Wall clock time and date at job start Tue Mar 31 2020 17:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00384 * 2 1 4 4 H 1.48504 * 109.47116 * 240.00261 * 3 2 1 5 5 H 1.48501 * 109.47002 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47020 * 120.00053 * 3 2 1 7 7 C 1.38812 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00280 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00285 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47003 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47469 * 295.00011 * 11 10 9 13 13 N 1.46497 * 109.47017 * 55.00665 * 11 10 9 14 14 C 1.34780 * 119.99566 * 205.00005 * 13 11 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 11 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 13 18 18 N 1.29109 * 126.01027 * 269.68733 * 17 16 14 19 19 N 1.29019 * 110.25785 * 179.77655 * 18 17 16 20 20 C 1.32906 * 108.63940 * 0.41820 * 19 18 17 21 21 C 1.34405 * 126.00576 * 90.00356 * 17 16 14 22 22 C 1.50529 * 129.25156 * 0.20168 * 21 17 16 23 23 C 1.53440 * 108.32052 * 163.46542 * 22 21 17 24 24 C 1.53103 * 109.55289 * 49.72324 * 23 22 21 25 25 C 1.50594 * 129.16879 * 179.85984 * 20 19 18 26 26 C 1.53003 * 109.46917 * 175.00593 * 11 10 9 27 27 C 1.53000 * 117.49712 * 248.74819 * 26 11 10 28 28 C 1.52993 * 117.49846 * 180.09022 * 26 11 10 29 29 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99820 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46519 * 60.00423 * 10 9 7 32 32 H 1.09000 * 109.47088 * 300.00587 * 10 9 7 33 33 H 0.96995 * 120.00423 * 24.99311 * 13 11 10 34 34 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 35 35 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 36 36 H 1.08996 * 109.69773 * 283.17296 * 22 21 17 37 37 H 1.08998 * 109.69342 * 43.76179 * 22 21 17 38 38 H 1.09007 * 109.45477 * 169.74234 * 23 22 21 39 39 H 1.08994 * 109.46211 * 289.70983 * 23 22 21 40 40 H 1.09001 * 109.45800 * 49.96711 * 24 23 22 41 41 H 1.08998 * 109.45266 * 169.90256 * 24 23 22 42 42 H 1.09003 * 109.69221 * 43.75963 * 25 20 19 43 43 H 1.08997 * 109.72356 * 283.20073 * 25 20 19 44 44 H 1.08998 * 115.54950 * 34.40898 * 26 11 10 45 45 H 1.09007 * 117.49634 * 359.97438 * 27 26 11 46 46 H 1.09003 * 117.50432 * 145.01742 * 27 26 11 47 47 H 1.09002 * 117.49525 * 214.97600 * 28 26 11 48 48 H 1.08997 * 117.50443 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.0635 -4.8197 -0.0021 12 1 0.4977 -4.8143 0.9295 13 7 0.1438 -4.6753 -1.1331 14 6 -1.0808 -5.2361 -1.0817 15 8 -1.4210 -5.8606 -0.0993 16 6 -2.0268 -5.0880 -2.2454 17 7 -3.2815 -5.7825 -1.9461 18 7 -3.5504 -7.0154 -2.2189 19 7 -4.7401 -7.3126 -1.8175 20 6 -5.2841 -6.2330 -1.2653 21 6 -4.3572 -5.2464 -1.3445 22 6 -4.5649 -3.8445 -0.8371 23 6 -6.0685 -3.6274 -0.6217 24 6 -6.6413 -4.7866 0.1980 25 6 -6.6493 -6.0632 -0.6529 26 6 1.8243 -6.1412 -0.1288 27 6 1.6658 -6.9252 -1.4331 28 6 1.0014 -7.4308 -0.1501 29 1 -0.4849 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0005 31 1 2.6851 -3.7150 0.8879 32 1 2.6839 -3.7143 -0.8921 33 1 0.4159 -4.1761 -1.9189 34 1 -2.2284 -4.0308 -2.4175 35 1 -1.5757 -5.5219 -3.1378 36 1 -4.0358 -3.7133 0.1067 37 1 -4.1919 -3.1295 -1.5704 38 1 -6.2270 -2.6911 -0.0864 39 1 -6.5711 -3.5829 -1.5878 40 1 -6.0255 -4.9444 1.0835 41 1 -7.6601 -4.5471 0.5028 42 1 -6.8790 -6.9229 -0.0232 43 1 -7.3974 -5.9748 -1.4407 44 1 2.7968 -6.1727 0.3623 45 1 1.0192 -6.4998 -2.2006 46 1 2.5339 -7.4730 -1.7998 47 1 1.4327 -8.3109 0.3268 48 1 -0.0819 -7.3380 -0.0734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569320624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:48 Heat of formation + Delta-G solvation = 74.337130 kcal Electronic energy + Delta-G solvation = -29544.364541 eV Core-core repulsion = 25636.571631 eV Total energy + Delta-G solvation = -3907.792910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.45377 -41.40075 -38.62019 -37.95269 -36.57232 -35.82271 -34.92974 -33.12820 -31.59416 -31.11359 -30.35440 -28.88922 -25.94902 -25.10525 -23.68130 -23.56417 -23.38164 -22.93684 -21.64594 -21.02645 -20.53827 -19.36065 -18.73852 -18.33114 -17.45449 -17.17933 -16.92819 -16.46170 -15.95197 -15.82912 -15.35151 -15.18936 -14.99734 -14.83782 -14.81985 -14.74363 -14.59977 -14.34383 -13.79745 -13.43308 -13.13360 -13.07337 -12.88433 -12.74985 -12.69087 -12.57431 -12.36015 -12.24660 -12.12393 -11.97094 -11.84010 -11.83160 -11.53723 -11.34902 -11.25664 -10.96852 -10.88149 -10.74541 -10.11064 -9.82746 -8.99351 -7.92981 -5.21498 0.45053 1.16700 1.34537 1.50150 1.51396 1.52713 1.58363 2.08819 2.57183 2.89564 3.16570 3.40758 3.44286 3.49672 3.60996 3.70960 3.86923 3.89885 3.93190 4.00099 4.05232 4.08346 4.16202 4.35728 4.42406 4.45988 4.54582 4.56670 4.58950 4.60276 4.78151 4.86890 4.90724 4.99690 5.00834 5.08224 5.10770 5.18642 5.20815 5.21543 5.30745 5.34437 5.43724 5.44397 5.53561 5.54677 6.28310 6.37538 7.03701 7.36849 7.44231 8.07724 8.33127 9.29543 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.003775 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.284942 B = 7415.668105 C = 9685.511584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.152 3.848 11 C 0.183 3.817 12 H 0.061 0.939 13 N -0.692 5.692 14 C 0.505 3.495 15 O -0.561 6.561 16 C 0.090 3.910 17 N -0.265 5.265 18 N -0.119 5.119 19 N -0.295 5.295 20 C -0.037 4.037 21 C -0.006 4.006 22 C -0.051 4.051 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.030 4.030 26 C -0.163 4.163 27 C -0.157 4.157 28 C -0.196 4.196 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.417 0.583 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 -9.053 -5.563 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.384 5.384 10 C 0.025 3.975 11 C 0.078 3.922 12 H 0.079 0.921 13 N -0.344 5.344 14 C 0.290 3.710 15 O -0.440 6.440 16 C -0.035 4.035 17 N -0.056 5.056 18 N -0.096 5.096 19 N -0.159 5.159 20 C -0.177 4.177 21 C -0.140 4.140 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.155 4.155 25 C -0.069 4.069 26 C -0.182 4.182 27 C -0.194 4.194 28 C -0.233 4.233 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.254 0.746 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.143 0.857 45 H 0.111 0.889 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.253 -10.731 -5.517 14.078 hybrid contribution 0.303 1.944 0.395 2.007 sum -6.950 -8.787 -5.122 12.318 Atomic orbital electron populations 1.69772 1.06324 1.26045 1.59158 1.25415 0.96274 1.00574 1.03524 0.85323 0.77280 0.79735 0.78027 1.20280 1.22392 1.21067 1.19540 0.91519 0.85120 1.41583 0.90614 1.42449 1.05654 1.00679 1.89609 1.21008 0.93231 0.83670 0.99594 1.20480 0.89473 0.93396 0.88879 0.92132 1.45738 1.13625 1.53914 1.21085 1.20660 0.82945 0.78968 0.88447 1.90724 1.76392 1.42173 1.34698 1.22182 0.80574 1.01623 0.99072 1.46430 1.12257 1.08687 1.38228 1.78455 1.11700 0.96492 1.22926 1.74689 1.01441 1.25649 1.14112 1.22270 1.00716 0.89241 1.05490 1.22318 0.88050 1.00590 1.03026 1.20377 1.00200 0.87274 1.01147 1.21597 0.91667 0.99572 1.01864 1.21655 1.03056 0.93144 0.97615 1.20103 0.88240 0.99535 0.99039 1.22632 1.00983 0.90922 1.03711 1.22979 1.03153 1.02584 0.90664 1.23217 0.99906 0.97423 1.02788 0.94021 0.79149 0.94693 0.93767 0.74601 0.82052 0.81758 0.90917 0.88679 0.88889 0.90108 0.92821 0.87865 0.89953 0.88408 0.85693 0.88875 0.87165 0.88514 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.11 13.06 21.65 0.28 -53.82 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.97 43.11 29.55 68.60 2.03 45.14 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.25 -12.53 9.99 84.03 0.84 -11.69 16 8 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.74 -33.35 5.43 -343.44 -1.87 -35.22 16 10 C 0.15 5.26 5.80 86.38 0.50 5.76 16 11 C 0.18 5.57 2.59 44.99 0.12 5.68 16 12 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 13 N -0.69 -18.41 3.05 -442.54 -1.35 -19.76 16 14 C 0.50 14.38 6.74 87.66 0.59 14.97 16 15 O -0.56 -20.91 13.46 -3.03 -0.04 -20.95 16 16 C 0.09 1.96 6.72 85.63 0.58 2.54 16 17 N -0.26 -7.57 2.82 -338.77 -0.95 -8.53 16 18 N -0.12 -4.03 13.19 37.02 0.49 -3.54 16 19 N -0.29 -10.15 12.40 -48.99 -0.61 -10.76 16 20 C -0.04 -1.06 7.11 41.75 0.30 -0.76 16 21 C -0.01 -0.15 6.76 41.50 0.28 0.13 16 22 C -0.05 -1.12 5.97 29.94 0.18 -0.94 16 23 C -0.11 -1.76 5.90 30.78 0.18 -1.58 16 24 C -0.12 -1.90 5.90 30.77 0.18 -1.72 16 25 C -0.03 -0.60 6.30 29.96 0.19 -0.41 16 26 C -0.16 -4.18 5.71 -10.79 -0.06 -4.24 16 27 C -0.16 -3.52 9.74 30.62 0.30 -3.22 16 28 C -0.20 -5.36 9.82 30.61 0.30 -5.06 16 29 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.38 18.13 7.33 -92.71 -0.68 17.45 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.42 9.64 8.60 -92.71 -0.80 8.84 16 34 H 0.16 2.67 7.71 -2.39 -0.02 2.65 16 35 H 0.16 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 1.82 7.87 -2.39 -0.02 1.80 16 38 H 0.09 1.26 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 40 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.13 2.86 8.11 -2.39 -0.02 2.84 16 45 H 0.09 2.02 6.67 -2.38 -0.02 2.00 16 46 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.09 2.93 5.01 -2.39 -0.01 2.91 16 Total: -1.00 -72.56 387.53 2.43 -70.14 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.49 Total: 40.81 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 4.94 Total: -3.50 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -4.01 Total: -131.63 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.04 Total: -20.95 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -72.56 2.43 -70.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569320624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.474 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds