.01 0.18 6.88 -82.78 -0.57 -0.39 16 24 C -0.07 -0.97 6.33 -91.78 -0.58 -1.55 16 25 C -0.17 -2.00 10.03 -26.69 -0.27 -2.27 16 26 C -0.16 -2.37 10.24 -26.70 -0.27 -2.65 16 27 N -0.26 -5.56 12.41 33.29 0.41 -5.15 16 28 N -0.04 -0.92 12.13 60.35 0.73 -0.19 16 29 H 0.26 8.19 8.31 -40.82 -0.34 7.86 16 30 H 0.35 8.85 4.68 -40.82 -0.19 8.66 16 31 H 0.05 1.08 6.50 -51.93 -0.34 0.75 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.46 5.96 -51.93 -0.31 0.15 16 41 H 0.12 1.07 8.05 -51.93 -0.42 0.65 16 42 H 0.12 1.07 7.45 -51.93 -0.39 0.68 16 43 H 0.18 2.10 7.44 -52.49 -0.39 1.71 16 44 H 0.12 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.09 1.06 7.22 -51.93 -0.38 0.69 16 46 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -40.52 378.81 -8.33 -48.85 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.50 Total: 7.42 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.93 Total: -3.78 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: 1.05 Total: -68.08 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.05 Total: -9.17 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.71 Total: 19.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -40.52 -8.33 -48.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566940025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.494 kcal (2) G-P(sol) polarization free energy of solvation -40.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds