Wall clock time and date at job start Tue Mar 31 2020 18:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47478 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.88494 * 308.88126 * 12 11 10 14 14 C 1.55160 * 111.00197 * 72.80247 * 12 11 10 15 15 C 1.54318 * 102.94104 * 153.57806 * 14 12 11 16 16 N 1.47020 * 107.27247 * 337.80588 * 15 14 12 17 17 C 1.34780 * 125.64932 * 178.90724 * 16 15 14 18 18 O 1.21279 * 119.99744 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99868 * 0.03767 * 17 16 15 20 20 N 1.46503 * 109.46803 * 180.02562 * 19 17 16 21 21 C 1.35312 * 125.86676 * 124.71559 * 20 19 17 22 22 C 1.35344 * 106.17610 * 179.90213 * 21 20 19 23 23 C 1.50700 * 126.75568 * 180.12485 * 22 21 20 24 24 C 1.53004 * 117.49676 * 344.00018 * 23 22 21 25 25 C 1.53005 * 117.50091 * 275.34063 * 23 22 21 26 26 N 1.33773 * 106.49734 * 0.35551 * 22 21 20 27 27 N 1.28641 * 108.88498 * 359.77122 * 26 22 21 28 28 C 1.47428 * 108.70256 * 358.94117 * 16 15 14 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 32 32 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 33 33 H 1.09004 * 109.46862 * 299.99801 * 11 10 9 34 34 H 1.09000 * 109.47250 * 59.99778 * 11 10 9 35 35 H 1.08997 * 110.72096 * 271.94483 * 14 12 11 36 36 H 1.09000 * 110.72134 * 35.21685 * 14 12 11 37 37 H 1.09005 * 109.88193 * 218.38773 * 15 14 12 38 38 H 1.09002 * 110.01165 * 97.29428 * 15 14 12 39 39 H 1.08992 * 109.47181 * 300.00309 * 19 17 16 40 40 H 1.08994 * 109.46738 * 60.00313 * 19 17 16 41 41 H 1.08000 * 126.91118 * 0.02562 * 21 20 19 42 42 H 1.08995 * 115.55332 * 129.66241 * 23 22 21 43 43 H 1.09007 * 117.49700 * 359.97438 * 24 23 22 44 44 H 1.08995 * 117.50153 * 145.02152 * 24 23 22 45 45 H 1.08998 * 117.49946 * 214.97418 * 25 23 22 46 46 H 1.09004 * 117.49532 * 359.97438 * 25 23 22 47 47 H 1.08997 * 110.36633 * 265.29034 * 28 16 15 48 48 H 1.08998 * 110.36595 * 142.96744 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.3815 -3.5162 0.0017 13 1 6.0222 -4.1720 0.7947 14 6 6.2888 -4.2125 -1.3818 15 6 7.5742 -5.0654 -1.4262 16 7 8.5273 -4.4680 -0.4795 17 6 9.7635 -4.9331 -0.2108 18 8 10.4665 -4.3575 0.5926 19 6 10.2721 -6.1681 -0.9087 20 7 11.6303 -6.4655 -0.4470 21 6 12.0475 -7.6365 0.0874 22 6 13.3616 -7.4758 0.3686 23 6 14.2853 -8.4991 0.9773 24 6 13.6462 -9.7103 1.6597 25 6 14.3042 -8.6150 2.5028 26 7 13.6781 -6.2280 0.0047 27 7 12.6305 -5.6558 -0.4749 28 6 7.9067 -3.2766 0.1277 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8486 -3.0425 0.8909 32 1 3.8493 -3.0422 -0.8891 33 1 5.8797 -1.6196 -0.8890 34 1 5.8797 -1.6196 0.8910 35 1 5.4035 -4.8461 -1.4361 36 1 6.2869 -3.4757 -2.1850 37 1 7.9933 -5.0520 -2.4324 38 1 7.3518 -6.0908 -1.1310 39 1 9.6185 -7.0099 -0.6800 40 1 10.2829 -5.9986 -1.9853 41 1 11.4521 -8.5220 0.2540 42 1 15.2254 -8.6572 0.4489 43 1 12.5577 -9.7666 1.6688 44 1 14.1661 -10.6650 1.5807 45 1 15.2567 -8.8497 2.9780 46 1 13.6488 -7.9508 3.0662 47 1 8.1960 -2.3784 -0.4179 48 1 8.1922 -3.1929 1.1763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569983611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:56 Heat of formation + Delta-G solvation = 83.019372 kcal Electronic energy + Delta-G solvation = -27332.533327 eV Core-core repulsion = 23425.116907 eV Total energy + Delta-G solvation = -3907.416420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.32410 -41.24245 -39.08101 -38.15334 -37.00790 -35.51871 -34.60258 -33.05754 -31.73000 -30.74920 -30.33494 -28.57398 -25.62424 -25.06679 -24.23028 -23.57154 -23.10772 -22.61965 -21.60579 -21.32790 -20.37144 -19.61988 -18.70333 -18.38311 -17.50556 -17.16399 -16.63312 -16.44277 -16.32369 -15.81254 -15.76103 -15.59011 -15.44903 -15.21273 -14.77757 -14.41039 -14.31005 -14.00145 -13.74234 -13.50715 -13.33707 -13.22778 -12.93672 -12.83046 -12.58646 -12.39546 -12.31273 -12.20315 -12.10190 -11.90335 -11.76115 -11.75222 -11.55601 -11.50645 -11.45029 -11.21293 -10.95821 -10.86665 -10.01322 -9.78855 -9.28905 -8.03427 -5.36614 0.52388 1.18760 1.33414 1.37746 1.40734 1.46093 1.48132 1.88449 2.47862 2.86117 3.09045 3.28588 3.32401 3.46706 3.62722 3.66505 3.74746 3.87576 3.95062 3.98638 4.00220 4.04834 4.25611 4.31484 4.33018 4.39029 4.44038 4.53012 4.59262 4.74535 4.75739 4.83135 4.83757 4.87006 4.96561 4.97860 5.04114 5.17671 5.20970 5.21666 5.28001 5.29518 5.36491 5.45231 5.52259 5.75966 6.21044 6.31901 6.88435 7.08243 7.48500 7.85692 8.02870 9.17947 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032849 B = 0.001643 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.186345 B =17040.201619 C =17177.733707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.250 1.250 6 H -0.296 1.296 7 C -0.236 4.236 8 H 0.059 0.941 9 N -0.763 5.763 10 C 0.155 3.845 11 C -0.109 4.109 12 C -0.085 4.085 13 H 0.091 0.909 14 C -0.127 4.127 15 C 0.092 3.908 16 N -0.610 5.610 17 C 0.510 3.490 18 O -0.575 6.575 19 C 0.101 3.899 20 N -0.281 5.281 21 C -0.030 4.030 22 C -0.009 4.009 23 C -0.091 4.091 24 C -0.140 4.140 25 C -0.177 4.177 26 N -0.311 5.311 27 N -0.104 5.104 28 C 0.111 3.889 29 H 0.258 0.742 30 H 0.365 0.635 31 H 0.022 0.978 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.188 0.812 40 H 0.160 0.840 41 H 0.239 0.761 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.073 -25.052 -3.449 36.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.175 1.175 6 H -0.223 1.223 7 C -0.367 4.367 8 H 0.077 0.923 9 N -0.409 5.409 10 C 0.030 3.970 11 C -0.147 4.147 12 C -0.105 4.105 13 H 0.109 0.891 14 C -0.165 4.165 15 C -0.029 4.029 16 N -0.344 5.344 17 C 0.297 3.703 18 O -0.454 6.454 19 C -0.022 4.022 20 N -0.075 5.075 21 C -0.181 4.181 22 C -0.148 4.148 23 C -0.111 4.111 24 C -0.178 4.178 25 C -0.215 4.215 26 N -0.177 5.177 27 N -0.083 5.083 28 C -0.011 4.011 29 H 0.066 0.934 30 H 0.198 0.802 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.205 0.795 40 H 0.177 0.823 41 H 0.255 0.745 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.141 0.859 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.776 -23.443 -3.444 35.755 hybrid contribution -0.528 0.886 0.500 1.146 sum 26.248 -22.557 -2.944 34.734 Atomic orbital electron populations 1.69884 1.07120 1.26667 1.59749 1.25514 0.96121 1.01270 1.02695 0.85416 0.78736 0.79663 0.78003 1.20718 1.17477 1.22252 1.19069 0.82847 0.93516 1.41223 0.92340 1.42797 1.02544 1.04548 1.91026 1.20799 0.90591 0.87130 0.98517 1.21583 0.93485 0.97156 1.02515 1.22167 0.92015 0.96711 0.99569 0.89081 1.22776 0.97881 0.99633 0.96175 1.22508 0.88285 0.98641 0.93457 1.48495 1.13872 1.28749 1.43236 1.20530 0.80607 0.86461 0.82672 1.90840 1.56738 1.60667 1.37121 1.22302 0.77950 0.99331 1.02640 1.47045 1.10335 1.09669 1.40411 1.23981 0.96826 0.93184 1.04070 1.21596 0.94246 0.93465 1.05446 1.20091 0.99299 0.96504 0.95230 1.23182 1.01505 0.92966 1.00116 1.23056 1.03737 1.02894 0.91824 1.75012 1.20097 1.07807 1.14750 1.78388 0.90920 1.18678 1.20280 1.22242 0.92517 0.88007 0.98365 0.93366 0.80227 0.96008 0.94714 0.91124 0.91996 0.88254 0.90235 0.88364 0.87579 0.79454 0.82305 0.74512 0.86081 0.87129 0.85864 0.87069 0.90332 0.91461 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.59 13.97 21.65 0.30 -62.29 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.95 45.06 27.74 68.60 1.90 46.96 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 6 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.24 -13.24 10.47 84.03 0.88 -12.36 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 9 N -0.76 -34.46 5.41 -343.47 -1.86 -36.32 16 10 C 0.16 5.25 6.16 86.38 0.53 5.78 16 11 C -0.11 -2.67 4.83 30.59 0.15 -2.52 16 12 C -0.08 -1.48 3.01 -9.40 -0.03 -1.51 16 13 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.13 -1.50 5.90 31.78 0.19 -1.32 16 15 C 0.09 0.61 6.49 86.73 0.56 1.17 16 16 N -0.61 -9.10 3.33 -811.81 -2.70 -11.80 16 17 C 0.51 9.53 7.86 87.66 0.69 10.22 16 18 O -0.57 -18.10 15.93 -3.03 -0.05 -18.15 16 19 C 0.10 0.85 6.13 85.63 0.53 1.38 16 20 N -0.28 -4.97 3.20 -351.48 -1.12 -6.09 16 21 C -0.03 -0.40 10.89 83.49 0.91 0.51 16 22 C -0.01 -0.18 6.88 41.59 0.29 0.10 16 23 C -0.09 -1.22 6.33 -11.54 -0.07 -1.29 16 24 C -0.14 -0.87 10.03 30.62 0.31 -0.56 16 25 C -0.18 -2.06 10.24 30.62 0.31 -1.74 16 26 N -0.31 -8.94 12.41 -48.60 -0.60 -9.54 16 27 N -0.10 -2.94 12.13 37.02 0.45 -2.49 16 28 C 0.11 2.15 6.38 86.85 0.55 2.70 16 29 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.36 15.77 5.53 -92.71 -0.51 15.25 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.03 1.14 7.75 -2.39 -0.02 1.12 16 33 H 0.07 1.69 7.97 -2.38 -0.02 1.67 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.04 7.92 -2.39 -0.02 1.02 16 37 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.19 -0.47 8.07 -2.39 -0.02 -0.49 16 40 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.24 0.41 7.44 -2.91 -0.02 0.39 16 42 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 0.36 7.22 -2.38 -0.02 0.34 16 44 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 1.17 8.14 -2.38 -0.02 1.16 16 47 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 48 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 Total: -1.00 -91.13 395.84 2.97 -88.15 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.39 Total: 14.31 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.26 Total: -2.75 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -5.53 Total: -128.53 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.05 Total: -18.15 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -91.13 2.97 -88.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569983611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.174 kcal (2) G-P(sol) polarization free energy of solvation -91.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds