Wall clock time and date at job start Tue Mar 31 2020 18:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.08996 * 110.89107 * 51.11607 * 12 11 10 14 14 C 1.55155 * 111.00311 * 287.19336 * 12 11 10 15 15 C 1.54329 * 102.94536 * 206.42169 * 14 12 11 16 16 N 1.47026 * 107.26752 * 22.19650 * 15 14 12 17 17 C 1.34774 * 125.64444 * 181.09249 * 16 15 14 18 18 O 1.21284 * 119.99380 * 179.97438 * 17 16 15 19 19 C 1.50695 * 120.00216 * 359.95665 * 17 16 15 20 20 N 1.46500 * 109.47025 * 179.97438 * 19 17 16 21 21 C 1.35317 * 125.86579 * 124.71349 * 20 19 17 22 22 C 1.35348 * 106.17806 * 179.90480 * 21 20 19 23 23 C 1.50700 * 126.75473 * 180.12536 * 22 21 20 24 24 C 1.53002 * 117.49507 * 343.92155 * 23 22 21 25 25 C 1.53003 * 60.00079 * 252.50868 * 24 23 22 26 26 N 1.33770 * 106.49169 * 0.35892 * 22 21 20 27 27 N 1.28633 * 108.89072 * 359.76739 * 26 22 21 28 28 C 1.47425 * 108.70161 * 1.05559 * 16 15 14 29 29 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 30 30 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47424 * 299.99703 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.00128 * 10 9 7 33 33 H 1.09000 * 109.46887 * 300.00491 * 11 10 9 34 34 H 1.08998 * 109.46846 * 59.99668 * 11 10 9 35 35 H 1.08996 * 110.72409 * 324.78775 * 14 12 11 36 36 H 1.09001 * 110.71958 * 88.06200 * 14 12 11 37 37 H 1.08993 * 109.88263 * 262.77493 * 15 14 12 38 38 H 1.09003 * 109.87780 * 141.60692 * 15 14 12 39 39 H 1.08993 * 109.47383 * 300.00096 * 19 17 16 40 40 H 1.09004 * 109.46886 * 60.00169 * 19 17 16 41 41 H 1.08005 * 126.90664 * 0.02562 * 21 20 19 42 42 H 1.08994 * 115.54654 * 129.62982 * 23 22 21 43 43 H 1.08995 * 117.50139 * 359.97438 * 24 23 22 44 44 H 1.09005 * 117.49167 * 145.02161 * 24 23 22 45 45 H 1.08995 * 117.49939 * 252.51001 * 25 24 23 46 46 H 1.09002 * 117.49067 * 107.48921 * 25 24 23 47 47 H 1.08997 * 110.36630 * 217.03059 * 28 16 15 48 48 H 1.09003 * 110.36518 * 94.71581 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.0637 -4.8197 -0.0228 12 6 1.8286 -6.1447 -0.0281 13 1 2.5760 -6.1652 0.7650 14 6 2.4785 -6.4061 -1.4126 15 6 2.5744 -7.9455 -1.4643 16 7 1.5802 -8.4767 -0.5204 17 6 1.3648 -9.7810 -0.2579 18 8 0.5145 -10.1058 0.5436 19 6 2.1802 -10.8357 -0.9605 20 7 1.7584 -12.1627 -0.5052 21 6 1.3404 -13.1769 -1.2975 22 6 1.0545 -14.2089 -0.4698 23 6 0.5521 -15.5725 -0.8688 24 6 -0.0186 -15.7300 -2.2796 25 6 -0.9555 -15.7389 -1.0700 26 7 1.3007 -13.7786 0.7727 27 7 1.7164 -12.5625 0.7175 28 6 0.8585 -7.3464 0.0919 29 1 -0.4850 0.8401 0.0041 30 1 0.3555 -2.3880 -0.0113 31 1 2.6846 -3.7106 -0.9072 32 1 2.6847 -3.7186 0.8727 33 1 0.4367 -4.7660 0.8672 34 1 0.4374 -4.7577 -0.9127 35 1 1.8417 -6.0323 -2.2143 36 1 3.4699 -5.9560 -1.4644 37 1 3.5738 -8.2647 -1.1688 38 1 2.3536 -8.2970 -2.4722 39 1 2.0284 -10.7552 -2.0368 40 1 3.2360 -10.6917 -0.7307 41 1 1.2543 -13.1658 -2.3741 42 1 1.1002 -16.4165 -0.4501 43 1 -0.0311 -14.8474 -2.9190 44 1 0.1541 -16.6780 -2.7894 45 1 -1.3992 -16.6926 -0.7841 46 1 -1.5839 -14.8621 -0.9138 47 1 0.6429 -7.5567 1.1394 48 1 -0.0638 -7.1453 -0.4531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569983610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:52 Heat of formation + Delta-G solvation = 80.097064 kcal Electronic energy + Delta-G solvation = -27254.519821 eV Core-core repulsion = 23346.976680 eV Total energy + Delta-G solvation = -3907.543141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.31973 -41.23930 -39.06570 -38.15267 -36.85451 -35.51471 -34.58975 -32.72325 -31.72584 -30.61751 -30.26359 -28.40576 -25.79226 -25.06312 -24.32691 -23.56412 -23.13737 -22.60755 -21.60065 -21.28469 -20.33458 -19.13999 -18.71280 -18.44171 -17.41713 -17.04802 -16.71886 -16.50662 -16.33629 -15.79088 -15.59805 -15.46231 -15.36985 -15.22713 -15.06887 -14.39490 -14.11972 -13.90884 -13.66446 -13.39418 -13.26129 -13.09016 -12.86094 -12.73099 -12.57937 -12.35128 -12.30658 -12.23278 -12.19797 -11.95940 -11.75697 -11.64055 -11.55965 -11.50999 -11.44804 -11.20870 -10.90214 -10.86068 -10.00855 -9.78770 -8.99429 -7.95054 -5.24113 0.52853 1.19225 1.33782 1.46698 1.47941 1.51070 1.57278 1.88735 2.56726 2.86616 3.09512 3.33051 3.38925 3.55456 3.62942 3.68865 3.80722 3.87918 3.95200 3.99181 4.05362 4.17539 4.26086 4.31448 4.34856 4.39129 4.45583 4.58581 4.61701 4.75797 4.77545 4.83958 4.84507 4.87211 4.96785 4.97997 5.04653 5.18138 5.21449 5.22104 5.29530 5.30057 5.39171 5.46160 5.50175 5.52739 6.27398 6.32651 6.88820 7.33329 7.49157 8.10984 8.32353 9.28427 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.041380 B = 0.001546 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.498556 B =18105.543739 C =18211.913291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.975 3.025 4 H -0.296 1.296 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.103 4.103 12 C -0.086 4.086 13 H 0.086 0.914 14 C -0.125 4.125 15 C 0.092 3.908 16 N -0.610 5.610 17 C 0.509 3.491 18 O -0.576 6.576 19 C 0.102 3.898 20 N -0.281 5.281 21 C -0.030 4.030 22 C -0.009 4.009 23 C -0.091 4.091 24 C -0.140 4.140 25 C -0.178 4.178 26 N -0.311 5.311 27 N -0.105 5.105 28 C 0.112 3.888 29 H 0.251 0.749 30 H 0.372 0.628 31 H 0.033 0.967 32 H 0.015 0.985 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.189 0.811 40 H 0.160 0.840 41 H 0.239 0.761 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.901 -31.670 -12.853 34.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.223 1.223 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.105 4.105 13 H 0.105 0.895 14 C -0.163 4.163 15 C -0.028 4.028 16 N -0.343 5.343 17 C 0.297 3.703 18 O -0.455 6.455 19 C -0.021 4.021 20 N -0.075 5.075 21 C -0.181 4.181 22 C -0.148 4.148 23 C -0.111 4.111 24 C -0.177 4.177 25 C -0.215 4.215 26 N -0.177 5.177 27 N -0.083 5.083 28 C -0.011 4.011 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.207 0.793 40 H 0.177 0.823 41 H 0.256 0.744 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.142 0.858 45 H 0.129 0.871 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.893 -31.395 -10.937 33.952 hybrid contribution -0.598 1.275 -0.244 1.429 sum 6.295 -30.120 -11.181 32.739 Atomic orbital electron populations 1.69821 1.06703 1.26143 1.59508 1.25603 0.96401 1.01253 1.03690 0.85194 0.77185 0.79005 0.78278 1.22273 1.20494 1.20032 1.19637 0.91602 0.85422 1.41288 0.90442 1.42639 1.05682 1.01526 1.89504 1.20803 0.94072 0.84451 0.97910 1.21501 0.97862 0.92887 1.01896 1.22166 0.97034 0.91679 0.99664 0.89538 1.22765 1.03051 0.94485 0.95958 1.22524 0.92387 0.94178 0.93754 1.48501 1.38495 1.04026 1.43300 1.20560 0.84042 0.83002 0.82721 1.90842 1.36396 1.81334 1.36880 1.22301 1.01667 0.74735 1.03440 1.47049 1.42479 1.12628 1.05304 1.23994 1.05544 0.87195 1.01334 1.21604 1.06002 0.98165 0.88986 1.20089 0.97216 0.91047 1.02776 1.23170 1.00216 1.05253 0.89071 1.23043 0.91338 1.03483 1.03655 1.75008 1.15988 1.03203 1.23492 1.78393 1.19805 1.07316 1.02818 1.22225 0.95627 0.85058 0.98183 0.94051 0.79635 0.94921 0.96691 0.92982 0.91542 0.90049 0.88319 0.88202 0.87433 0.79342 0.82270 0.74447 0.86076 0.87120 0.85839 0.87066 0.90369 0.92517 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 4 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -37.62 5.60 -343.46 -1.92 -39.55 16 10 C 0.15 5.67 6.16 86.38 0.53 6.20 16 11 C -0.10 -2.95 4.83 30.59 0.15 -2.80 16 12 C -0.09 -1.75 3.01 -9.41 -0.03 -1.78 16 13 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.12 -1.67 5.90 31.78 0.19 -1.48 16 15 C 0.09 0.71 6.49 86.73 0.56 1.27 16 16 N -0.61 -10.01 3.33 -811.79 -2.70 -12.71 16 17 C 0.51 10.13 7.86 87.66 0.69 10.82 16 18 O -0.58 -18.92 15.93 -3.04 -0.05 -18.97 16 19 C 0.10 0.94 6.13 85.63 0.52 1.46 16 20 N -0.28 -5.16 3.20 -351.47 -1.12 -6.29 16 21 C -0.03 -0.42 10.89 83.49 0.91 0.49 16 22 C -0.01 -0.19 6.88 41.60 0.29 0.10 16 23 C -0.09 -1.25 6.33 -11.54 -0.07 -1.33 16 24 C -0.14 -0.90 10.02 30.60 0.31 -0.60 16 25 C -0.18 -2.12 10.23 30.60 0.31 -1.81 16 26 N -0.31 -9.16 12.41 -48.60 -0.60 -9.76 16 27 N -0.10 -3.04 12.13 37.02 0.45 -2.59 16 28 C 0.11 2.43 6.38 86.85 0.55 2.98 16 29 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 30 H 0.37 19.98 7.67 -92.71 -0.71 19.27 16 31 H 0.03 1.14 7.75 -2.39 -0.02 1.12 16 32 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.90 7.97 -2.39 -0.02 1.88 16 35 H 0.08 1.16 7.92 -2.39 -0.02 1.14 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.19 -0.38 8.07 -2.39 -0.02 -0.40 16 40 H 0.16 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.24 0.49 7.45 -2.91 -0.02 0.47 16 42 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 0.38 7.22 -2.39 -0.02 0.36 16 44 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 1.50 8.04 -2.39 -0.02 1.48 16 48 H 0.07 1.55 8.04 -2.39 -0.02 1.53 16 Total: -1.00 -88.99 398.95 2.83 -86.16 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.25 Total: 18.52 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 6.22 Total: -3.27 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -5.62 Total: -130.02 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -88.99 2.83 -86.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569983610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.258 kcal (2) G-P(sol) polarization free energy of solvation -88.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds