Wall clock time and date at job start Tue Mar 31 2020 18:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48500 * 109.47400 * 240.00366 * 3 2 1 5 5 H 1.48500 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47073 * 120.00270 * 3 2 1 7 7 C 1.38813 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99985 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46965 * 174.96001 * 10 9 7 12 12 N 1.46500 * 110.43535 * 307.77005 * 11 10 9 13 13 C 1.34780 * 119.99874 * 302.99785 * 12 11 10 14 14 O 1.21591 * 119.99867 * 354.55666 * 13 12 11 15 15 C 1.47525 * 120.00145 * 174.55610 * 13 12 11 16 16 C 1.36595 * 125.77282 * 180.02562 * 15 13 12 17 17 N 1.34816 * 106.83978 * 179.97438 * 16 15 13 18 18 C 1.46500 * 126.59120 * 179.97438 * 17 16 15 19 19 C 1.53783 * 113.61728 * 345.86693 * 18 17 16 20 20 C 1.53952 * 87.01952 * 89.22565 * 19 18 17 21 21 C 1.53776 * 87.11401 * 25.36344 * 20 19 18 22 22 N 1.40203 * 106.81057 * 0.23647 * 17 16 15 23 23 N 1.28768 * 108.36756 * 359.59254 * 22 17 16 24 24 C 1.54887 * 110.48424 * 70.30966 * 11 10 9 25 25 C 1.55241 * 102.58658 * 156.67760 * 24 11 10 26 26 C 1.54269 * 104.23099 * 322.08236 * 25 24 11 27 27 C 1.53873 * 106.59755 * 23.61365 * 26 25 24 28 28 H 0.97002 * 119.99618 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99966 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46946 * 54.96636 * 10 9 7 31 31 H 1.08991 * 109.47504 * 294.96043 * 10 9 7 32 32 H 0.96992 * 120.00122 * 123.00144 * 12 11 10 33 33 H 1.08004 * 126.57846 * 359.97392 * 16 15 13 34 34 H 1.08994 * 112.85027 * 214.66463 * 18 17 16 35 35 H 1.08992 * 113.61398 * 203.75090 * 19 18 17 36 36 H 1.09001 * 113.61234 * 334.64686 * 19 18 17 37 37 H 1.09004 * 113.54011 * 270.80811 * 20 19 18 38 38 H 1.09005 * 113.73879 * 139.94625 * 20 19 18 39 39 H 1.08993 * 113.61625 * 220.08821 * 21 20 19 40 40 H 1.08999 * 113.61738 * 89.18368 * 21 20 19 41 41 H 1.08999 * 110.75540 * 275.06231 * 24 11 10 42 42 H 1.08992 * 110.76078 * 38.43633 * 24 11 10 43 43 H 1.08997 * 110.46560 * 203.39361 * 25 24 11 44 44 H 1.08999 * 110.46969 * 80.77337 * 25 24 11 45 45 H 1.08997 * 110.03414 * 264.32841 * 26 25 24 46 46 H 1.08995 * 110.03345 * 142.89721 * 26 25 24 47 47 H 1.09005 * 110.03333 * 240.71611 * 27 26 25 48 48 H 1.08995 * 110.03225 * 119.28582 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0686 -4.8170 0.1253 12 7 0.1831 -4.6107 1.2740 13 6 0.7047 -4.4454 2.5058 14 8 1.9020 -4.5657 2.6802 15 6 -0.1771 -4.1184 3.6424 16 6 0.2234 -3.9258 4.9341 17 7 -0.8852 -3.6487 5.6495 18 6 -0.9503 -3.3697 7.0862 19 6 0.3336 -3.7442 7.8454 20 6 0.8339 -2.3207 7.5394 21 6 -0.6437 -1.9057 7.4438 22 7 -1.9645 -3.6851 4.7553 23 7 -1.5102 -3.9590 3.5820 24 6 0.2421 -4.9694 -1.1757 25 6 -0.2084 -6.4538 -1.1184 26 6 1.0098 -7.1975 -0.5329 27 6 1.8217 -6.1568 0.2579 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.7512 -3.6768 0.8393 31 1 2.6145 -3.7543 -0.9337 32 1 -0.7785 -4.5931 1.1482 33 1 1.2342 -3.9842 5.3100 34 1 -1.8594 -3.7514 7.5508 35 1 0.1739 -3.9322 8.9070 36 1 0.9160 -4.5267 7.3588 37 1 1.3716 -2.2420 6.5945 38 1 1.3656 -1.8547 8.3691 39 1 -0.8492 -1.2061 6.6337 40 1 -1.0711 -1.5901 8.3956 41 1 -0.6190 -4.3012 -1.1668 42 1 0.8641 -4.7878 -2.0521 43 1 -0.4355 -6.8221 -2.1188 44 1 -1.0734 -6.5647 -0.4645 45 1 1.6169 -7.6114 -1.3380 46 1 0.6766 -7.9946 0.1317 47 1 2.8229 -6.0656 -0.1635 48 1 1.8825 -6.4488 1.3062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567998145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:24 Heat of formation + Delta-G solvation = 68.326607 kcal Electronic energy + Delta-G solvation = -29779.345419 eV Core-core repulsion = 25871.291873 eV Total energy + Delta-G solvation = -3908.053546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.38275 -41.22200 -39.81635 -38.63897 -36.17124 -34.54890 -33.77526 -33.02170 -31.93576 -29.78681 -29.55330 -27.22734 -26.82319 -26.30856 -24.69204 -23.95410 -23.56823 -21.97676 -21.36587 -20.90397 -20.19598 -19.11041 -18.71844 -17.41512 -17.24373 -17.23783 -16.50260 -16.36437 -16.09962 -15.89729 -15.60048 -15.46875 -15.35037 -15.07331 -14.89576 -14.35475 -14.01192 -13.79590 -13.68010 -13.46986 -13.25037 -13.18828 -12.79756 -12.52396 -12.51556 -12.36986 -12.20860 -12.07792 -12.04226 -11.91549 -11.90561 -11.75350 -11.65652 -11.51701 -11.26982 -11.13170 -11.08341 -10.75987 -10.35304 -9.86877 -8.94583 -7.93497 -5.20399 0.09344 0.65167 1.00507 1.41937 1.45463 1.51553 2.11823 2.41554 2.54995 3.04924 3.19338 3.35058 3.38862 3.52078 3.66210 3.72754 3.73796 3.81948 3.90359 3.97806 4.15244 4.20566 4.39254 4.43415 4.53557 4.60080 4.67247 4.69187 4.70467 4.76108 4.85869 4.87488 4.90106 4.92633 4.96016 4.99828 5.10186 5.15622 5.16860 5.19139 5.31973 5.36961 5.46460 5.53996 5.55090 5.73943 6.27493 6.53690 6.90117 7.26150 7.34667 8.11505 8.37807 9.29290 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.007803 B = 0.004843 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.437594 B = 5779.665147 C = 8329.896571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.067 0.933 9 N -0.731 5.731 10 C 0.146 3.854 11 C 0.169 3.831 12 N -0.687 5.687 13 C 0.609 3.391 14 O -0.560 6.560 15 C -0.119 4.119 16 C 0.101 3.899 17 N -0.330 5.330 18 C 0.099 3.901 19 C -0.124 4.124 20 C -0.155 4.155 21 C -0.143 4.143 22 N -0.087 5.087 23 N -0.223 5.223 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.118 4.118 28 H 0.249 0.751 29 H 0.375 0.625 30 H 0.022 0.978 31 H 0.026 0.974 32 H 0.406 0.594 33 H 0.222 0.778 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.138 0.862 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -14.426 14.840 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.372 4.372 8 H 0.085 0.915 9 N -0.373 5.373 10 C 0.019 3.981 11 C 0.083 3.917 12 N -0.337 5.337 13 C 0.394 3.606 14 O -0.438 6.438 15 C -0.259 4.259 16 C -0.057 4.057 17 N -0.115 5.115 18 C -0.002 4.002 19 C -0.162 4.162 20 C -0.192 4.192 21 C -0.182 4.182 22 N -0.066 5.066 23 N -0.096 5.096 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.157 4.157 28 H 0.058 0.942 29 H 0.207 0.793 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.241 0.759 33 H 0.239 0.761 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.066 0.934 40 H 0.156 0.844 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.740 -14.235 14.811 20.616 hybrid contribution 0.600 1.498 -0.087 1.616 sum -1.139 -12.737 14.724 19.502 Atomic orbital electron populations 1.69819 1.06403 1.25795 1.59665 1.25466 0.96335 1.00693 1.03984 0.85286 0.77275 0.79565 0.78117 1.20108 1.21991 1.20987 1.19529 0.91162 0.85603 1.40950 0.91512 1.42311 1.05419 1.00518 1.89085 1.21150 0.94126 0.85154 0.97701 1.21435 0.90347 0.94397 0.85559 1.45569 1.10484 1.71755 1.05845 1.16808 0.86011 0.75741 0.82026 1.90710 1.15119 1.53185 1.84831 1.21624 0.91206 1.17297 0.95756 1.23509 0.95365 0.96072 0.90719 1.50443 1.05006 1.45550 1.10468 1.23059 1.04343 1.00034 0.72740 1.23463 0.92393 0.97452 1.02892 1.23100 0.96270 0.97072 1.02805 1.23440 0.97573 0.93482 1.03663 1.81844 1.09246 1.22964 0.92572 1.74580 1.09592 1.10103 1.15321 1.22766 0.99337 0.98035 0.95415 1.22427 0.97906 0.92925 1.02017 1.22098 0.96395 0.97128 0.99479 1.22392 0.99235 0.92993 1.01062 0.94237 0.79280 0.95996 0.95627 0.75885 0.76146 0.84093 0.83662 0.89995 0.92035 0.88115 0.93449 0.84368 0.92056 0.89802 0.89477 0.91450 0.90096 0.91112 0.90887 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 2 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.97 48.50 29.55 68.60 2.03 50.53 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 7 C -0.24 -14.33 9.99 84.03 0.84 -13.49 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 9 N -0.73 -39.56 5.30 -343.44 -1.82 -41.39 16 10 C 0.15 6.56 4.72 86.38 0.41 6.97 16 11 C 0.17 5.94 0.39 4.68 0.00 5.94 16 12 N -0.69 -25.29 4.54 -421.19 -1.91 -27.20 16 13 C 0.61 24.07 7.06 86.69 0.61 24.68 16 14 O -0.56 -23.98 13.82 -4.00 -0.06 -24.03 16 15 C -0.12 -4.31 6.99 40.82 0.29 -4.03 16 16 C 0.10 2.91 9.41 83.85 0.79 3.70 16 17 N -0.33 -8.54 3.81 -324.03 -1.24 -9.78 16 18 C 0.10 1.52 5.19 45.52 0.24 1.76 16 19 C -0.12 -1.15 7.36 31.18 0.23 -0.92 16 20 C -0.16 -2.07 7.67 31.18 0.24 -1.83 16 21 C -0.14 -2.10 7.88 31.12 0.25 -1.85 16 22 N -0.09 -2.90 13.78 37.02 0.51 -2.39 16 23 N -0.22 -8.32 12.05 -50.00 -0.60 -8.92 16 24 C -0.12 -3.58 5.67 32.01 0.18 -3.40 16 25 C -0.12 -2.61 6.80 31.79 0.22 -2.40 16 26 C -0.11 -2.51 6.80 31.32 0.21 -2.30 16 27 C -0.12 -3.48 5.68 31.32 0.18 -3.30 16 28 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.37 21.33 7.27 -92.71 -0.67 20.66 16 30 H 0.02 1.09 6.48 -2.39 -0.02 1.08 16 31 H 0.03 1.13 8.02 -2.39 -0.02 1.11 16 32 H 0.41 14.33 8.19 -92.71 -0.76 13.58 16 33 H 0.22 5.13 6.76 -2.91 -0.02 5.11 16 34 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.08 0.84 7.10 -2.39 -0.02 0.82 16 37 H 0.06 1.16 6.92 -2.38 -0.02 1.14 16 38 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 42 H 0.08 2.55 7.97 -2.39 -0.02 2.53 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 47 H 0.07 2.11 7.84 -2.38 -0.02 2.09 16 48 H 0.06 1.97 6.63 -2.39 -0.02 1.95 16 Total: -1.00 -78.69 385.04 1.89 -76.79 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -0.44 Total: 42.10 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.14 Total: 5.63 kcal Atomic # 7 Polarization: -146.23 SS G_CDS: -4.78 Total: -151.01 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -78.69 1.89 -76.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567998145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.121 kcal (2) G-P(sol) polarization free energy of solvation -78.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds