Wall clock time and date at job start Tue Mar 31 2020 18:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47478 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.88494 * 308.88126 * 12 11 10 14 14 C 1.55160 * 111.00197 * 72.80247 * 12 11 10 15 15 C 1.54318 * 102.94104 * 153.57806 * 14 12 11 16 16 N 1.47020 * 107.27247 * 337.80588 * 15 14 12 17 17 C 1.34780 * 125.64932 * 178.90724 * 16 15 14 18 18 O 1.21279 * 119.99744 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99868 * 0.03767 * 17 16 15 20 20 N 1.46503 * 109.46803 * 180.02562 * 19 17 16 21 21 C 1.35312 * 125.86676 * 124.71559 * 20 19 17 22 22 C 1.35344 * 106.17610 * 179.90213 * 21 20 19 23 23 C 1.50700 * 126.75568 * 180.12485 * 22 21 20 24 24 C 1.53004 * 117.49676 * 344.00018 * 23 22 21 25 25 C 1.53005 * 117.50091 * 275.34063 * 23 22 21 26 26 N 1.33773 * 106.49734 * 0.35551 * 22 21 20 27 27 N 1.28641 * 108.88498 * 359.77122 * 26 22 21 28 28 C 1.47428 * 108.70256 * 358.94117 * 16 15 14 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 32 32 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 33 33 H 1.09004 * 109.46862 * 299.99801 * 11 10 9 34 34 H 1.09000 * 109.47250 * 59.99778 * 11 10 9 35 35 H 1.08997 * 110.72096 * 271.94483 * 14 12 11 36 36 H 1.09000 * 110.72134 * 35.21685 * 14 12 11 37 37 H 1.09005 * 109.88193 * 218.38773 * 15 14 12 38 38 H 1.09002 * 110.01165 * 97.29428 * 15 14 12 39 39 H 1.08992 * 109.47181 * 300.00309 * 19 17 16 40 40 H 1.08994 * 109.46738 * 60.00313 * 19 17 16 41 41 H 1.08000 * 126.91118 * 0.02562 * 21 20 19 42 42 H 1.08995 * 115.55332 * 129.66241 * 23 22 21 43 43 H 1.09007 * 117.49700 * 359.97438 * 24 23 22 44 44 H 1.08995 * 117.50153 * 145.02152 * 24 23 22 45 45 H 1.08998 * 117.49946 * 214.97418 * 25 23 22 46 46 H 1.09004 * 117.49532 * 359.97438 * 25 23 22 47 47 H 1.08997 * 110.36633 * 265.29034 * 28 16 15 48 48 H 1.08998 * 110.36595 * 142.96744 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.3815 -3.5162 0.0017 13 1 6.0222 -4.1720 0.7947 14 6 6.2888 -4.2125 -1.3818 15 6 7.5742 -5.0654 -1.4262 16 7 8.5273 -4.4680 -0.4795 17 6 9.7635 -4.9331 -0.2108 18 8 10.4665 -4.3575 0.5926 19 6 10.2721 -6.1681 -0.9087 20 7 11.6303 -6.4655 -0.4470 21 6 12.0475 -7.6365 0.0874 22 6 13.3616 -7.4758 0.3686 23 6 14.2853 -8.4991 0.9773 24 6 13.6462 -9.7103 1.6597 25 6 14.3042 -8.6150 2.5028 26 7 13.6781 -6.2280 0.0047 27 7 12.6305 -5.6558 -0.4749 28 6 7.9067 -3.2766 0.1277 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8486 -3.0425 0.8909 32 1 3.8493 -3.0422 -0.8891 33 1 5.8797 -1.6196 -0.8890 34 1 5.8797 -1.6196 0.8910 35 1 5.4035 -4.8461 -1.4361 36 1 6.2869 -3.4757 -2.1850 37 1 7.9933 -5.0520 -2.4324 38 1 7.3518 -6.0908 -1.1310 39 1 9.6185 -7.0099 -0.6800 40 1 10.2829 -5.9986 -1.9853 41 1 11.4521 -8.5220 0.2540 42 1 15.2254 -8.6572 0.4489 43 1 12.5577 -9.7666 1.6688 44 1 14.1661 -10.6650 1.5807 45 1 15.2567 -8.8497 2.9780 46 1 13.6488 -7.9508 3.0662 47 1 8.1960 -2.3784 -0.4179 48 1 8.1922 -3.1929 1.1763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569983611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:57 Heat of formation + Delta-G solvation = 110.607600 kcal Electronic energy + Delta-G solvation = -27331.337011 eV Core-core repulsion = 23425.116907 eV Total energy + Delta-G solvation = -3906.220104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.62968 -40.50839 -38.26453 -37.66545 -35.46042 -34.82630 -33.20942 -31.33440 -31.07285 -29.92160 -29.52300 -27.47708 -24.49892 -24.26503 -23.22405 -23.05727 -22.17843 -21.41319 -20.97321 -20.44361 -19.69584 -18.09894 -17.74775 -17.62956 -16.84245 -16.41157 -15.88790 -15.57779 -15.09610 -14.96912 -14.83820 -14.69455 -14.42663 -14.08393 -13.66044 -13.40214 -13.20326 -12.99366 -12.79768 -12.72619 -12.42512 -12.02542 -11.92746 -11.87768 -11.71742 -11.55238 -11.37203 -11.18498 -10.94589 -10.83478 -10.75887 -10.71434 -10.58458 -10.52681 -10.16020 -10.10163 -9.63239 -9.37820 -9.09412 -8.93431 -7.27666 -5.80838 -3.16751 1.17512 1.71648 2.02442 2.18834 2.52859 3.31874 3.34606 3.37670 3.42954 3.64138 3.83727 4.02511 4.23014 4.27558 4.33934 4.37532 4.41342 4.48305 4.55649 4.57994 4.76538 4.81732 4.91130 5.01436 5.14050 5.16510 5.32740 5.35014 5.40003 5.40245 5.50314 5.57476 5.59599 5.62623 5.65760 5.70073 5.78549 5.79524 5.88071 5.95467 6.03611 6.10780 6.18338 6.64723 6.69007 6.97100 7.58262 7.94929 8.22787 8.38180 9.17278 9.89781 10.09129 11.37472 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032849 B = 0.001643 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.186345 B =17040.201619 C =17177.733707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.159 3.841 11 C -0.121 4.121 12 C -0.094 4.094 13 H 0.088 0.912 14 C -0.127 4.127 15 C 0.092 3.908 16 N -0.614 5.614 17 C 0.516 3.484 18 O -0.510 6.510 19 C 0.102 3.898 20 N -0.283 5.283 21 C -0.049 4.049 22 C 0.010 3.990 23 C -0.072 4.072 24 C -0.170 4.170 25 C -0.165 4.165 26 N -0.263 5.263 27 N -0.051 5.051 28 C 0.111 3.889 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.190 0.810 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.261 -22.406 -2.358 33.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.403 5.403 10 C 0.032 3.968 11 C -0.159 4.159 12 C -0.113 4.113 13 H 0.107 0.893 14 C -0.165 4.165 15 C -0.030 4.030 16 N -0.349 5.349 17 C 0.301 3.699 18 O -0.384 6.384 19 C -0.024 4.024 20 N -0.076 5.076 21 C -0.198 4.198 22 C -0.127 4.127 23 C -0.092 4.092 24 C -0.207 4.207 25 C -0.202 4.202 26 N -0.130 5.130 27 N -0.030 5.030 28 C -0.011 4.011 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.207 0.793 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 25.941 -20.773 -2.313 33.314 hybrid contribution -0.200 0.182 0.132 0.301 sum 25.741 -20.591 -2.181 33.035 Atomic orbital electron populations 1.69705 1.05117 1.25875 1.57477 1.24683 0.95254 0.97264 1.01948 0.86534 0.79174 0.84894 0.77821 1.21050 1.20346 1.21687 1.19052 0.80651 0.94734 1.43195 0.89257 1.42718 1.04095 1.02307 1.91225 1.20594 0.88270 0.89354 0.98582 1.21731 0.96414 0.95194 1.02544 1.22336 0.92990 0.98307 0.97696 0.89337 1.22754 0.96174 0.99391 0.98162 1.22254 0.90196 0.97796 0.92789 1.48432 1.13754 1.29409 1.43322 1.19793 0.80992 0.85730 0.83415 1.90859 1.54989 1.58459 1.34072 1.21845 0.79082 0.99685 1.01752 1.46737 1.09891 1.09694 1.41289 1.23241 0.97248 0.92666 1.06658 1.21001 0.92499 0.94069 1.05092 1.19999 0.98964 0.95285 0.94977 1.23035 1.00594 0.93418 1.03703 1.23028 1.03091 1.01763 0.92366 1.75100 1.18910 1.05721 1.13303 1.78476 0.89726 1.17000 1.17845 1.22414 0.92184 0.87149 0.99327 0.93030 0.80676 0.95636 0.95503 0.91501 0.91458 0.89149 0.89831 0.90979 0.91007 0.84704 0.85220 0.79335 0.85993 0.88621 0.87873 0.87986 0.88595 0.90782 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 21.89 27.74 -169.99 -4.71 17.17 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.76 -17.49 5.41 -59.91 -0.32 -17.82 16 10 C 0.16 2.79 6.16 -4.05 -0.02 2.77 16 11 C -0.12 -1.57 4.83 -26.73 -0.13 -1.70 16 12 C -0.09 -0.91 3.01 -88.47 -0.27 -1.18 16 13 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.13 -0.97 5.90 -24.90 -0.15 -1.12 16 15 C 0.09 0.52 6.49 -3.07 -0.02 0.50 16 16 N -0.61 -5.37 3.33 -170.52 -0.57 -5.94 16 17 C 0.52 5.29 7.86 -10.98 -0.09 5.20 16 18 O -0.51 -7.88 15.93 5.56 0.09 -7.79 16 19 C 0.10 0.62 6.13 -5.19 -0.03 0.59 16 20 N -0.28 -2.77 3.20 -62.45 -0.20 -2.97 16 21 C -0.05 -0.39 10.89 -17.05 -0.19 -0.57 16 22 C 0.01 0.11 6.88 -82.78 -0.57 -0.46 16 23 C -0.07 -0.52 6.33 -91.77 -0.58 -1.10 16 24 C -0.17 -0.78 10.03 -26.69 -0.27 -1.05 16 25 C -0.16 -1.03 10.24 -26.69 -0.27 -1.30 16 26 N -0.26 -3.65 12.41 33.29 0.41 -3.23 16 27 N -0.05 -0.71 12.13 60.35 0.73 0.02 16 28 C 0.11 1.13 6.38 -2.53 -0.02 1.11 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 30 H 0.36 8.14 5.53 -40.82 -0.23 7.91 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.03 0.47 7.75 -51.93 -0.40 0.06 16 33 H 0.07 0.87 7.97 -51.93 -0.41 0.45 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.14 0.27 8.07 -51.93 -0.42 -0.15 16 40 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.19 0.68 7.44 -52.49 -0.39 0.29 16 42 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.36 7.22 -51.93 -0.38 -0.01 16 44 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 48 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 LS Contribution 395.84 15.07 5.97 5.97 Total: -1.00 -38.49 395.84 -8.40 -46.88 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.71 Total: 1.33 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.85 Total: -5.32 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.83 Total: -58.24 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.49 -8.40 -46.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569983611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.491 kcal (2) G-P(sol) polarization free energy of solvation -38.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds