Wall clock time and date at job start Tue Mar 31 2020 18:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.08996 * 110.89107 * 51.11607 * 12 11 10 14 14 C 1.55155 * 111.00311 * 287.19336 * 12 11 10 15 15 C 1.54329 * 102.94536 * 206.42169 * 14 12 11 16 16 N 1.47026 * 107.26752 * 22.19650 * 15 14 12 17 17 C 1.34774 * 125.64444 * 181.09249 * 16 15 14 18 18 O 1.21284 * 119.99380 * 179.97438 * 17 16 15 19 19 C 1.50695 * 120.00216 * 359.95665 * 17 16 15 20 20 N 1.46500 * 109.47025 * 179.97438 * 19 17 16 21 21 C 1.35317 * 125.86579 * 124.71349 * 20 19 17 22 22 C 1.35348 * 106.17806 * 179.90480 * 21 20 19 23 23 C 1.50700 * 126.75473 * 180.12536 * 22 21 20 24 24 C 1.53002 * 117.49507 * 343.92155 * 23 22 21 25 25 C 1.53003 * 60.00079 * 252.50868 * 24 23 22 26 26 N 1.33770 * 106.49169 * 0.35892 * 22 21 20 27 27 N 1.28633 * 108.89072 * 359.76739 * 26 22 21 28 28 C 1.47425 * 108.70161 * 1.05559 * 16 15 14 29 29 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 30 30 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47424 * 299.99703 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.00128 * 10 9 7 33 33 H 1.09000 * 109.46887 * 300.00491 * 11 10 9 34 34 H 1.08998 * 109.46846 * 59.99668 * 11 10 9 35 35 H 1.08996 * 110.72409 * 324.78775 * 14 12 11 36 36 H 1.09001 * 110.71958 * 88.06200 * 14 12 11 37 37 H 1.08993 * 109.88263 * 262.77493 * 15 14 12 38 38 H 1.09003 * 109.87780 * 141.60692 * 15 14 12 39 39 H 1.08993 * 109.47383 * 300.00096 * 19 17 16 40 40 H 1.09004 * 109.46886 * 60.00169 * 19 17 16 41 41 H 1.08005 * 126.90664 * 0.02562 * 21 20 19 42 42 H 1.08994 * 115.54654 * 129.62982 * 23 22 21 43 43 H 1.08995 * 117.50139 * 359.97438 * 24 23 22 44 44 H 1.09005 * 117.49167 * 145.02161 * 24 23 22 45 45 H 1.08995 * 117.49939 * 252.51001 * 25 24 23 46 46 H 1.09002 * 117.49067 * 107.48921 * 25 24 23 47 47 H 1.08997 * 110.36630 * 217.03059 * 28 16 15 48 48 H 1.09003 * 110.36518 * 94.71581 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.0637 -4.8197 -0.0228 12 6 1.8286 -6.1447 -0.0281 13 1 2.5760 -6.1652 0.7650 14 6 2.4785 -6.4061 -1.4126 15 6 2.5744 -7.9455 -1.4643 16 7 1.5802 -8.4767 -0.5204 17 6 1.3648 -9.7810 -0.2579 18 8 0.5145 -10.1058 0.5436 19 6 2.1802 -10.8357 -0.9605 20 7 1.7584 -12.1627 -0.5052 21 6 1.3404 -13.1769 -1.2975 22 6 1.0545 -14.2089 -0.4698 23 6 0.5521 -15.5725 -0.8688 24 6 -0.0186 -15.7300 -2.2796 25 6 -0.9555 -15.7389 -1.0700 26 7 1.3007 -13.7786 0.7727 27 7 1.7164 -12.5625 0.7175 28 6 0.8585 -7.3464 0.0919 29 1 -0.4850 0.8401 0.0041 30 1 0.3555 -2.3880 -0.0113 31 1 2.6846 -3.7106 -0.9072 32 1 2.6847 -3.7186 0.8727 33 1 0.4367 -4.7660 0.8672 34 1 0.4374 -4.7577 -0.9127 35 1 1.8417 -6.0323 -2.2143 36 1 3.4699 -5.9560 -1.4644 37 1 3.5738 -8.2647 -1.1688 38 1 2.3536 -8.2970 -2.4722 39 1 2.0284 -10.7552 -2.0368 40 1 3.2360 -10.6917 -0.7307 41 1 1.2543 -13.1658 -2.3741 42 1 1.1002 -16.4165 -0.4501 43 1 -0.0311 -14.8474 -2.9190 44 1 0.1541 -16.6780 -2.7894 45 1 -1.3992 -16.6926 -0.7841 46 1 -1.5839 -14.8621 -0.9138 47 1 0.6429 -7.5567 1.1394 48 1 -0.0638 -7.1453 -0.4531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569983610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:53 Heat of formation + Delta-G solvation = 106.581093 kcal Electronic energy + Delta-G solvation = -27253.371387 eV Core-core repulsion = 23346.976680 eV Total energy + Delta-G solvation = -3906.394707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.60108 -40.44958 -38.19583 -37.64476 -35.25965 -34.79147 -33.15330 -31.11930 -31.04607 -29.81118 -29.32156 -27.18746 -24.47398 -24.24109 -23.28890 -23.02510 -22.18764 -21.50663 -20.94713 -20.31579 -19.61684 -18.06326 -17.77136 -17.18120 -16.67583 -16.25182 -15.85507 -15.69672 -15.07687 -14.92081 -14.79373 -14.68258 -14.32670 -13.80919 -13.58500 -13.38423 -13.17107 -12.99022 -12.78861 -12.68568 -12.33638 -12.00516 -11.85496 -11.74950 -11.52666 -11.43535 -11.16644 -11.13837 -10.84957 -10.75928 -10.70056 -10.69067 -10.56798 -10.40939 -10.12013 -10.03824 -9.71659 -9.35254 -9.03638 -8.89417 -6.95299 -5.79051 -3.08118 1.20533 1.75040 2.07180 2.21636 2.57930 3.33820 3.41900 3.46250 3.47528 3.68460 3.87128 4.05395 4.28832 4.31568 4.36555 4.42511 4.44999 4.50396 4.56504 4.68331 4.78698 4.91778 4.93608 5.06470 5.17982 5.23001 5.37238 5.42052 5.48561 5.51753 5.56866 5.64225 5.64686 5.70933 5.72088 5.74392 5.81046 5.90791 6.00678 6.13399 6.17196 6.29888 6.31202 6.77836 6.82500 7.02906 7.63364 7.66281 8.25802 8.39906 9.50769 10.09005 10.43049 11.43750 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.041380 B = 0.001546 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.498556 B =18105.543739 C =18211.913291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.127 4.127 15 C 0.092 3.908 16 N -0.614 5.614 17 C 0.515 3.485 18 O -0.510 6.510 19 C 0.102 3.898 20 N -0.282 5.282 21 C -0.049 4.049 22 C 0.010 3.990 23 C -0.072 4.072 24 C -0.170 4.170 25 C -0.165 4.165 26 N -0.263 5.263 27 N -0.050 5.050 28 C 0.111 3.889 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.189 0.811 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.652 -30.604 -9.452 32.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.105 0.895 14 C -0.164 4.164 15 C -0.030 4.030 16 N -0.349 5.349 17 C 0.300 3.700 18 O -0.384 6.384 19 C -0.024 4.024 20 N -0.076 5.076 21 C -0.199 4.199 22 C -0.127 4.127 23 C -0.092 4.092 24 C -0.208 4.208 25 C -0.202 4.202 26 N -0.130 5.130 27 N -0.030 5.030 28 C -0.011 4.011 29 H 0.066 0.934 30 H 0.217 0.783 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.206 0.794 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.099 0.901 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.568 -30.323 -7.527 31.575 hybrid contribution 0.103 0.966 -1.279 1.606 sum 4.671 -29.356 -8.806 31.002 Atomic orbital electron populations 1.69654 1.05129 1.25802 1.57620 1.24752 0.95534 0.97734 1.02957 0.86258 0.78522 0.83497 0.77844 1.21650 1.21253 1.21263 1.19183 0.90993 0.84218 1.42921 0.91254 1.42359 1.05896 1.00064 1.89550 1.20615 0.93435 0.85461 0.97736 1.21675 0.98700 0.92420 1.02626 1.22352 0.97476 0.94018 0.97497 0.89468 1.22749 1.02986 0.92404 0.98299 1.22257 0.91954 0.96163 0.92664 1.48442 1.38429 1.04671 1.43337 1.19782 0.84560 0.82193 0.83436 1.90859 1.33350 1.80306 1.33884 1.21848 1.01350 0.77863 1.01314 1.46741 1.43480 1.11335 1.06024 1.23240 1.08308 0.88691 0.99637 1.20998 1.05682 0.96345 0.89653 1.19995 0.96836 0.92256 1.00110 1.23021 1.03736 1.03613 0.90389 1.23016 0.91867 1.03737 1.01621 1.75097 1.14568 1.02506 1.20875 1.78478 1.17198 1.06843 1.00456 1.22428 0.95313 0.84009 0.99331 0.93441 0.78304 0.96338 0.96502 0.91423 0.91507 0.89864 0.89306 0.90998 0.91087 0.84747 0.85218 0.79362 0.85995 0.88635 0.87892 0.87993 0.88596 0.90058 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.27 5.60 -59.91 -0.34 -18.61 16 10 C 0.16 2.90 6.16 -4.04 -0.02 2.88 16 11 C -0.12 -1.66 4.83 -26.73 -0.13 -1.79 16 12 C -0.09 -1.01 3.01 -88.48 -0.27 -1.27 16 13 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.13 -1.05 5.90 -24.89 -0.15 -1.20 16 15 C 0.09 0.56 6.49 -3.06 -0.02 0.54 16 16 N -0.61 -5.71 3.33 -170.52 -0.57 -6.27 16 17 C 0.52 5.52 7.86 -10.99 -0.09 5.43 16 18 O -0.51 -8.12 15.93 5.55 0.09 -8.03 16 19 C 0.10 0.66 6.13 -5.20 -0.03 0.63 16 20 N -0.28 -2.85 3.20 -62.44 -0.20 -3.05 16 21 C -0.05 -0.40 10.89 -17.05 -0.19 -0.59 16 22 C 0.01 0.11 6.88 -82.78 -0.57 -0.46 16 23 C -0.07 -0.53 6.33 -91.77 -0.58 -1.11 16 24 C -0.17 -0.80 10.02 -26.73 -0.27 -1.07 16 25 C -0.16 -1.05 10.23 -26.73 -0.27 -1.32 16 26 N -0.26 -3.71 12.41 33.29 0.41 -3.30 16 27 N -0.05 -0.71 12.13 60.35 0.73 0.02 16 28 C 0.11 1.21 6.38 -2.53 -0.02 1.19 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.38 10.04 7.67 -40.82 -0.31 9.73 16 31 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 35 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.13 0.31 8.07 -51.93 -0.42 -0.11 16 40 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.19 0.72 7.45 -52.48 -0.39 0.33 16 42 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.37 7.22 -51.93 -0.38 0.00 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16 48 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -37.68 398.95 -8.76 -46.44 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.76 Total: 2.49 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.85 Total: -5.48 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.77 Total: -58.57 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.68 -8.76 -46.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569983610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.021 kcal (2) G-P(sol) polarization free energy of solvation -37.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds