Wall clock time and date at job start Tue Mar 31 2020 17:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00279 * 2 1 4 4 H 1.48501 * 109.46926 * 240.00009 * 3 2 1 5 5 H 1.48500 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47042 * 120.00233 * 3 2 1 7 7 C 1.38816 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00469 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99693 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00085 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47606 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46665 * 64.99732 * 11 10 9 13 13 N 1.46501 * 109.46956 * 305.00617 * 11 10 9 14 14 C 1.34773 * 120.00070 * 154.99866 * 13 11 10 15 15 O 1.21292 * 120.00117 * 359.97438 * 14 13 11 16 16 C 1.50703 * 120.00241 * 179.97438 * 14 13 11 17 17 N 1.46500 * 109.47192 * 179.97438 * 16 14 13 18 18 N 1.29106 * 126.01053 * 269.69469 * 17 16 14 19 19 N 1.29019 * 110.26050 * 180.21908 * 18 17 16 20 20 C 1.32916 * 108.63671 * 359.96643 * 19 18 17 21 21 C 1.34404 * 126.00322 * 90.00348 * 17 16 14 22 22 C 1.50529 * 129.25367 * 359.94197 * 21 17 16 23 23 C 1.53439 * 108.32602 * 163.46322 * 22 21 17 24 24 C 1.53105 * 109.55070 * 49.71507 * 23 22 21 25 25 C 1.50590 * 129.16456 * 180.12617 * 20 19 18 26 26 C 1.52989 * 109.47513 * 185.00000 * 11 10 9 27 27 C 1.53005 * 117.50068 * 248.74812 * 26 11 10 28 28 C 1.52997 * 117.50275 * 180.08800 * 26 11 10 29 29 H 0.96999 * 119.99542 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00199 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47113 * 59.99869 * 10 9 7 32 32 H 1.09005 * 109.46994 * 300.00233 * 10 9 7 33 33 H 0.97001 * 119.99656 * 334.99033 * 13 11 10 34 34 H 1.09003 * 109.46717 * 59.99620 * 16 14 13 35 35 H 1.08998 * 109.47159 * 300.00013 * 16 14 13 36 36 H 1.08997 * 109.70018 * 283.17225 * 22 21 17 37 37 H 1.09003 * 109.69806 * 43.75519 * 22 21 17 38 38 H 1.08995 * 109.46017 * 169.74481 * 23 22 21 39 39 H 1.09001 * 109.45405 * 289.71484 * 23 22 21 40 40 H 1.09002 * 109.45346 * 49.97457 * 24 23 22 41 41 H 1.09005 * 109.45403 * 169.92632 * 24 23 22 42 42 H 1.08995 * 109.69262 * 43.76478 * 25 20 19 43 43 H 1.08997 * 109.72313 * 283.19930 * 25 20 19 44 44 H 1.09003 * 115.55254 * 34.41574 * 26 11 10 45 45 H 1.08996 * 117.50041 * 0.02562 * 27 26 11 46 46 H 1.09008 * 117.49721 * 145.01640 * 27 26 11 47 47 H 1.08997 * 117.50536 * 214.98199 * 28 26 11 48 48 H 1.09002 * 117.49967 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0027 11 6 1.0637 -4.8198 -0.0031 12 1 0.4971 -4.8130 -0.9343 13 7 0.1446 -4.6768 1.1287 14 6 -1.0799 -5.2375 1.0774 15 8 -1.4211 -5.8602 0.0940 16 6 -2.0252 -5.0909 2.2419 17 7 -3.2806 -5.7841 1.9421 18 7 -4.3159 -5.2661 1.3707 19 7 -5.2525 -6.1465 1.2602 20 6 -4.8215 -7.2924 1.7776 21 6 -3.5589 -7.0695 2.2189 22 6 -2.6965 -8.1091 2.8832 23 6 -3.5971 -9.2668 3.3339 24 6 -4.4913 -9.7032 2.1702 25 6 -5.5343 -8.6144 1.8868 26 6 1.8244 -6.1412 0.1214 27 6 1.8335 -7.0687 -1.0955 28 6 1.0019 -7.4312 0.1374 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0016 31 1 2.6846 -3.7154 0.8872 32 1 2.6846 -3.7138 -0.8928 33 1 0.4174 -4.1786 1.9150 34 1 -2.2267 -4.0338 2.4154 35 1 -1.5736 -5.5258 3.1335 36 1 -1.9528 -8.4762 2.1760 37 1 -2.1973 -7.6738 3.7489 38 1 -2.9782 -10.1061 3.6509 39 1 -4.2195 -8.9396 4.1667 40 1 -3.8798 -9.8602 1.2816 41 1 -4.9983 -10.6323 2.4306 42 1 -6.0483 -8.8329 0.9508 43 1 -6.2566 -8.5767 2.7022 44 1 2.7235 -6.1100 0.7370 45 1 1.2978 -6.7371 -1.9850 46 1 2.7384 -7.6477 -1.2803 47 1 1.3598 -8.2487 0.7632 48 1 -0.0814 -7.3384 0.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569320625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:52 Heat of formation + Delta-G solvation = 92.532453 kcal Electronic energy + Delta-G solvation = -29324.775286 eV Core-core repulsion = 25417.771384 eV Total energy + Delta-G solvation = -3907.003902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.38235 -40.02616 -37.49203 -37.19295 -35.14690 -34.74310 -33.58598 -31.35874 -30.73697 -30.19638 -29.01931 -27.51673 -24.30861 -24.12262 -22.80126 -22.45361 -22.06616 -21.58553 -20.53442 -20.20256 -19.73235 -17.84269 -17.43002 -17.09731 -16.21289 -15.82945 -15.68930 -15.10751 -15.01710 -14.54865 -14.24878 -14.20566 -14.09075 -13.94367 -13.68359 -13.54776 -13.22224 -13.00233 -12.56800 -12.35773 -12.22685 -11.82190 -11.55340 -11.39071 -11.31570 -11.25094 -11.21486 -11.14195 -10.97622 -10.85464 -10.50621 -10.44283 -10.28209 -10.21096 -10.04042 -9.77679 -9.59755 -8.99001 -8.86758 -8.80986 -7.04837 -5.84359 -3.15410 1.54385 2.15852 2.49710 2.60880 3.17539 3.38682 3.43709 3.45092 3.95299 4.03666 4.30968 4.46494 4.49077 4.54025 4.60926 4.68955 4.76797 4.78573 4.81694 5.04157 5.12820 5.14432 5.22600 5.25765 5.32179 5.36159 5.47760 5.53867 5.62740 5.64685 5.70329 5.74016 5.77789 5.87890 5.95590 5.96745 6.01304 6.10960 6.24513 6.25024 6.31421 6.37536 6.52523 6.54274 6.75354 7.53768 7.61288 8.18649 8.32844 8.59521 9.44696 9.98561 10.33745 11.37536 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003073 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.247794 B = 9110.672111 C =10540.103852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.149 3.851 11 C 0.170 3.830 12 H 0.089 0.911 13 N -0.698 5.698 14 C 0.506 3.494 15 O -0.524 6.524 16 C 0.092 3.908 17 N -0.263 5.263 18 N -0.077 5.077 19 N -0.263 5.263 20 C -0.025 4.025 21 C -0.011 4.011 22 C -0.046 4.046 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.031 4.031 26 C -0.163 4.163 27 C -0.169 4.169 28 C -0.186 4.186 29 H 0.257 0.743 30 H 0.386 0.614 31 H 0.026 0.974 32 H 0.037 0.963 33 H 0.407 0.593 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 -21.674 9.690 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.021 3.979 11 C 0.066 3.934 12 H 0.107 0.893 13 N -0.348 5.348 14 C 0.289 3.711 15 O -0.401 6.401 16 C -0.034 4.034 17 N -0.054 5.054 18 N -0.055 5.055 19 N -0.128 5.128 20 C -0.164 4.164 21 C -0.144 4.144 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.070 4.070 26 C -0.183 4.183 27 C -0.207 4.207 28 C -0.223 4.223 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.242 0.758 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.102 0.898 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.721 -20.633 8.332 22.561 hybrid contribution 1.077 0.617 0.750 1.450 sum -2.644 -20.016 9.082 22.138 Atomic orbital electron populations 1.69650 1.05100 1.26002 1.56957 1.24765 0.95514 0.97758 1.02578 0.86262 0.78525 0.83458 0.77854 1.21215 1.21644 1.21236 1.19141 0.90990 0.83971 1.43711 0.91153 1.42339 1.05948 0.99701 1.89714 1.20916 0.92911 0.84966 0.99137 1.20866 0.90020 0.93043 0.89510 0.89298 1.45826 1.13835 1.53976 1.21212 1.20206 0.82650 0.79945 0.88299 1.90719 1.75559 1.41040 1.32747 1.21908 0.80959 1.01863 0.98680 1.46276 1.12348 1.08194 1.38588 1.78690 0.90813 1.21457 1.14511 1.74811 1.21230 0.99113 1.17635 1.21578 0.93644 0.96776 1.04416 1.21708 0.98407 0.86915 1.07388 1.20191 0.96553 0.92442 0.99342 1.21565 0.98015 0.97041 0.98472 1.21642 0.97420 0.97870 0.98898 1.19911 0.96763 0.87399 1.02893 1.22648 1.01479 0.91229 1.02898 1.22899 1.02035 1.02992 0.92764 1.23242 1.00443 0.97478 1.01103 0.93291 0.78037 0.95623 0.94562 0.75772 0.84085 0.85228 0.89566 0.90360 0.90604 0.91237 0.91290 0.90716 0.89941 0.90209 0.87685 0.88737 0.89056 0.89787 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.34 5.43 -59.91 -0.33 -17.66 16 10 C 0.15 2.72 5.80 -4.04 -0.02 2.70 16 11 C 0.17 2.64 2.43 -67.94 -0.17 2.47 16 12 H 0.09 1.64 7.34 -51.93 -0.38 1.26 16 13 N -0.70 -9.66 4.50 -53.81 -0.24 -9.90 16 14 C 0.51 7.29 7.23 -10.99 -0.08 7.21 16 15 O -0.52 -9.47 13.46 5.55 0.07 -9.40 16 16 C 0.09 1.05 6.72 -5.19 -0.03 1.01 16 17 N -0.26 -3.78 2.82 -58.43 -0.16 -3.94 16 18 N -0.08 -1.38 13.19 60.35 0.80 -0.58 16 19 N -0.26 -4.58 12.40 33.16 0.41 -4.17 16 20 C -0.02 -0.34 7.11 -83.12 -0.59 -0.93 16 21 C -0.01 -0.13 6.76 -82.50 -0.56 -0.69 16 22 C -0.05 -0.38 5.98 -27.74 -0.17 -0.55 16 23 C -0.11 -0.72 5.90 -26.45 -0.16 -0.87 16 24 C -0.12 -0.85 5.90 -26.46 -0.16 -1.01 16 25 C -0.03 -0.29 6.30 -27.72 -0.17 -0.46 16 26 C -0.16 -2.08 5.36 -90.62 -0.49 -2.57 16 27 C -0.17 -2.09 10.18 -26.69 -0.27 -2.36 16 28 C -0.19 -2.28 9.74 -26.70 -0.26 -2.54 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.39 9.80 7.33 -40.82 -0.30 9.50 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.41 5.05 8.60 -40.82 -0.35 4.70 16 34 H 0.14 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.13 0.90 7.71 -51.93 -0.40 0.50 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 40 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 45 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 46 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.11 1.67 5.02 -51.93 -0.26 1.41 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -35.10 390.45 -8.79 -43.89 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.56 Total: 11.48 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.37 Total: -5.70 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 1.20 Total: -62.99 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.10 -8.79 -43.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569320625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.423 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds