Wall clock time and date at job start Tue Mar 31 2020 17:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47473 * 2 1 4 4 C 1.50697 * 109.47527 * 240.00091 * 2 1 3 5 5 H 1.07997 * 120.00091 * 274.47470 * 4 2 1 6 6 C 1.37881 * 120.00054 * 94.46817 * 4 2 1 7 7 N 1.31514 * 119.99976 * 184.56346 * 6 4 2 8 8 Si 1.86800 * 120.00119 * 4.56671 * 6 4 2 9 9 H 1.48497 * 109.47022 * 84.67973 * 8 6 4 10 10 H 1.48491 * 109.47105 * 204.68497 * 8 6 4 11 11 H 1.48509 * 109.46716 * 324.68440 * 8 6 4 12 12 N 1.46503 * 109.47012 * 119.99927 * 2 1 3 13 13 C 1.46494 * 119.99776 * 60.00469 * 12 2 1 14 14 S 1.65598 * 119.99893 * 239.99885 * 12 2 1 15 15 O 1.42106 * 106.40151 * 156.46177 * 14 12 2 16 16 O 1.42102 * 106.40463 * 23.54425 * 14 12 2 17 17 N 1.65606 * 107.22012 * 270.00072 * 14 12 2 18 18 C 1.46496 * 119.99624 * 65.00026 * 17 14 12 19 19 C 1.53002 * 109.46799 * 164.99712 * 18 17 14 20 20 C 1.53003 * 109.47172 * 179.97438 * 19 18 17 21 21 H 1.08998 * 109.03268 * 306.05217 * 20 19 18 22 22 C 1.54520 * 109.04235 * 187.16524 * 20 19 18 23 23 C 1.50543 * 108.86727 * 162.21487 * 22 20 19 24 24 C 1.53916 * 112.94168 * 91.75288 * 23 22 20 25 25 N 1.47946 * 113.32998 * 317.74840 * 24 23 22 26 26 C 1.44303 * 113.64482 * 318.14518 * 25 24 23 27 27 C 1.45879 * 109.03860 * 65.00583 * 20 19 18 28 28 H 1.09000 * 109.47279 * 174.95685 * 1 2 3 29 29 H 1.09000 * 109.47160 * 294.95266 * 1 2 3 30 30 H 1.09000 * 109.47116 * 54.95176 * 1 2 3 31 31 H 0.96998 * 120.00384 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46835 * 269.99432 * 13 12 2 33 33 H 1.08993 * 109.47493 * 29.99870 * 13 12 2 34 34 H 1.09004 * 109.47104 * 149.99759 * 13 12 2 35 35 H 0.96998 * 119.99963 * 245.00000 * 17 14 12 36 36 H 1.08991 * 109.47817 * 284.99828 * 18 17 14 37 37 H 1.09004 * 109.47475 * 45.00655 * 18 17 14 38 38 H 1.08992 * 109.47514 * 299.99999 * 19 18 17 39 39 H 1.09000 * 109.46920 * 60.00660 * 19 18 17 40 40 H 1.09004 * 109.57354 * 282.02456 * 22 20 19 41 41 H 1.09000 * 109.57443 * 42.39346 * 22 20 19 42 42 H 1.08998 * 108.78912 * 330.85567 * 23 22 20 43 43 H 1.08998 * 108.69264 * 212.57870 * 23 22 20 44 44 H 1.09007 * 108.71101 * 196.76111 * 24 23 22 45 45 H 1.08995 * 108.71837 * 78.74361 * 24 23 22 46 46 H 1.00898 * 110.99887 * 192.19571 * 25 24 23 47 47 H 1.09008 * 109.69473 * 335.69266 * 26 25 24 48 48 H 1.08995 * 109.69621 * 215.10509 * 26 25 24 49 49 H 1.09002 * 108.84188 * 302.88002 * 27 20 19 50 50 H 1.08998 * 108.84430 * 61.33980 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1436 -1.7846 -1.2262 6 6 2.3499 0.0111 -2.3617 7 7 2.7023 -0.6147 -3.4634 8 14 2.2797 1.8775 -2.3294 9 1 3.5579 2.4118 -1.7945 10 1 2.0675 2.3887 -3.7073 11 1 1.1579 2.3157 -1.4606 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 16 2.9703 0.1142 2.2862 15 8 2.8227 -0.5646 3.5259 16 8 2.6903 1.4973 2.1193 17 7 4.5437 -0.1042 1.8180 18 6 5.0138 0.4530 0.5473 19 6 6.5436 0.4451 0.5219 20 6 7.0347 1.0264 -0.8054 21 1 6.5649 0.4846 -1.6263 22 6 8.5669 0.8487 -0.8975 23 6 8.9896 1.0047 -2.3340 24 6 9.3728 2.4515 -2.6929 25 7 8.4524 3.4599 -2.1231 26 6 7.0608 3.0887 -2.2114 27 6 6.6500 2.4315 -0.8809 28 1 -0.3634 -1.0237 -0.0903 29 1 -0.3633 0.4335 0.9317 30 1 -0.3633 0.5901 -0.8413 31 1 2.9261 -0.1072 -4.2591 32 1 0.7375 -2.1444 1.9993 33 1 1.5296 -2.5968 0.4708 34 1 2.4629 -2.5819 1.9863 35 1 5.1540 -0.6010 2.3851 36 1 4.6337 -0.1504 -0.2769 37 1 4.6542 1.4768 0.4443 38 1 6.9239 1.0485 1.3461 39 1 6.9034 -0.5787 0.6249 40 1 9.0597 1.6060 -0.2877 41 1 8.8414 -0.1444 -0.5418 42 1 8.1687 0.6889 -2.9777 43 1 9.8478 0.3583 -2.5177 44 1 9.3749 2.5537 -3.7782 45 1 10.3793 2.6486 -2.3238 46 1 8.6113 4.3676 -2.5341 47 1 6.9203 2.3817 -3.0291 48 1 6.4538 3.9773 -2.3850 49 1 5.5682 2.5068 -0.7703 50 1 7.1254 2.9712 -0.0619 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575911304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:33 Heat of formation + Delta-G solvation = -113.059261 kcal Electronic energy + Delta-G solvation = -29425.237775 eV Core-core repulsion = 25612.469948 eV Total energy + Delta-G solvation = -3812.767827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22823 -38.42316 -37.97055 -37.11667 -36.94066 -34.73557 -34.46762 -33.23406 -31.66353 -29.88326 -27.33745 -26.98833 -26.69145 -25.55190 -23.16667 -22.43495 -21.08093 -20.75982 -20.28214 -19.25911 -18.60389 -18.30013 -17.77548 -17.39727 -16.55721 -16.24190 -16.04260 -15.88887 -15.44892 -15.23814 -14.87085 -14.58502 -14.53474 -14.42534 -14.35291 -14.09691 -13.64745 -13.51544 -13.42168 -13.31602 -13.18189 -13.09225 -13.03678 -12.85334 -12.60582 -12.57165 -12.41355 -12.35322 -12.04646 -11.95526 -11.79749 -11.57013 -11.41423 -11.32506 -11.31478 -11.04194 -10.69265 -10.40960 -9.70638 -9.26425 -8.28891 -6.30735 -0.33115 1.29967 1.36234 1.44338 1.95201 2.31387 2.57306 3.07781 3.27103 3.37561 3.69330 3.81865 3.91469 4.03463 4.13694 4.19828 4.26226 4.27833 4.42346 4.45791 4.50012 4.59141 4.69857 4.72118 4.76969 4.78643 4.80973 4.86146 4.89811 4.95536 5.01243 5.08672 5.12919 5.14798 5.21292 5.23286 5.33734 5.34920 5.40852 5.47068 5.49165 5.54178 5.61321 5.89456 6.20014 6.21780 6.36538 6.56072 6.75015 7.33923 8.85441 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.004895 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.202160 B = 5718.811872 C = 6943.471008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.234 3.766 3 H 0.043 0.957 4 C -0.505 4.505 5 H 0.060 0.940 6 C 0.045 3.955 7 N -0.925 5.925 8 Si 0.883 3.117 9 H -0.251 1.251 10 H -0.285 1.285 11 H -0.257 1.257 12 N -0.993 5.993 13 C 0.101 3.899 14 S 2.790 3.210 15 O -1.005 7.005 16 O -1.015 7.015 17 N -1.114 6.114 18 C 0.114 3.886 19 C -0.109 4.109 20 C -0.082 4.082 21 H 0.047 0.953 22 C -0.093 4.093 23 C -0.125 4.125 24 C 0.066 3.934 25 N -0.698 5.698 26 C 0.067 3.933 27 C -0.117 4.117 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.266 0.734 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.423 0.577 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.029 0.971 45 H 0.084 0.916 46 H 0.352 0.648 47 H 0.029 0.971 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.091 3.157 4.352 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.129 3.871 3 H 0.060 0.940 4 C -0.545 4.545 5 H 0.078 0.922 6 C -0.156 4.156 7 N -0.565 5.565 8 Si 0.708 3.292 9 H -0.175 1.175 10 H -0.211 1.211 11 H -0.182 1.182 12 N -0.835 5.835 13 C -0.044 4.044 14 S 2.800 3.200 15 O -0.989 6.989 16 O -0.999 6.999 17 N -0.877 5.877 18 C -0.013 4.013 19 C -0.148 4.148 20 C -0.102 4.102 21 H 0.065 0.935 22 C -0.131 4.131 23 C -0.162 4.162 24 C -0.063 4.063 25 N -0.331 5.331 26 C -0.063 4.063 27 C -0.155 4.155 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.259 0.741 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.047 0.953 45 H 0.103 0.897 46 H 0.172 0.828 47 H 0.047 0.953 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.765 3.522 5.432 13.428 hybrid contribution -0.235 0.497 -1.656 1.745 sum 11.530 4.019 3.775 12.781 Atomic orbital electron populations 1.22134 0.96574 1.01900 0.99835 1.18949 0.92975 0.92048 0.83138 0.93952 1.21238 1.42879 0.95066 0.95307 0.92200 1.25388 0.94338 1.00667 0.95164 1.69971 1.47197 1.37024 1.02271 0.86727 0.81072 0.83707 0.77671 1.17529 1.21119 1.18152 1.57720 1.65261 1.22536 1.37967 1.21376 1.00695 0.80289 1.02078 1.01408 0.73230 0.72953 0.72438 1.93535 1.86403 1.75977 1.42959 1.93523 1.84839 1.34511 1.87021 1.55587 1.29526 1.70870 1.31672 1.21423 0.97566 0.97718 0.84545 1.21824 0.91821 1.02771 0.98377 1.20133 0.97208 0.96018 0.96809 0.93482 1.21250 0.93090 1.02089 0.96676 1.21421 1.01492 0.96158 0.97171 1.22253 0.96526 0.91122 0.96374 1.59042 1.04032 1.06078 1.63969 1.21498 0.89450 0.99116 0.96238 1.20672 0.99518 0.96403 0.98911 0.91865 0.93714 0.93194 0.92480 0.92188 0.90929 0.90932 0.74086 0.92131 0.92691 0.90011 0.89739 0.90644 0.91040 0.94028 0.89818 0.95259 0.89732 0.82846 0.95293 0.91728 0.94221 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.85 9.10 71.98 0.65 -5.20 16 2 C 0.23 10.43 2.26 44.24 0.10 10.53 16 3 H 0.04 2.02 4.11 -2.39 -0.01 2.01 16 4 C -0.51 -25.43 8.40 25.60 0.22 -25.22 16 5 H 0.06 3.26 6.82 -2.91 -0.02 3.24 16 6 C 0.04 2.37 5.47 84.66 0.46 2.83 16 7 N -0.93 -52.19 13.96 21.45 0.30 -51.89 16 8 Si 0.88 41.09 26.95 68.60 1.85 42.93 16 9 H -0.25 -11.09 6.57 99.48 0.65 -10.43 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.26 -11.78 6.78 99.48 0.67 -11.11 16 12 N -0.99 -38.92 3.12 -520.46 -1.62 -40.54 16 13 C 0.10 3.36 9.44 127.77 1.21 4.56 16 14 S 2.79 105.88 6.09 -56.49 -0.34 105.53 16 15 O -1.00 -39.02 17.21 -128.00 -2.20 -41.22 16 16 O -1.02 -44.76 16.17 -128.00 -2.07 -46.84 16 17 N -1.11 -35.10 6.05 -187.50 -1.14 -36.24 16 18 C 0.11 3.85 5.95 86.38 0.51 4.36 16 19 C -0.11 -2.82 4.75 30.60 0.15 -2.68 16 20 C -0.08 -2.21 1.77 -12.46 -0.02 -2.24 16 21 H 0.05 1.51 7.58 -2.39 -0.02 1.49 16 22 C -0.09 -1.97 4.98 30.32 0.15 -1.82 16 23 C -0.12 -2.51 5.27 30.11 0.16 -2.36 16 24 C 0.07 1.20 6.44 86.41 0.56 1.76 16 25 N -0.70 -14.41 6.17 -513.90 -3.17 -17.58 16 26 C 0.07 1.74 6.15 87.12 0.54 2.28 16 27 C -0.12 -3.33 4.46 28.74 0.13 -3.20 16 28 H 0.06 2.39 7.84 -2.39 -0.02 2.37 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 2.03 8.05 -2.39 -0.02 2.01 16 31 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.07 2.53 6.56 -2.39 -0.02 2.52 16 34 H 0.07 2.11 7.79 -2.39 -0.02 2.09 16 35 H 0.42 10.46 8.65 -96.74 -0.84 9.63 16 36 H 0.06 2.40 7.82 -2.39 -0.02 2.38 16 37 H 0.05 2.06 6.06 -2.38 -0.01 2.05 16 38 H 0.08 1.87 8.13 -2.39 -0.02 1.85 16 39 H 0.08 1.90 8.00 -2.39 -0.02 1.89 16 40 H 0.07 1.55 7.78 -2.38 -0.02 1.54 16 41 H 0.07 1.34 7.92 -2.39 -0.02 1.32 16 42 H 0.04 1.01 6.66 -2.39 -0.02 1.00 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.35 5.92 8.89 -89.70 -0.80 5.12 16 47 H 0.03 0.82 6.79 -2.38 -0.02 0.81 16 48 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.04 1.33 5.66 -2.39 -0.01 1.32 16 50 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 Total: -1.00 -63.58 387.01 -4.37 -67.95 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.78 Total: 34.27 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 4.81 Total: -16.37 kcal Atomic # 7 Polarization: -140.63 SS G_CDS: -5.63 Total: -146.26 kcal Atomic # 8 Polarization: -83.79 SS G_CDS: -4.27 Total: -88.06 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.85 Total: 42.93 kcal Atomic # 16 Polarization: 105.88 SS G_CDS: -0.34 Total: 105.53 kcal Total: -63.58 -4.37 -67.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.108 kcal (2) G-P(sol) polarization free energy of solvation -63.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds