Wall clock time and date at job start Tue Mar 31 2020 17:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00384 * 2 1 4 4 H 1.48504 * 109.47116 * 240.00261 * 3 2 1 5 5 H 1.48501 * 109.47002 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47020 * 120.00053 * 3 2 1 7 7 C 1.38812 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00280 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00285 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47003 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47469 * 295.00011 * 11 10 9 13 13 N 1.46497 * 109.47017 * 55.00665 * 11 10 9 14 14 C 1.34780 * 119.99566 * 205.00005 * 13 11 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 11 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 13 18 18 N 1.29109 * 126.01027 * 269.68733 * 17 16 14 19 19 N 1.29019 * 110.25785 * 179.77655 * 18 17 16 20 20 C 1.32906 * 108.63940 * 0.41820 * 19 18 17 21 21 C 1.34405 * 126.00576 * 90.00356 * 17 16 14 22 22 C 1.50529 * 129.25156 * 0.20168 * 21 17 16 23 23 C 1.53440 * 108.32052 * 163.46542 * 22 21 17 24 24 C 1.53103 * 109.55289 * 49.72324 * 23 22 21 25 25 C 1.50594 * 129.16879 * 179.85984 * 20 19 18 26 26 C 1.53003 * 109.46917 * 175.00593 * 11 10 9 27 27 C 1.53000 * 117.49712 * 248.74819 * 26 11 10 28 28 C 1.52993 * 117.49846 * 180.09022 * 26 11 10 29 29 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99820 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46519 * 60.00423 * 10 9 7 32 32 H 1.09000 * 109.47088 * 300.00587 * 10 9 7 33 33 H 0.96995 * 120.00423 * 24.99311 * 13 11 10 34 34 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 35 35 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 36 36 H 1.08996 * 109.69773 * 283.17296 * 22 21 17 37 37 H 1.08998 * 109.69342 * 43.76179 * 22 21 17 38 38 H 1.09007 * 109.45477 * 169.74234 * 23 22 21 39 39 H 1.08994 * 109.46211 * 289.70983 * 23 22 21 40 40 H 1.09001 * 109.45800 * 49.96711 * 24 23 22 41 41 H 1.08998 * 109.45266 * 169.90256 * 24 23 22 42 42 H 1.09003 * 109.69221 * 43.75963 * 25 20 19 43 43 H 1.08997 * 109.72356 * 283.20073 * 25 20 19 44 44 H 1.08998 * 115.54950 * 34.40898 * 26 11 10 45 45 H 1.09007 * 117.49634 * 359.97438 * 27 26 11 46 46 H 1.09003 * 117.50432 * 145.01742 * 27 26 11 47 47 H 1.09002 * 117.49525 * 214.97600 * 28 26 11 48 48 H 1.08997 * 117.50443 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.0635 -4.8197 -0.0021 12 1 0.4977 -4.8143 0.9295 13 7 0.1438 -4.6753 -1.1331 14 6 -1.0808 -5.2361 -1.0817 15 8 -1.4210 -5.8606 -0.0993 16 6 -2.0268 -5.0880 -2.2454 17 7 -3.2815 -5.7825 -1.9461 18 7 -3.5504 -7.0154 -2.2189 19 7 -4.7401 -7.3126 -1.8175 20 6 -5.2841 -6.2330 -1.2653 21 6 -4.3572 -5.2464 -1.3445 22 6 -4.5649 -3.8445 -0.8371 23 6 -6.0685 -3.6274 -0.6217 24 6 -6.6413 -4.7866 0.1980 25 6 -6.6493 -6.0632 -0.6529 26 6 1.8243 -6.1412 -0.1288 27 6 1.6658 -6.9252 -1.4331 28 6 1.0014 -7.4308 -0.1501 29 1 -0.4849 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0005 31 1 2.6851 -3.7150 0.8879 32 1 2.6839 -3.7143 -0.8921 33 1 0.4159 -4.1761 -1.9189 34 1 -2.2284 -4.0308 -2.4175 35 1 -1.5757 -5.5219 -3.1378 36 1 -4.0358 -3.7133 0.1067 37 1 -4.1919 -3.1295 -1.5704 38 1 -6.2270 -2.6911 -0.0864 39 1 -6.5711 -3.5829 -1.5878 40 1 -6.0255 -4.9444 1.0835 41 1 -7.6601 -4.5471 0.5028 42 1 -6.8790 -6.9229 -0.0232 43 1 -7.3974 -5.9748 -1.4407 44 1 2.7968 -6.1727 0.3623 45 1 1.0192 -6.4998 -2.2006 46 1 2.5339 -7.4730 -1.7998 47 1 1.4327 -8.3109 0.3268 48 1 -0.0819 -7.3380 -0.0734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569320624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:49 Heat of formation + Delta-G solvation = 95.524272 kcal Electronic energy + Delta-G solvation = -29543.445798 eV Core-core repulsion = 25636.571631 eV Total energy + Delta-G solvation = -3906.874167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.36418 -40.20842 -37.44334 -37.08273 -35.02958 -34.72650 -33.50458 -31.43566 -30.64442 -30.12962 -29.02974 -27.61341 -24.22069 -24.16654 -22.72294 -22.32556 -22.28043 -21.57288 -20.56082 -19.84667 -19.63448 -17.85888 -17.41596 -17.13185 -16.24744 -16.04790 -15.65137 -15.06225 -14.83221 -14.63826 -14.10282 -14.05996 -13.96377 -13.83441 -13.66978 -13.41967 -13.35316 -13.03078 -12.56536 -12.22411 -12.19593 -11.76810 -11.52248 -11.47280 -11.33490 -11.25137 -11.10822 -11.09439 -10.99775 -10.89499 -10.47293 -10.42017 -10.30174 -10.16768 -9.90973 -9.68486 -9.61616 -9.03414 -8.88938 -8.75825 -7.09245 -5.90673 -3.20337 1.55943 2.16429 2.46777 2.61689 3.20103 3.35177 3.40648 3.40705 3.97499 4.11306 4.38022 4.44406 4.55034 4.59089 4.67966 4.75557 4.81974 4.83504 4.89464 5.09305 5.12249 5.25245 5.37142 5.42064 5.43749 5.44351 5.46559 5.62849 5.71525 5.77368 5.78780 5.86931 5.87130 5.92271 5.98977 6.03049 6.12608 6.15971 6.20379 6.29086 6.33122 6.44184 6.54492 6.55008 6.73723 7.50239 7.57195 8.15410 8.27592 8.58247 9.39792 9.93406 10.29167 11.31715 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.003775 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.284942 B = 7415.668105 C = 9685.511584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.171 3.829 12 H 0.092 0.908 13 N -0.700 5.700 14 C 0.504 3.496 15 O -0.520 6.520 16 C 0.092 3.908 17 N -0.265 5.265 18 N -0.089 5.089 19 N -0.263 5.263 20 C -0.026 4.026 21 C 0.001 3.999 22 C -0.051 4.051 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.030 4.030 26 C -0.162 4.162 27 C -0.175 4.175 28 C -0.186 4.186 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.408 0.592 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 -9.673 -4.498 13.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.067 3.933 12 H 0.110 0.890 13 N -0.351 5.351 14 C 0.287 3.713 15 O -0.396 6.396 16 C -0.034 4.034 17 N -0.056 5.056 18 N -0.067 5.067 19 N -0.128 5.128 20 C -0.166 4.166 21 C -0.132 4.132 22 C -0.090 4.090 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.069 4.069 26 C -0.181 4.181 27 C -0.212 4.212 28 C -0.223 4.223 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.243 0.757 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.780 -11.325 -4.425 14.435 hybrid contribution 0.410 2.187 0.014 2.225 sum -7.370 -9.138 -4.411 12.541 Atomic orbital electron populations 1.69638 1.05120 1.25896 1.57410 1.24721 0.95520 0.97689 1.02631 0.86265 0.78565 0.83394 0.77917 1.21222 1.21650 1.21214 1.19169 0.91058 0.83992 1.43300 0.91144 1.42321 1.05882 0.99724 1.89715 1.20926 0.92983 0.84908 0.99202 1.20804 0.89999 0.93109 0.89434 0.89012 1.45857 1.13866 1.54051 1.21362 1.20240 0.82815 0.79970 0.88270 1.90729 1.75662 1.40397 1.32846 1.21898 0.81883 1.00075 0.99552 1.46218 1.11521 1.09133 1.38762 1.78550 1.11331 0.95310 1.21507 1.74745 1.00893 1.24227 1.12887 1.21565 0.99098 0.89869 1.06056 1.21819 0.88285 0.99588 1.03539 1.20261 0.98374 0.88436 1.01952 1.21561 0.93550 0.98973 1.00971 1.21652 1.01698 0.93939 0.98622 1.19914 0.89852 0.98663 0.98442 1.22699 1.00892 0.92356 1.02179 1.22869 1.02956 1.03930 0.91471 1.23318 1.01401 0.96764 1.00771 0.93403 0.78136 0.94617 0.95389 0.75662 0.84610 0.84813 0.89095 0.89896 0.90326 0.91344 0.91233 0.90707 0.90040 0.90255 0.87098 0.89236 0.89337 0.89641 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.33 9.99 -15.06 -0.15 -6.48 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.73 -16.65 5.43 -59.90 -0.33 -16.98 16 10 C 0.15 2.64 5.80 -4.04 -0.02 2.62 16 11 C 0.17 2.63 2.59 -67.93 -0.18 2.45 16 12 H 0.09 1.65 7.58 -51.93 -0.39 1.25 16 13 N -0.70 -9.53 3.05 -53.81 -0.16 -9.69 16 14 C 0.50 7.17 6.74 -10.98 -0.07 7.10 16 15 O -0.52 -9.36 13.46 5.56 0.07 -9.29 16 16 C 0.09 1.04 6.72 -5.19 -0.03 1.01 16 17 N -0.27 -3.80 2.82 -58.43 -0.16 -3.97 16 18 N -0.09 -1.49 13.19 60.35 0.80 -0.69 16 19 N -0.26 -4.43 12.40 33.16 0.41 -4.02 16 20 C -0.03 -0.38 7.11 -83.12 -0.59 -0.97 16 21 C 0.00 0.02 6.76 -82.49 -0.56 -0.54 16 22 C -0.05 -0.58 5.97 -27.74 -0.17 -0.74 16 23 C -0.11 -1.01 5.90 -26.45 -0.16 -1.16 16 24 C -0.12 -1.07 5.90 -26.46 -0.16 -1.23 16 25 C -0.03 -0.31 6.30 -27.72 -0.17 -0.48 16 26 C -0.16 -2.17 5.71 -90.62 -0.52 -2.69 16 27 C -0.18 -2.15 9.74 -26.70 -0.26 -2.41 16 28 C -0.19 -2.59 9.82 -26.70 -0.26 -2.85 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.38 9.23 7.33 -40.82 -0.30 8.93 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.41 5.01 8.60 -40.82 -0.35 4.66 16 34 H 0.14 1.23 7.71 -51.93 -0.40 0.83 16 35 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.84 7.87 -51.93 -0.41 0.44 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 40 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.11 1.38 8.11 -51.93 -0.42 0.96 16 45 H 0.09 1.07 6.67 -51.93 -0.35 0.72 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 48 H 0.11 1.90 5.01 -51.93 -0.26 1.64 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -33.09 387.53 -8.72 -41.81 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.50 Total: 12.97 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -3.40 Total: -6.73 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 1.28 Total: -60.78 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.09 -8.72 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569320624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.339 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds