Wall clock time and date at job start Tue Mar 31 2020 18:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00162 * 2 1 4 4 H 1.48492 * 109.46887 * 270.00061 * 3 2 1 5 5 H 1.48500 * 109.46803 * 30.00413 * 3 2 1 6 6 H 1.48502 * 109.47079 * 149.99794 * 3 2 1 7 7 C 1.38812 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00379 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00249 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47107 * 185.81944 * 10 9 7 12 12 H 1.08998 * 109.58300 * 53.15903 * 11 10 9 13 13 C 1.53191 * 109.58521 * 173.58808 * 11 10 9 14 14 C 1.53109 * 109.32778 * 174.42571 * 13 11 10 15 15 C 1.53039 * 109.50133 * 298.64940 * 14 13 11 16 16 C 1.53199 * 109.33479 * 61.35497 * 15 14 13 17 17 N 1.46925 * 109.58642 * 292.87699 * 11 10 9 18 18 C 1.34773 * 120.63085 * 6.58307 * 17 11 10 19 19 O 1.21279 * 120.00491 * 354.34702 * 18 17 11 20 20 C 1.50708 * 120.00036 * 174.35026 * 18 17 11 21 21 N 1.46503 * 109.47060 * 179.97438 * 20 18 17 22 22 C 1.35305 * 125.86592 * 124.71620 * 21 20 18 23 23 C 1.35349 * 106.17488 * 179.90225 * 22 21 20 24 24 C 1.50706 * 126.75299 * 180.12256 * 23 22 21 25 25 C 1.52998 * 117.49941 * 343.99761 * 24 23 22 26 26 C 1.52989 * 117.49977 * 275.33466 * 24 23 22 27 27 N 1.33766 * 106.49582 * 0.35394 * 23 22 21 28 28 N 1.28635 * 108.88885 * 359.76997 * 27 23 22 29 29 H 0.97006 * 119.99921 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99349 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46953 * 65.82026 * 10 9 7 32 32 H 1.09003 * 109.46730 * 305.82061 * 10 9 7 33 33 H 1.09003 * 109.49496 * 294.37150 * 13 11 10 34 34 H 1.08991 * 109.49686 * 54.43758 * 13 11 10 35 35 H 1.09002 * 109.49794 * 178.63100 * 14 13 11 36 36 H 1.08993 * 109.45214 * 58.64882 * 14 13 11 37 37 H 1.08999 * 109.50157 * 301.38843 * 15 14 13 38 38 H 1.08998 * 109.49741 * 181.31384 * 15 14 13 39 39 H 1.08999 * 109.58758 * 65.13533 * 16 15 14 40 40 H 1.09000 * 109.58095 * 185.55677 * 16 15 14 41 41 H 1.08995 * 109.46879 * 299.99947 * 20 18 17 42 42 H 1.08997 * 109.46747 * 59.99810 * 20 18 17 43 43 H 1.08002 * 126.91727 * 0.02562 * 22 21 20 44 44 H 1.08998 * 115.54536 * 129.66524 * 24 23 22 45 45 H 1.09007 * 117.49663 * 359.97438 * 25 24 23 46 46 H 1.08996 * 117.49860 * 145.01518 * 25 24 23 47 47 H 1.09005 * 117.50254 * 214.97865 * 26 24 23 48 48 H 1.09001 * 117.50104 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6098 -2.1951 0.1480 12 1 5.7815 -1.5663 1.0215 13 6 6.3625 -3.5196 0.3089 14 6 7.8694 -3.2486 0.3157 15 6 8.2809 -2.6173 -1.0163 16 6 7.5499 -1.2825 -1.1923 17 7 6.1053 -1.5128 -1.0552 18 6 5.2510 -1.1063 -2.0150 19 8 4.0747 -1.3920 -1.9407 20 6 5.7574 -0.2966 -3.1809 21 7 4.6426 0.0179 -4.0779 22 6 4.2742 1.2559 -4.4808 23 6 3.2082 1.0852 -5.2971 24 6 2.4331 2.1658 -6.0061 25 6 2.6213 3.6045 -5.5208 26 6 1.3159 2.8614 -5.2261 27 7 2.9748 -0.2311 -5.3468 28 7 3.8420 -0.8357 -4.6139 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3621 0.0014 31 1 3.9296 -2.9958 -0.9366 32 1 3.7726 -3.0865 0.8341 33 1 6.0735 -3.9904 1.2486 34 1 6.1153 -4.1817 -0.5208 35 1 8.4072 -4.1865 0.4545 36 1 8.1120 -2.5670 1.1309 37 1 8.0161 -3.2877 -1.8339 38 1 9.3573 -2.4458 -1.0205 39 1 7.8822 -0.5803 -0.4277 40 1 7.7631 -0.8769 -2.1813 41 1 6.2018 0.6289 -2.8148 42 1 6.5087 -0.8708 -3.7230 43 1 4.7386 2.1920 -4.2077 44 1 2.2801 2.0108 -7.0741 45 1 3.3055 3.7694 -4.6884 46 1 2.5918 4.3961 -6.2695 47 1 0.4280 3.1646 -5.7809 48 1 1.1411 2.5373 -4.2001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566940025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:14 Heat of formation + Delta-G solvation = 127.422268 kcal Electronic energy + Delta-G solvation = -30580.529488 eV Core-core repulsion = 26675.038522 eV Total energy + Delta-G solvation = -3905.490966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.26183 -41.59236 -38.47349 -38.11203 -36.76807 -35.33352 -33.93350 -33.76599 -32.00125 -31.70156 -29.67475 -27.81856 -25.78810 -25.07474 -24.15501 -23.98992 -23.27060 -22.47128 -21.78562 -21.33018 -20.29549 -19.61424 -18.52715 -18.03301 -17.22486 -16.79715 -16.74231 -16.38206 -16.22512 -15.84021 -15.68048 -15.47250 -15.33093 -14.93700 -14.81634 -14.64804 -14.17195 -14.03786 -13.81437 -13.56216 -13.43847 -13.31030 -12.97866 -12.73337 -12.58786 -12.37583 -12.26276 -12.17223 -12.04594 -11.91748 -11.77471 -11.73314 -11.49839 -11.41102 -11.25359 -11.15763 -11.00241 -10.03495 -9.97081 -9.63000 -8.93588 -8.01561 -5.24580 0.57516 1.15373 1.27168 1.32752 1.33476 1.49911 1.70871 2.04261 2.44371 2.80127 3.21894 3.30608 3.41675 3.59690 3.71340 3.81862 3.87716 3.89999 3.94121 3.99221 4.00527 4.11640 4.20027 4.27300 4.30822 4.36168 4.38203 4.61383 4.72664 4.73560 4.80043 4.82088 4.91341 4.94043 5.01110 5.11798 5.15119 5.15358 5.18006 5.23587 5.25132 5.30572 5.52722 5.56713 5.70495 5.74961 6.20636 6.47451 7.09618 7.34728 7.53564 7.87089 8.06502 9.22424 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.005336 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.058255 B = 5245.991204 C = 7031.376804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.995 5.995 2 C -0.080 4.080 3 Si 0.964 3.036 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.252 1.252 7 C -0.199 4.199 8 H 0.037 0.963 9 N -0.714 5.714 10 C 0.166 3.834 11 C 0.150 3.850 12 H 0.078 0.922 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.131 4.131 16 C 0.098 3.902 17 N -0.608 5.608 18 C 0.445 3.555 19 O -0.487 6.487 20 C 0.093 3.907 21 N -0.274 5.274 22 C -0.042 4.042 23 C -0.013 4.013 24 C -0.082 4.082 25 C -0.133 4.133 26 C -0.191 4.191 27 N -0.314 5.314 28 N -0.093 5.093 29 H 0.252 0.748 30 H 0.358 0.642 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.173 0.827 42 H 0.160 0.840 43 H 0.231 0.769 44 H 0.133 0.867 45 H 0.101 0.899 46 H 0.137 0.863 47 H 0.118 0.882 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.100 5.538 -6.793 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.648 5.648 2 C -0.269 4.269 3 Si 0.792 3.208 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.177 1.177 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.358 5.358 10 C 0.040 3.960 11 C 0.047 3.953 12 H 0.096 0.904 13 C -0.160 4.160 14 C -0.150 4.150 15 C -0.169 4.169 16 C -0.023 4.023 17 N -0.346 5.346 18 C 0.229 3.771 19 O -0.357 6.357 20 C -0.031 4.031 21 N -0.068 5.068 22 C -0.193 4.193 23 C -0.151 4.151 24 C -0.102 4.102 25 C -0.170 4.170 26 C -0.229 4.229 27 N -0.180 5.180 28 N -0.072 5.072 29 H 0.060 0.940 30 H 0.191 0.809 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.190 0.810 42 H 0.177 0.823 43 H 0.247 0.753 44 H 0.151 0.849 45 H 0.119 0.881 46 H 0.155 0.845 47 H 0.136 0.864 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 25.936 3.716 -6.860 27.084 hybrid contribution -0.579 1.382 0.370 1.543 sum 25.357 5.098 -6.490 26.666 Atomic orbital electron populations 1.69919 1.07199 1.25983 1.61684 1.25458 0.96153 1.01192 1.04109 0.85248 0.78542 0.79763 0.77249 1.21495 1.22146 1.17652 1.18900 0.83309 0.92579 1.38256 0.94539 1.42423 1.01704 1.03329 1.88378 1.20863 0.90259 0.88050 0.96803 1.21371 0.91968 0.94823 0.87186 0.90427 1.21874 0.96917 0.94807 1.02448 1.21507 0.93088 1.02044 0.98403 1.21923 1.01432 0.96021 0.97516 1.22162 0.76873 0.98674 1.04552 1.47993 1.08175 1.59356 1.19122 1.20970 0.87040 0.83648 0.85461 1.91334 1.17595 1.53469 1.73284 1.22431 0.85693 1.05618 0.89327 1.47037 1.22805 1.05333 1.31640 1.23849 1.01286 0.91377 1.02778 1.21620 0.98171 0.92367 1.02937 1.20122 1.01345 0.90113 0.98593 1.23174 0.97767 0.92436 1.03638 1.23007 0.94777 1.05068 1.00017 1.74956 1.18479 1.07072 1.17522 1.78295 1.00619 1.19224 1.09014 0.93951 0.80867 0.96557 0.96649 0.90377 0.92712 0.90311 0.90685 0.92320 0.87676 0.89283 0.87242 0.81007 0.82261 0.75304 0.84939 0.88068 0.84453 0.86371 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -70.96 13.97 21.65 0.30 -70.66 16 2 C -0.08 -5.27 5.50 84.86 0.47 -4.80 16 3 Si 0.96 50.47 27.74 68.60 1.90 52.37 16 4 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 5 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 6 H -0.25 -11.59 6.52 99.48 0.65 -10.94 16 7 C -0.20 -12.90 10.17 84.03 0.85 -12.05 16 8 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 9 N -0.71 -37.19 2.96 -343.45 -1.02 -38.21 16 10 C 0.17 7.14 4.87 86.38 0.42 7.56 16 11 C 0.15 4.24 2.95 44.97 0.13 4.37 16 12 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.12 -2.54 5.37 30.69 0.16 -2.38 16 14 C -0.11 -1.41 5.89 30.64 0.18 -1.23 16 15 C -0.13 -1.24 6.08 30.67 0.19 -1.05 16 16 C 0.10 1.06 6.33 86.36 0.55 1.61 16 17 N -0.61 -14.35 2.97 -795.02 -2.36 -16.71 16 18 C 0.45 13.93 6.98 87.66 0.61 14.54 16 19 O -0.49 -22.71 9.34 -3.03 -0.03 -22.74 16 20 C 0.09 1.94 5.35 85.63 0.46 2.40 16 21 N -0.27 -8.81 3.20 -351.47 -1.12 -9.93 16 22 C -0.04 -1.23 10.89 83.49 0.91 -0.32 16 23 C -0.01 -0.45 6.88 41.60 0.29 -0.16 16 24 C -0.08 -2.24 6.33 -11.54 -0.07 -2.31 16 25 C -0.13 -2.63 10.03 30.62 0.31 -2.32 16 26 C -0.19 -5.48 10.24 30.61 0.31 -5.17 16 27 N -0.31 -13.87 12.41 -48.60 -0.60 -14.48 16 28 N -0.09 -3.96 12.13 37.02 0.45 -3.51 16 29 H 0.25 17.09 8.31 -92.70 -0.77 16.32 16 30 H 0.36 17.68 4.68 -92.71 -0.43 17.25 16 31 H 0.02 0.82 6.50 -2.39 -0.02 0.80 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 0.50 5.96 -2.39 -0.01 0.49 16 41 H 0.17 1.83 8.05 -2.39 -0.02 1.81 16 42 H 0.16 2.02 7.45 -2.39 -0.02 2.00 16 43 H 0.23 4.04 7.44 -2.91 -0.02 4.02 16 44 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.10 1.85 7.22 -2.38 -0.02 1.83 16 46 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 48 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -102.81 378.81 3.76 -99.05 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.48 Total: 26.12 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.77 Total: -1.30 kcal Atomic # 7 Polarization: -149.15 SS G_CDS: -4.35 Total: -153.50 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.03 Total: -22.74 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.90 Total: 52.37 kcal Total: -102.81 3.76 -99.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566940025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.474 kcal (2) G-P(sol) polarization free energy of solvation -102.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds