Wall clock time and date at job start Tue Mar 31 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00279 * 2 1 4 4 H 1.48501 * 109.46926 * 240.00009 * 3 2 1 5 5 H 1.48500 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47042 * 120.00233 * 3 2 1 7 7 C 1.38816 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00469 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99693 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00085 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47606 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46665 * 64.99732 * 11 10 9 13 13 N 1.46501 * 109.46956 * 305.00617 * 11 10 9 14 14 C 1.34773 * 120.00070 * 154.99866 * 13 11 10 15 15 O 1.21292 * 120.00117 * 359.97438 * 14 13 11 16 16 C 1.50703 * 120.00241 * 179.97438 * 14 13 11 17 17 N 1.46500 * 109.47192 * 179.97438 * 16 14 13 18 18 N 1.29106 * 126.01053 * 269.69469 * 17 16 14 19 19 N 1.29019 * 110.26050 * 180.21908 * 18 17 16 20 20 C 1.32916 * 108.63671 * 359.96643 * 19 18 17 21 21 C 1.34404 * 126.00322 * 90.00348 * 17 16 14 22 22 C 1.50529 * 129.25367 * 359.94197 * 21 17 16 23 23 C 1.53439 * 108.32602 * 163.46322 * 22 21 17 24 24 C 1.53105 * 109.55070 * 49.71507 * 23 22 21 25 25 C 1.50590 * 129.16456 * 180.12617 * 20 19 18 26 26 C 1.52989 * 109.47513 * 185.00000 * 11 10 9 27 27 C 1.53005 * 117.50068 * 248.74812 * 26 11 10 28 28 C 1.52997 * 117.50275 * 180.08800 * 26 11 10 29 29 H 0.96999 * 119.99542 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00199 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47113 * 59.99869 * 10 9 7 32 32 H 1.09005 * 109.46994 * 300.00233 * 10 9 7 33 33 H 0.97001 * 119.99656 * 334.99033 * 13 11 10 34 34 H 1.09003 * 109.46717 * 59.99620 * 16 14 13 35 35 H 1.08998 * 109.47159 * 300.00013 * 16 14 13 36 36 H 1.08997 * 109.70018 * 283.17225 * 22 21 17 37 37 H 1.09003 * 109.69806 * 43.75519 * 22 21 17 38 38 H 1.08995 * 109.46017 * 169.74481 * 23 22 21 39 39 H 1.09001 * 109.45405 * 289.71484 * 23 22 21 40 40 H 1.09002 * 109.45346 * 49.97457 * 24 23 22 41 41 H 1.09005 * 109.45403 * 169.92632 * 24 23 22 42 42 H 1.08995 * 109.69262 * 43.76478 * 25 20 19 43 43 H 1.08997 * 109.72313 * 283.19930 * 25 20 19 44 44 H 1.09003 * 115.55254 * 34.41574 * 26 11 10 45 45 H 1.08996 * 117.50041 * 0.02562 * 27 26 11 46 46 H 1.09008 * 117.49721 * 145.01640 * 27 26 11 47 47 H 1.08997 * 117.50536 * 214.98199 * 28 26 11 48 48 H 1.09002 * 117.49967 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0027 11 6 1.0637 -4.8198 -0.0031 12 1 0.4971 -4.8130 -0.9343 13 7 0.1446 -4.6768 1.1287 14 6 -1.0799 -5.2375 1.0774 15 8 -1.4211 -5.8602 0.0940 16 6 -2.0252 -5.0909 2.2419 17 7 -3.2806 -5.7841 1.9421 18 7 -4.3159 -5.2661 1.3707 19 7 -5.2525 -6.1465 1.2602 20 6 -4.8215 -7.2924 1.7776 21 6 -3.5589 -7.0695 2.2189 22 6 -2.6965 -8.1091 2.8832 23 6 -3.5971 -9.2668 3.3339 24 6 -4.4913 -9.7032 2.1702 25 6 -5.5343 -8.6144 1.8868 26 6 1.8244 -6.1412 0.1214 27 6 1.8335 -7.0687 -1.0955 28 6 1.0019 -7.4312 0.1374 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0016 31 1 2.6846 -3.7154 0.8872 32 1 2.6846 -3.7138 -0.8928 33 1 0.4174 -4.1786 1.9150 34 1 -2.2267 -4.0338 2.4154 35 1 -1.5736 -5.5258 3.1335 36 1 -1.9528 -8.4762 2.1760 37 1 -2.1973 -7.6738 3.7489 38 1 -2.9782 -10.1061 3.6509 39 1 -4.2195 -8.9396 4.1667 40 1 -3.8798 -9.8602 1.2816 41 1 -4.9983 -10.6323 2.4306 42 1 -6.0483 -8.8329 0.9508 43 1 -6.2566 -8.5767 2.7022 44 1 2.7235 -6.1100 0.7370 45 1 1.2978 -6.7371 -1.9850 46 1 2.7384 -7.6477 -1.2803 47 1 1.3598 -8.2487 0.7632 48 1 -0.0814 -7.3384 0.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569320625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:51 Heat of formation + Delta-G solvation = 68.086947 kcal Electronic energy + Delta-G solvation = -29325.835322 eV Core-core repulsion = 25417.771384 eV Total energy + Delta-G solvation = -3908.063938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.43519 -41.21795 -38.61970 -37.91917 -36.64943 -35.81176 -35.10074 -33.10583 -31.56555 -31.09000 -30.31188 -28.82249 -25.94017 -25.07948 -23.68353 -23.56552 -23.11452 -22.98451 -21.59736 -21.37404 -20.50595 -19.36561 -18.69807 -18.38593 -17.31190 -16.94240 -16.83296 -16.62662 -15.97236 -15.86096 -15.46153 -15.14773 -14.97585 -14.85417 -14.77824 -14.66655 -14.58699 -14.35150 -13.81939 -13.47092 -13.20761 -13.03100 -12.78579 -12.75192 -12.52959 -12.51846 -12.33290 -12.20088 -12.14134 -11.92285 -11.86873 -11.79819 -11.50113 -11.31468 -11.22642 -11.10521 -10.98267 -10.71105 -10.08259 -9.81358 -9.03726 -7.95813 -5.25837 0.49266 1.20143 1.37123 1.47684 1.50058 1.52783 1.56300 2.07967 2.54622 2.95039 3.20096 3.38424 3.48999 3.53069 3.59250 3.73234 3.90461 3.92011 3.93810 4.04659 4.10146 4.12905 4.14368 4.30603 4.43062 4.45756 4.58873 4.60412 4.60712 4.63940 4.80257 4.87604 4.94331 5.02727 5.04035 5.08528 5.11164 5.22350 5.24442 5.26542 5.31425 5.36214 5.46835 5.48140 5.50642 5.59204 6.24058 6.40943 7.06782 7.31992 7.48073 8.04751 8.27814 9.26599 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003073 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.247794 B = 9110.672111 C =10540.103852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.181 3.819 12 H 0.051 0.949 13 N -0.690 5.690 14 C 0.506 3.494 15 O -0.565 6.565 16 C 0.091 3.909 17 N -0.264 5.264 18 N -0.136 5.136 19 N -0.302 5.302 20 C -0.043 4.043 21 C -0.001 4.001 22 C -0.047 4.047 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.032 4.032 26 C -0.160 4.160 27 C -0.172 4.172 28 C -0.175 4.175 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.416 0.584 34 H 0.144 0.856 35 H 0.183 0.817 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -24.023 12.121 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.198 1.198 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.387 5.387 10 C 0.024 3.976 11 C 0.076 3.924 12 H 0.069 0.931 13 N -0.341 5.341 14 C 0.291 3.709 15 O -0.444 6.444 16 C -0.034 4.034 17 N -0.056 5.056 18 N -0.112 5.112 19 N -0.166 5.166 20 C -0.184 4.184 21 C -0.136 4.136 22 C -0.086 4.086 23 C -0.147 4.147 24 C -0.154 4.154 25 C -0.072 4.072 26 C -0.179 4.179 27 C -0.210 4.210 28 C -0.212 4.212 29 H 0.058 0.942 30 H 0.205 0.795 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.253 0.747 34 H 0.161 0.839 35 H 0.200 0.800 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.146 0.854 45 H 0.091 0.909 46 H 0.135 0.865 47 H 0.130 0.870 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.321 -22.984 10.774 25.419 hybrid contribution 0.383 1.248 -0.054 1.307 sum -0.938 -21.736 10.720 24.254 Atomic orbital electron populations 1.69820 1.06661 1.26064 1.59302 1.25549 0.96248 1.01083 1.03644 0.85240 0.77138 0.79261 0.78258 1.20783 1.22734 1.19811 1.19577 0.91600 0.85017 1.41351 0.90168 1.42523 1.05594 1.00962 1.89606 1.21056 0.93278 0.83607 0.99688 1.20561 0.89425 0.93788 0.88659 0.93119 1.45720 1.13670 1.53833 1.20926 1.20648 0.82739 0.79002 0.88535 1.90714 1.76257 1.42909 1.34523 1.22188 0.79553 1.02619 0.98992 1.46493 1.12232 1.09047 1.37778 1.78598 0.92390 1.22820 1.17425 1.74721 1.22257 1.00682 1.18927 1.22395 0.94805 0.97246 1.03943 1.22524 0.98500 0.86750 1.05805 1.20481 0.96362 0.91847 0.99923 1.21612 0.97968 0.97077 0.98020 1.21660 0.96910 0.97897 0.98963 1.20122 0.97648 0.86188 1.03192 1.22549 1.01964 0.89651 1.03770 1.22972 1.02907 1.03110 0.92009 1.23185 0.99008 0.97729 1.01254 0.94173 0.79479 0.93318 0.94843 0.74693 0.83864 0.79956 0.89482 0.87557 0.87805 0.90623 0.92436 0.88049 0.90572 0.88821 0.85355 0.90891 0.86520 0.86979 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.97 45.06 29.55 68.60 2.03 47.08 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.24 -12.91 9.99 84.03 0.84 -12.07 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -35.30 5.43 -343.45 -1.87 -37.16 16 10 C 0.15 5.35 5.80 86.38 0.50 5.85 16 11 C 0.18 5.55 2.43 44.99 0.11 5.66 16 12 H 0.05 1.96 7.34 -2.39 -0.02 1.94 16 13 N -0.69 -18.68 4.50 -442.54 -1.99 -20.67 16 14 C 0.51 14.57 7.23 87.66 0.63 15.21 16 15 O -0.56 -21.12 13.46 -3.07 -0.04 -21.16 16 16 C 0.09 2.00 6.72 85.63 0.58 2.58 16 17 N -0.26 -7.65 2.82 -338.77 -0.95 -8.61 16 18 N -0.14 -5.13 13.19 37.02 0.49 -4.64 16 19 N -0.30 -11.12 12.40 -48.99 -0.61 -11.73 16 20 C -0.04 -1.20 7.11 41.75 0.30 -0.90 16 21 C 0.00 -0.03 6.76 41.50 0.28 0.26 16 22 C -0.05 -0.63 5.98 29.94 0.18 -0.45 16 23 C -0.11 -0.98 5.90 30.78 0.18 -0.80 16 24 C -0.12 -1.36 5.90 30.77 0.18 -1.18 16 25 C -0.03 -0.59 6.30 29.96 0.19 -0.40 16 26 C -0.16 -3.75 5.36 -10.80 -0.06 -3.81 16 27 C -0.17 -3.99 10.18 30.62 0.31 -3.68 16 28 C -0.17 -3.93 9.74 30.62 0.30 -3.63 16 29 H 0.25 14.85 8.31 -92.71 -0.77 14.07 16 30 H 0.37 19.43 7.33 -92.71 -0.68 18.75 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 33 H 0.42 9.73 8.60 -92.71 -0.80 8.93 16 34 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.18 1.93 7.71 -2.39 -0.02 1.91 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.11 0.86 7.87 -2.39 -0.02 0.84 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 40 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 41 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.13 2.48 8.11 -2.39 -0.02 2.46 16 45 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 46 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.09 2.56 5.02 -2.39 -0.01 2.54 16 Total: -1.00 -80.96 390.45 1.84 -79.12 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.49 Total: 36.96 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 4.99 Total: -0.98 kcal Atomic # 7 Polarization: -136.37 SS G_CDS: -4.65 Total: -141.02 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.04 Total: -21.16 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -80.96 1.84 -79.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569320625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.206 kcal (2) G-P(sol) polarization free energy of solvation -80.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds