Wall clock time and date at job start Tue Mar 31 2020 17:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47473 * 2 1 4 4 C 1.50697 * 109.47527 * 240.00091 * 2 1 3 5 5 H 1.07997 * 120.00091 * 274.47470 * 4 2 1 6 6 C 1.37881 * 120.00054 * 94.46817 * 4 2 1 7 7 N 1.31514 * 119.99976 * 184.56346 * 6 4 2 8 8 Si 1.86800 * 120.00119 * 4.56671 * 6 4 2 9 9 H 1.48497 * 109.47022 * 84.67973 * 8 6 4 10 10 H 1.48491 * 109.47105 * 204.68497 * 8 6 4 11 11 H 1.48509 * 109.46716 * 324.68440 * 8 6 4 12 12 N 1.46503 * 109.47012 * 119.99927 * 2 1 3 13 13 C 1.46494 * 119.99776 * 60.00469 * 12 2 1 14 14 S 1.65598 * 119.99893 * 239.99885 * 12 2 1 15 15 O 1.42106 * 106.40151 * 156.46177 * 14 12 2 16 16 O 1.42102 * 106.40463 * 23.54425 * 14 12 2 17 17 N 1.65606 * 107.22012 * 270.00072 * 14 12 2 18 18 C 1.46496 * 119.99624 * 65.00026 * 17 14 12 19 19 C 1.53002 * 109.46799 * 164.99712 * 18 17 14 20 20 C 1.53003 * 109.47172 * 179.97438 * 19 18 17 21 21 H 1.08998 * 109.03268 * 306.05217 * 20 19 18 22 22 C 1.54520 * 109.04235 * 187.16524 * 20 19 18 23 23 C 1.50543 * 108.86727 * 162.21487 * 22 20 19 24 24 C 1.53916 * 112.94168 * 91.75288 * 23 22 20 25 25 N 1.47946 * 113.32998 * 317.74840 * 24 23 22 26 26 C 1.44303 * 113.64482 * 318.14518 * 25 24 23 27 27 C 1.45879 * 109.03860 * 65.00583 * 20 19 18 28 28 H 1.09000 * 109.47279 * 174.95685 * 1 2 3 29 29 H 1.09000 * 109.47160 * 294.95266 * 1 2 3 30 30 H 1.09000 * 109.47116 * 54.95176 * 1 2 3 31 31 H 0.96998 * 120.00384 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46835 * 269.99432 * 13 12 2 33 33 H 1.08993 * 109.47493 * 29.99870 * 13 12 2 34 34 H 1.09004 * 109.47104 * 149.99759 * 13 12 2 35 35 H 0.96998 * 119.99963 * 245.00000 * 17 14 12 36 36 H 1.08991 * 109.47817 * 284.99828 * 18 17 14 37 37 H 1.09004 * 109.47475 * 45.00655 * 18 17 14 38 38 H 1.08992 * 109.47514 * 299.99999 * 19 18 17 39 39 H 1.09000 * 109.46920 * 60.00660 * 19 18 17 40 40 H 1.09004 * 109.57354 * 282.02456 * 22 20 19 41 41 H 1.09000 * 109.57443 * 42.39346 * 22 20 19 42 42 H 1.08998 * 108.78912 * 330.85567 * 23 22 20 43 43 H 1.08998 * 108.69264 * 212.57870 * 23 22 20 44 44 H 1.09007 * 108.71101 * 196.76111 * 24 23 22 45 45 H 1.08995 * 108.71837 * 78.74361 * 24 23 22 46 46 H 1.00898 * 110.99887 * 192.19571 * 25 24 23 47 47 H 1.09008 * 109.69473 * 335.69266 * 26 25 24 48 48 H 1.08995 * 109.69621 * 215.10509 * 26 25 24 49 49 H 1.09002 * 108.84188 * 302.88002 * 27 20 19 50 50 H 1.08998 * 108.84430 * 61.33980 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1436 -1.7846 -1.2262 6 6 2.3499 0.0111 -2.3617 7 7 2.7023 -0.6147 -3.4634 8 14 2.2797 1.8775 -2.3294 9 1 3.5579 2.4118 -1.7945 10 1 2.0675 2.3887 -3.7073 11 1 1.1579 2.3157 -1.4606 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 16 2.9703 0.1142 2.2862 15 8 2.8227 -0.5646 3.5259 16 8 2.6903 1.4973 2.1193 17 7 4.5437 -0.1042 1.8180 18 6 5.0138 0.4530 0.5473 19 6 6.5436 0.4451 0.5219 20 6 7.0347 1.0264 -0.8054 21 1 6.5649 0.4846 -1.6263 22 6 8.5669 0.8487 -0.8975 23 6 8.9896 1.0047 -2.3340 24 6 9.3728 2.4515 -2.6929 25 7 8.4524 3.4599 -2.1231 26 6 7.0608 3.0887 -2.2114 27 6 6.6500 2.4315 -0.8809 28 1 -0.3634 -1.0237 -0.0903 29 1 -0.3633 0.4335 0.9317 30 1 -0.3633 0.5901 -0.8413 31 1 2.9261 -0.1072 -4.2591 32 1 0.7375 -2.1444 1.9993 33 1 1.5296 -2.5968 0.4708 34 1 2.4629 -2.5819 1.9863 35 1 5.1540 -0.6010 2.3851 36 1 4.6337 -0.1504 -0.2769 37 1 4.6542 1.4768 0.4443 38 1 6.9239 1.0485 1.3461 39 1 6.9034 -0.5787 0.6249 40 1 9.0597 1.6060 -0.2877 41 1 8.8414 -0.1444 -0.5418 42 1 8.1687 0.6889 -2.9777 43 1 9.8478 0.3583 -2.5177 44 1 9.3749 2.5537 -3.7782 45 1 10.3793 2.6486 -2.3238 46 1 8.6113 4.3676 -2.5341 47 1 6.9203 2.3817 -3.0291 48 1 6.4538 3.9773 -2.3850 49 1 5.5682 2.5068 -0.7703 50 1 7.1254 2.9712 -0.0619 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575911304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:33 Heat of formation + Delta-G solvation = -90.786265 kcal Electronic energy + Delta-G solvation = -29424.271945 eV Core-core repulsion = 25612.469948 eV Total energy + Delta-G solvation = -3811.801998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.19749 -36.77881 -36.28910 -35.90198 -35.27830 -33.57930 -32.52908 -32.27033 -29.93675 -28.72043 -25.74328 -25.65069 -25.19974 -24.46159 -21.97891 -20.66892 -19.99392 -19.79941 -18.74324 -17.47644 -17.01275 -16.75271 -16.56102 -15.92977 -15.19155 -14.94896 -14.78521 -14.46160 -14.22532 -13.74866 -13.58149 -13.31507 -13.21498 -12.95731 -12.65739 -12.61981 -12.50776 -12.03949 -11.94430 -11.79362 -11.71397 -11.57222 -11.49065 -11.40304 -11.23747 -11.11768 -11.03375 -10.81924 -10.72856 -10.60258 -10.37934 -10.29278 -10.26797 -9.99487 -9.87388 -9.42362 -8.95895 -8.69859 -8.35984 -8.05927 -6.26070 -4.26558 1.23994 3.16795 3.26717 3.35229 3.50191 4.12236 4.15139 4.26163 4.67947 4.84262 4.90928 4.99193 5.08609 5.12403 5.20333 5.28381 5.37393 5.52896 5.58013 5.63118 5.65240 5.75229 5.80049 5.90951 5.98041 6.05158 6.07527 6.10184 6.16881 6.21530 6.28391 6.34664 6.38755 6.43853 6.47047 6.50713 6.57725 6.63185 6.68946 6.71441 6.95418 7.13075 7.19028 7.32100 7.37789 7.46719 7.67673 8.35757 8.79439 9.35321 10.85234 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.004895 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.202160 B = 5718.811872 C = 6943.471008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.232 3.768 3 H 0.055 0.945 4 C -0.518 4.518 5 H 0.083 0.917 6 C 0.082 3.918 7 N -0.886 5.886 8 Si 0.850 3.150 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.987 5.987 13 C 0.107 3.893 14 S 2.777 3.223 15 O -1.000 7.000 16 O -0.988 6.988 17 N -1.128 6.128 18 C 0.111 3.889 19 C -0.117 4.117 20 C -0.083 4.083 21 H 0.073 0.927 22 C -0.102 4.102 23 C -0.123 4.123 24 C 0.067 3.933 25 N -0.699 5.699 26 C 0.065 3.935 27 C -0.118 4.118 28 H 0.052 0.948 29 H 0.027 0.973 30 H 0.053 0.947 31 H 0.266 0.734 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.407 0.593 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.340 0.660 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.614 2.864 3.034 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.128 3.872 3 H 0.073 0.927 4 C -0.558 4.558 5 H 0.101 0.899 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.676 3.324 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.829 5.829 13 C -0.039 4.039 14 S 2.787 3.213 15 O -0.984 6.984 16 O -0.971 6.971 17 N -0.887 5.887 18 C -0.015 4.015 19 C -0.156 4.156 20 C -0.102 4.102 21 H 0.091 0.909 22 C -0.140 4.140 23 C -0.161 4.161 24 C -0.062 4.062 25 N -0.331 5.331 26 C -0.065 4.065 27 C -0.156 4.156 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.239 0.761 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.158 0.842 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.286 3.239 4.090 11.534 hybrid contribution 0.218 0.662 -1.306 1.480 sum 10.504 3.901 2.784 11.545 Atomic orbital electron populations 1.22168 0.98010 1.01108 0.99106 1.19106 0.91859 0.92885 0.83312 0.92681 1.21185 1.44000 0.96116 0.94480 0.89902 1.24930 0.94170 0.97835 0.95319 1.69884 1.45006 1.35820 1.01582 0.87290 0.80479 0.86919 0.77711 1.18748 1.21166 1.18432 1.57863 1.64721 1.21444 1.38883 1.21186 0.99031 0.81777 1.01906 1.01955 0.72860 0.73716 0.72802 1.93545 1.86036 1.76046 1.42764 1.93557 1.84148 1.32743 1.86684 1.55913 1.30266 1.70863 1.31671 1.21511 0.95160 0.99384 0.85471 1.21838 0.94576 1.01318 0.97823 1.20148 0.95461 0.96845 0.97765 0.90878 1.21316 0.95315 1.01245 0.96123 1.21396 1.01466 0.95190 0.98014 1.22192 0.96142 0.91864 0.96004 1.59077 1.05236 1.05146 1.63598 1.21605 0.87945 0.99508 0.97451 1.20689 1.01296 0.95689 0.97968 0.92843 0.95359 0.92780 0.92414 0.93945 0.90117 0.92891 0.76051 0.89371 0.91003 0.91705 0.91463 0.91110 0.92269 0.91966 0.91743 0.95692 0.91499 0.84165 0.93831 0.91891 0.91409 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.10 37.16 0.34 -2.65 16 2 C 0.23 5.21 2.26 -69.08 -0.16 5.05 16 3 H 0.06 1.31 4.11 -51.93 -0.21 1.10 16 4 C -0.52 -12.84 8.40 -34.44 -0.29 -13.13 16 5 H 0.08 2.20 6.82 -52.49 -0.36 1.85 16 6 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -24.30 13.96 55.43 0.77 -23.53 16 8 Si 0.85 19.76 26.95 -169.99 -4.58 15.18 16 9 H -0.26 -5.77 6.57 56.52 0.37 -5.40 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -6.04 6.78 56.52 0.38 -5.66 16 12 N -0.99 -19.78 3.12 -115.86 -0.36 -20.14 16 13 C 0.11 1.86 9.44 59.84 0.56 2.42 16 14 S 2.78 54.30 6.09 -107.50 -0.66 53.65 16 15 O -1.00 -20.42 17.21 -57.17 -0.98 -21.41 16 16 O -0.99 -22.10 16.17 -57.17 -0.92 -23.02 16 17 N -1.13 -18.46 6.05 -10.62 -0.06 -18.52 16 18 C 0.11 1.88 5.95 -4.04 -0.02 1.86 16 19 C -0.12 -1.59 4.75 -26.73 -0.13 -1.71 16 20 C -0.08 -1.14 1.77 -93.19 -0.17 -1.30 16 21 H 0.07 1.14 7.58 -51.93 -0.39 0.74 16 22 C -0.10 -1.18 4.98 -27.16 -0.14 -1.31 16 23 C -0.12 -1.34 5.27 -27.48 -0.14 -1.48 16 24 C 0.07 0.68 6.44 -2.77 -0.02 0.66 16 25 N -0.70 -7.77 6.17 -113.78 -0.70 -8.47 16 26 C 0.06 0.85 6.15 -4.70 -0.03 0.82 16 27 C -0.12 -1.70 4.46 -29.59 -0.13 -1.83 16 28 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.12 8.05 -51.93 -0.42 0.70 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.43 6.56 -51.93 -0.34 1.09 16 34 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 35 H 0.41 5.47 8.65 -34.47 -0.30 5.17 16 36 H 0.09 1.70 7.82 -51.93 -0.41 1.29 16 37 H 0.07 1.33 6.06 -51.93 -0.31 1.01 16 38 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 39 H 0.07 0.83 8.00 -51.93 -0.42 0.42 16 40 H 0.07 0.83 7.78 -51.93 -0.40 0.43 16 41 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 42 H 0.06 0.76 6.66 -51.93 -0.35 0.42 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.34 3.17 8.89 -39.29 -0.35 2.82 16 47 H 0.04 0.61 6.79 -51.92 -0.35 0.26 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 1.12 5.66 -51.93 -0.29 0.82 16 50 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -29.69 387.01 -10.77 -40.46 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.69 Total: 10.57 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.42 Total: -10.60 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -0.35 Total: -70.66 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.91 Total: -44.43 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.58 Total: 15.18 kcal Atomic # 16 Polarization: 54.30 SS G_CDS: -0.66 Total: 53.65 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.69 -10.77 -40.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.326 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds