Wall clock time and date at job start Tue Mar 31 2020 18:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48500 * 109.47400 * 240.00366 * 3 2 1 5 5 H 1.48500 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47073 * 120.00270 * 3 2 1 7 7 C 1.38813 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99985 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46965 * 174.96001 * 10 9 7 12 12 N 1.46500 * 110.43535 * 307.77005 * 11 10 9 13 13 C 1.34780 * 119.99874 * 302.99785 * 12 11 10 14 14 O 1.21591 * 119.99867 * 354.55666 * 13 12 11 15 15 C 1.47525 * 120.00145 * 174.55610 * 13 12 11 16 16 C 1.36595 * 125.77282 * 180.02562 * 15 13 12 17 17 N 1.34816 * 106.83978 * 179.97438 * 16 15 13 18 18 C 1.46500 * 126.59120 * 179.97438 * 17 16 15 19 19 C 1.53783 * 113.61728 * 345.86693 * 18 17 16 20 20 C 1.53952 * 87.01952 * 89.22565 * 19 18 17 21 21 C 1.53776 * 87.11401 * 25.36344 * 20 19 18 22 22 N 1.40203 * 106.81057 * 0.23647 * 17 16 15 23 23 N 1.28768 * 108.36756 * 359.59254 * 22 17 16 24 24 C 1.54887 * 110.48424 * 70.30966 * 11 10 9 25 25 C 1.55241 * 102.58658 * 156.67760 * 24 11 10 26 26 C 1.54269 * 104.23099 * 322.08236 * 25 24 11 27 27 C 1.53873 * 106.59755 * 23.61365 * 26 25 24 28 28 H 0.97002 * 119.99618 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99966 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46946 * 54.96636 * 10 9 7 31 31 H 1.08991 * 109.47504 * 294.96043 * 10 9 7 32 32 H 0.96992 * 120.00122 * 123.00144 * 12 11 10 33 33 H 1.08004 * 126.57846 * 359.97392 * 16 15 13 34 34 H 1.08994 * 112.85027 * 214.66463 * 18 17 16 35 35 H 1.08992 * 113.61398 * 203.75090 * 19 18 17 36 36 H 1.09001 * 113.61234 * 334.64686 * 19 18 17 37 37 H 1.09004 * 113.54011 * 270.80811 * 20 19 18 38 38 H 1.09005 * 113.73879 * 139.94625 * 20 19 18 39 39 H 1.08993 * 113.61625 * 220.08821 * 21 20 19 40 40 H 1.08999 * 113.61738 * 89.18368 * 21 20 19 41 41 H 1.08999 * 110.75540 * 275.06231 * 24 11 10 42 42 H 1.08992 * 110.76078 * 38.43633 * 24 11 10 43 43 H 1.08997 * 110.46560 * 203.39361 * 25 24 11 44 44 H 1.08999 * 110.46969 * 80.77337 * 25 24 11 45 45 H 1.08997 * 110.03414 * 264.32841 * 26 25 24 46 46 H 1.08995 * 110.03345 * 142.89721 * 26 25 24 47 47 H 1.09005 * 110.03333 * 240.71611 * 27 26 25 48 48 H 1.08995 * 110.03225 * 119.28582 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0686 -4.8170 0.1253 12 7 0.1831 -4.6107 1.2740 13 6 0.7047 -4.4454 2.5058 14 8 1.9020 -4.5657 2.6802 15 6 -0.1771 -4.1184 3.6424 16 6 0.2234 -3.9258 4.9341 17 7 -0.8852 -3.6487 5.6495 18 6 -0.9503 -3.3697 7.0862 19 6 0.3336 -3.7442 7.8454 20 6 0.8339 -2.3207 7.5394 21 6 -0.6437 -1.9057 7.4438 22 7 -1.9645 -3.6851 4.7553 23 7 -1.5102 -3.9590 3.5820 24 6 0.2421 -4.9694 -1.1757 25 6 -0.2084 -6.4538 -1.1184 26 6 1.0098 -7.1975 -0.5329 27 6 1.8217 -6.1568 0.2579 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.7512 -3.6768 0.8393 31 1 2.6145 -3.7543 -0.9337 32 1 -0.7785 -4.5931 1.1482 33 1 1.2342 -3.9842 5.3100 34 1 -1.8594 -3.7514 7.5508 35 1 0.1739 -3.9322 8.9070 36 1 0.9160 -4.5267 7.3588 37 1 1.3716 -2.2420 6.5945 38 1 1.3656 -1.8547 8.3691 39 1 -0.8492 -1.2061 6.6337 40 1 -1.0711 -1.5901 8.3956 41 1 -0.6190 -4.3012 -1.1668 42 1 0.8641 -4.7878 -2.0521 43 1 -0.4355 -6.8221 -2.1188 44 1 -1.0734 -6.5647 -0.4645 45 1 1.6169 -7.6114 -1.3380 46 1 0.6766 -7.9946 0.1317 47 1 2.8229 -6.0656 -0.1635 48 1 1.8825 -6.4488 1.3062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567998145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:25 Heat of formation + Delta-G solvation = 93.028984 kcal Electronic energy + Delta-G solvation = -29778.274243 eV Core-core repulsion = 25871.291873 eV Total energy + Delta-G solvation = -3906.982370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21467 -39.84269 -39.03414 -37.25600 -34.21708 -33.19474 -32.54013 -31.14423 -30.51658 -28.51831 -28.05344 -26.35048 -26.20608 -24.44120 -23.35938 -22.57954 -22.08907 -20.72997 -20.25614 -19.88131 -18.75127 -17.66335 -16.98023 -16.36560 -16.32459 -15.76955 -15.42299 -14.92001 -14.71397 -14.49057 -14.41686 -14.22935 -13.93983 -13.61147 -13.10320 -12.99950 -12.87330 -12.76763 -12.51623 -12.08080 -11.98814 -11.47845 -11.37531 -11.30936 -11.20061 -11.12409 -10.98501 -10.80875 -10.80719 -10.74740 -10.65221 -10.31125 -10.23663 -10.16725 -9.97433 -9.60790 -9.44919 -9.08396 -8.71362 -8.41180 -6.75491 -5.64044 -2.90491 1.25405 1.98588 2.01514 3.48253 3.50216 3.53965 3.55409 3.76737 3.85042 3.99707 4.32521 4.36198 4.44383 4.67000 4.76958 4.87956 4.91845 4.98118 5.06912 5.12517 5.14774 5.22845 5.34386 5.48529 5.57490 5.61228 5.62049 5.70376 5.72173 5.76291 5.79742 5.87047 5.99023 6.03919 6.08021 6.11849 6.30942 6.39867 6.45553 6.48172 6.53819 6.66513 6.70574 7.00340 7.22282 7.81220 7.94267 8.19902 8.54864 8.71452 9.65998 10.25827 10.61680 11.58765 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.007803 B = 0.004843 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.437594 B = 5779.665147 C = 8329.896571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.230 4.230 8 H 0.067 0.933 9 N -0.725 5.725 10 C 0.145 3.855 11 C 0.170 3.830 12 N -0.691 5.691 13 C 0.615 3.385 14 O -0.536 6.536 15 C -0.087 4.087 16 C 0.089 3.911 17 N -0.346 5.346 18 C 0.121 3.879 19 C -0.144 4.144 20 C -0.149 4.149 21 C -0.146 4.146 22 N -0.067 5.067 23 N -0.199 5.199 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.124 4.124 28 H 0.253 0.747 29 H 0.383 0.617 30 H 0.045 0.955 31 H 0.021 0.979 32 H 0.403 0.597 33 H 0.199 0.801 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 -13.356 13.435 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.361 4.361 8 H 0.085 0.915 9 N -0.369 5.369 10 C 0.017 3.983 11 C 0.084 3.916 12 N -0.341 5.341 13 C 0.399 3.601 14 O -0.412 6.412 15 C -0.227 4.227 16 C -0.068 4.068 17 N -0.132 5.132 18 C 0.018 3.982 19 C -0.182 4.182 20 C -0.187 4.187 21 C -0.185 4.185 22 N -0.046 5.046 23 N -0.073 5.073 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.163 4.163 28 H 0.063 0.937 29 H 0.217 0.783 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.238 0.762 33 H 0.216 0.784 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.163 -13.140 13.400 18.892 hybrid contribution 0.694 1.132 0.244 1.350 sum -1.469 -12.008 13.644 18.235 Atomic orbital electron populations 1.69652 1.04949 1.25380 1.58303 1.24675 0.95452 0.97372 1.03604 0.86325 0.78505 0.83968 0.77764 1.21353 1.21848 1.21544 1.19173 0.90904 0.84250 1.41791 0.91491 1.42209 1.05728 0.99657 1.89290 1.21068 0.93479 0.85080 0.98702 1.21408 0.90607 0.95056 0.84567 1.45553 1.10317 1.72235 1.05953 1.16524 0.86025 0.76154 0.81380 1.90744 1.14216 1.51872 1.84336 1.21581 0.91093 1.15079 0.94909 1.23198 0.94257 0.97703 0.91596 1.50120 1.06256 1.47641 1.09138 1.22413 1.01656 0.99010 0.75115 1.23419 0.94767 0.98673 1.01380 1.23091 0.96721 0.95553 1.03317 1.23355 0.96856 0.94875 1.03390 1.81970 1.07962 1.22344 0.92373 1.74623 1.09230 1.09140 1.14291 1.22794 1.00318 0.95821 0.96783 1.22469 0.97799 0.95594 1.00492 1.22129 0.96806 0.97920 0.99118 1.22452 0.98938 0.93681 1.01188 0.93727 0.78318 0.93732 0.96129 0.76195 0.78414 0.86273 0.87294 0.89940 0.89375 0.90040 0.89966 0.87667 0.90454 0.89733 0.91803 0.91825 0.92083 0.92411 0.90970 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 23.31 29.55 -169.99 -5.02 18.28 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.72 -19.02 5.30 -59.91 -0.32 -19.33 16 10 C 0.15 3.16 4.72 -4.04 -0.02 3.14 16 11 C 0.17 2.94 0.39 -130.16 -0.05 2.89 16 12 N -0.69 -12.27 4.54 -47.10 -0.21 -12.49 16 13 C 0.62 11.69 7.06 -12.47 -0.09 11.61 16 14 O -0.54 -11.06 13.82 5.29 0.07 -10.99 16 15 C -0.09 -1.53 6.99 -83.55 -0.58 -2.11 16 16 C 0.09 1.26 9.41 -16.83 -0.16 1.11 16 17 N -0.35 -4.53 3.81 -53.77 -0.21 -4.73 16 18 C 0.12 1.04 5.19 -67.11 -0.35 0.69 16 19 C -0.14 -0.89 7.36 -25.83 -0.19 -1.08 16 20 C -0.15 -1.13 7.67 -25.83 -0.20 -1.33 16 21 C -0.15 -1.18 7.88 -25.92 -0.20 -1.39 16 22 N -0.07 -1.10 13.78 60.35 0.83 -0.27 16 23 N -0.20 -3.58 12.05 32.85 0.40 -3.18 16 24 C -0.12 -1.83 5.67 -24.55 -0.14 -1.97 16 25 C -0.13 -1.55 6.80 -24.88 -0.17 -1.72 16 26 C -0.12 -1.49 6.80 -25.61 -0.17 -1.67 16 27 C -0.12 -1.85 5.68 -25.61 -0.15 -2.00 16 28 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.38 10.49 7.27 -40.82 -0.30 10.19 16 30 H 0.04 1.07 6.48 -51.93 -0.34 0.73 16 31 H 0.02 0.45 8.02 -51.93 -0.42 0.03 16 32 H 0.40 6.81 8.19 -40.82 -0.33 6.48 16 33 H 0.20 2.32 6.76 -52.48 -0.35 1.96 16 34 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.53 7.10 -51.93 -0.37 0.16 16 37 H 0.09 0.84 6.92 -51.93 -0.36 0.48 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.08 1.31 7.97 -51.93 -0.41 0.89 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.06 7.84 -51.93 -0.41 0.66 16 48 H 0.07 1.19 6.63 -51.93 -0.34 0.85 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -35.11 385.04 -8.05 -43.16 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -7.40 Total: 13.38 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.72 Total: -1.25 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: 1.22 Total: -68.39 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.07 Total: -10.99 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.11 -8.05 -43.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567998145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.187 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds